Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005717

Physical Location & Seq

Genomic Coordinates Forward (+)

1315923 .. 1317241

Gene Structure 1319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1009000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTGTTTGGCACATGGATGCCCTGATCTCAGAACTGTTGATTTGTGCGGCTGTGTCCTAATATCAGATGATAGTGTGATTGCTTTGGCAAACAGGTGTCCTCATTTGCAATCGCTTGACCTTTACTACTGTAAGAACATTACAGACAGAGCAATGTATTCCTTGGCCCAGAGTGTAGTGAAGAACAAGCCTGCGGCAATGTGGGAATCCCGGAAAGCCAGGAATGACGAGGAAGGGCTTAGGACCCTCAACATTAGCCAATGCACAGCACTCACCCCTTCTGCTGTTCAGGCGGTGTGCGACTCGTTCCCTGCACTTCACACCTGCTCTGGAAGGCATTCCCTCATCATTAGCGGCTGTTTGAACTTGACGTCGGTGCATTGTGCCTGCGCTGTCCAAGCTCACCGCACTGCCAACGCCTTTCCTCATTCAGCTCATGGAACCAATGAACGGGGATTAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

155

Amino Acids

16.57

Weight (kDa)

7.55

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21410 AT1G21410 AT1G77000 AT1G77000 AT1G77000 AT1G77000
fragaria_vesca	FvH4_2g15180 FvH4_2g15180 FvH4_2g15180
malus_domestica	MD05G1010400.v1.1 MD10G1009000.v1.1
prunus_persica	Prupe.8G012800_v2.0.a1 Prupe.8G012800_v2.0.a1 Prupe.8G012800_v2.0.a1
pyrus_communis	pycom05g00540 pycom05g00550 pycom10g00540
rosa_chinensis	RchiOBHm_Chr6g0277841
rosa_laevigata	RLG00000013264
rosa_multiflora	Rmu_co8341071.1_g000001 Rmu_sc0001874.1_g000005
rosa_roxburghii	Rroxscaffold_7G00190860
rosa_rugosa	Rorug06G0112000
rosa_samantha	Rh6AG222800 Rh6BG226300 Rh6CG228700 Rh6DG219800
rosa_wichuraiana	Rw6G019470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	332
AatII	GACGTC	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	332
AciI	CCGC	5 cut(s)	48, 194, 293, 354, 406
AcyI	GRCGYC	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	450
AgsI	TTSAA	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	2 cut(s)	401, 434
AluI	AGCT	2 cut(s)	401, 434
AoxI	GGCC	1 cut(s)	165
Asp700I	GAANNNNTTC	1 cut(s)	337
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	2 cut(s)	166, 243
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	265, 395
AvaII	GGWCC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	211
BfuAI	ACCTGC	1 cut(s)	332
BisI	GCNGC	3 cut(s)	49, 195, 355
BlsI	GCNGC	3 cut(s)	50, 196, 356
Bme1390I	CCNGG	2 cut(s)	211, 220
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	2 cut(s)	166, 243
BmiI	GGNNCC	2 cut(s)	245, 442
BmrFI	CCNGG	2 cut(s)	211, 220
BmsI	GCATC	1 cut(s)	8
Bpu10I	CCTNAGC	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	450
Bse3DI	GCAATG	2 cut(s)	159, 204
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	450
BseMI	GCAATG	2 cut(s)	159, 204
BseMII	CTCAG	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	450
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	5 cut(s)	48, 194, 293, 354, 406
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	245, 442
BspMI	ACCTGC	1 cut(s)	332
BsrDI	GCAATG	2 cut(s)	159, 204
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	1 cut(s)	25
BssNI	GRCGYC	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	37, 131
BstACI	GRCGYC	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	192, 388
BstDEI	CTNAG	2 cut(s)	29, 239
BstF5I	GGATG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 398
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	209, 218
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	23
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	408
BveI	ACCTGC	1 cut(s)	332
Cac8I	GCNNGC	2 cut(s)	192, 388
CfoI	GCGC	1 cut(s)	392
Cfr13I	GGNCC	2 cut(s)	166, 243
CviAII	CATG	2 cut(s)	14, 437
CviJI	RGCY	9 cut(s)	51, 167, 190, 218, 238, 258, 357, 401, 434
CviKI_1	RGCY	9 cut(s)	51, 167, 190, 218, 238, 258, 357, 401, 434
DdeI	CTNAG	2 cut(s)	29, 239
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	2 cut(s)	17, 440
FaiI	YATR	2 cut(s)	15, 438
FatI	CATG	2 cut(s)	13, 436
Fnu4HI	GCNGC	3 cut(s)	49, 195, 355
FokI	GGATG	1 cut(s)	30
Fsp4HI	GCNGC	3 cut(s)	49, 195, 355
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	3 cut(s)	49, 195, 355
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	211
HhaI	GCGC	1 cut(s)	392
Hin1I	GRCGYC	1 cut(s)	371
Hin1II	CATG	2 cut(s)	17, 440
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HinfI	GANTC	2 cut(s)	206, 302
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	2 cut(s)	265, 395
Hpy188I	TCNGA	2 cut(s)	32, 67
Hpy188III	TCNNGA	1 cut(s)	330
Hpy99I	CGWCG	1 cut(s)	376
HpyAV	CCTTC	3 cut(s)	227, 288, 327
HpyCH4III	ACNGT	2 cut(s)	37, 131
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	4 cut(s)	109, 264, 314, 379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 398
HpyF3I	CTNAG	2 cut(s)	29, 239
HpySE526I	ACGT	1 cut(s)	371
Hsp92I	GRCGYC	1 cut(s)	371
Hsp92II	CATG	2 cut(s)	17, 440
HspAI	GCGC	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	25
LweI	GCATC	1 cut(s)	8
MaeII	ACGT	1 cut(s)	371
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	1 cut(s)	193
MlyI	GAGTC	1 cut(s)	296
MnlI	CCTC	5 cut(s)	111, 223, 257, 353, 435
MroXI	GAANNNNTTC	1 cut(s)	337
MslI	CAYNNNNRTG	1 cut(s)	16
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	2 cut(s)	211, 220
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	290, 398
NciI	CCSGG	1 cut(s)	211
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	2 cut(s)	17, 440
NlaIV	GGNNCC	2 cut(s)	245, 442
PaqCI	CACCTGC	1 cut(s)	332
PctI	GAATGC	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	206
PfoI	TCCNGGA	1 cut(s)	209
PkrI	GCNGC	3 cut(s)	50, 196, 356
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PpuMI	RGGWCCY	1 cut(s)	243
Psp5II	RGGWCCY	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	2 cut(s)	245, 442
PspPI	GGNCC	2 cut(s)	166, 243
PspPPI	RGGWCCY	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	16
SatI	GCNGC	3 cut(s)	49, 195, 355
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	2 cut(s)	166, 243
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	2 cut(s)	211, 220
SetI	ASST	6 cut(s)	98, 123, 326, 374, 403, 436
SfaNI	GCATC	1 cut(s)	8
SinI	GGWCC	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	16
SsiI	CCGC	5 cut(s)	48, 194, 293, 354, 406
StyD4I	CCNGG	2 cut(s)	209, 218
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	37, 131
TaiI	ACGT	1 cut(s)	374
TauI	GCSGC	3 cut(s)	51, 197, 357
TfiI	GAWTC	1 cut(s)	206
TscAI	CASTG	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	462
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	243
XmnI	GAANNNNTTC	1 cut(s)	337
ZraI	GACGTC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.