FvH4_2g15180

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0005717
Physical Location & Seq
Reverse (-)
13300257 .. 13304809
4553 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15180.t3

Sequence Viewer

Length: 894 bp
ATGTTTTGTTACTGTTGGGAACCCAGCATGGATTCCTTCAATGGGTGTAACAAGAACATGAACAACTTGGTCCTATCTCTTGCTCCTAAGTTTACAAGGTTGCAAACTCTAATACTACGTCAGGATAAACCCCAACTTGAAGACAATGCTGTTGAAAGCATTGCAAACTTCTGTCATGATCTGCAGGTCCTGGACCTTAGCAAAAGCTTCAAGCTCACTGATCGCTCCCTGTATGCCTTAGCTCATGGGTGTCCTAATCTTATGAGACTCAACATCAGCGGTTGTTCTGCATTCAGTGACATTGCTCTTGAATATCTGGCTGGCTTTTGCCCAAAAATGAAAGTATTAAATCTGTGTGGATGTTCCAGGGCTGCATCAGATAGGGCATTGCAGGCTATTGGGCGTTACTGCAGTGAGTTGCAGTGTCTGAATCTTGGTTGGTGTGAGGAAGTCGGTGATGTCGGAGTTATGAGTTTGGCATATGGATGCCCTGACCTAAGAACTGTCGACTTGTGCGGCTGTGTCCAAATAACAGATGACAGTGTGGTTGCTTTGGCAAACAAATGCCCTCATCTGAGATCCCTCGGCCTTTACTATTGTCAAAACATTACAGACAAGGCAATGTACTCTTTGGCCCAGAGTCTTGCCGCAATGTGGGAAACCAGGAAAAGCAAGAACGATGAGGAAGGGCTCAAGACTCTCAATATCAGCCAGTGCACAGCCCTCACCCCTGATGCTGTTCAGGCAGTGTGCGACTCCTTTCCATCACTTCATACCTGCTCTGGAAGGCACTCTCTCATCATGAGTGGCTGTTTGAACTTGACATCTGTGCATTGTGCATGTGCTGTCCAGGCGCACCGCGCTGCTGCTGCCTACCCTCACTCAGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010286 GO:0010311 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0031146 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048581 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051302 GO:0051603 GO:0051716 GO:0051781 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901332 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905392 GO:1905393 GO:1990234 GO:2000023 GO:2000026 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04068 ko04110 ko04120 ko04150 ko05168 ko05169 ko05200 ko05203 ko05222 map04068 map04110 map04120 map04150 map05168 map05169 map05200 map05203 map05222
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

298

Amino Acids

32.48

Weight (kDa)

6.29

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 75 - 240 1.8e-14 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 175, 785
AccI GTMKAC 1 cut(s) 507
AccII CGCG 1 cut(s) 861
AciI CCGC 4 cut(s) 279, 516, 648, 859
AclWI GGATC 1 cut(s) 573
AfaI GTAC 1 cut(s) 626
AfiI CCNNNNNNNGG 2 cut(s) 42, 654
AgsI TTSAA 6 cut(s) 40, 140, 155, 211, 311, 817
AjnI CCWGG 4 cut(s) 189, 365, 662, 849
AluBI AGCT 4 cut(s) 207, 214, 242, 887
AluI AGCT 4 cut(s) 207, 214, 242, 887
Alw21I GWGCWC 1 cut(s) 719
Alw26I GTCTC 1 cut(s) 259
Alw44I GTGCAC 1 cut(s) 715
AlwI GGATC 1 cut(s) 573
AlwNI CAGNNNCTG 2 cut(s) 190, 427
AoxI GGCC 2 cut(s) 586, 633
ApaLI GTGCAC 1 cut(s) 715
ApeKI GCWGC 4 cut(s) 371, 863, 866, 869
AspLEI GCGC 2 cut(s) 856, 863
AspS9I GGNCC 4 cut(s) 70, 187, 193, 634
AsuHPI GGTGA 2 cut(s) 467, 718
AvaII GGWCC 3 cut(s) 70, 187, 193
BaeGI GKGCMC 1 cut(s) 719
BanII GRGCYC 1 cut(s) 693
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 719
BbvI GCAGC 4 cut(s) 358, 850, 853, 856
BccI CCATC 1 cut(s) 772
BciT130I CCWGG 4 cut(s) 191, 367, 664, 851
BcoDI GTCTC 1 cut(s) 259
BfmI CTRYAG 2 cut(s) 182, 409
BfuAI ACCTGC 2 cut(s) 175, 785
BisI GCNGC 6 cut(s) 372, 517, 648, 864, 867, 870
BlsI GCNGC 6 cut(s) 373, 518, 649, 865, 868, 871
Bme1390I CCNGG 4 cut(s) 191, 367, 664, 851
Bme18I GGWCC 3 cut(s) 70, 187, 193
BmgT120I GGNCC 4 cut(s) 70, 187, 193, 634
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 4 cut(s) 191, 367, 664, 851
BmsI GCATC 3 cut(s) 383, 476, 724
BpiI GAAGAC 1 cut(s) 147
Bpu10I CCTNAGC 2 cut(s) 197, 238
BpuEI CTTGAG 1 cut(s) 677
BsaJI CCNNGG 2 cut(s) 366, 583
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 654
Bse1I ACTGG 1 cut(s) 712
Bse3DI GCAATG 5 cut(s) 159, 300, 386, 627, 657
BseBI CCWGG 4 cut(s) 191, 367, 664, 851
BseDI CCNNGG 2 cut(s) 366, 583
BseGI GGATG 2 cut(s) 365, 491
BseLI CCNNNNNNNGG 2 cut(s) 42, 654
BseMI GCAATG 5 cut(s) 159, 300, 386, 627, 657
BseMII CTCAG 1 cut(s) 566
BseNI ACTGG 1 cut(s) 712
BseSI GKGCMC 1 cut(s) 719
BseXI GCAGC 4 cut(s) 358, 850, 853, 856
BseYI CCCAGC 1 cut(s) 23
Bsh1236I CGCG 1 cut(s) 861
BshFI GGCC 2 cut(s) 588, 635
BsiHKAI GWGCWC 1 cut(s) 719
BslI CCNNNNNNNGG 2 cut(s) 42, 654
BsmAI GTCTC 1 cut(s) 259
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 2 cut(s) 588, 635
Bsp1286I GDGCHC 2 cut(s) 693, 719
Bsp143I GATC 3 cut(s) 178, 220, 578
BspACI CCGC 4 cut(s) 279, 516, 648, 859
BspANI GGCC 2 cut(s) 588, 635
BspCNI CTCAG 1 cut(s) 567
BspFNI CGCG 1 cut(s) 861
BspHI TCATGA 2 cut(s) 175, 801
BspLI GGNNCC 1 cut(s) 21
BspMAI CTGCAG 2 cut(s) 186, 413
BspMI ACCTGC 2 cut(s) 175, 785
BspPI GGATC 1 cut(s) 573
BsrDI GCAATG 5 cut(s) 159, 300, 386, 627, 657
BsrI ACTGG 1 cut(s) 712
BssECI CCNNGG 2 cut(s) 366, 583
BssMI GATC 3 cut(s) 178, 220, 578
Bst2UI CCWGG 4 cut(s) 191, 367, 664, 851
Bst4CI ACNGT 3 cut(s) 14, 505, 542
BstC8I GCNNGC 2 cut(s) 322, 393
BstDEI CTNAG 6 cut(s) 87, 197, 238, 497, 575, 883
BstF5I GGATG 2 cut(s) 365, 491
BstFNI CGCG 1 cut(s) 861
BstHHI GCGC 2 cut(s) 856, 863
BstKTI GATC 3 cut(s) 181, 223, 581
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 3 cut(s) 178, 220, 578
BstMWI GCNNNNNNNGC 5 cut(s) 392, 743, 851, 860, 869
BstNI CCWGG 4 cut(s) 191, 367, 664, 851
BstNSI RCATGY 1 cut(s) 843
BstSCI CCNGG 4 cut(s) 189, 365, 662, 849
BstSFI CTRYAG 2 cut(s) 182, 409
BstSLI GKGCMC 1 cut(s) 719
BstUI CGCG 1 cut(s) 861
BstV1I GCAGC 4 cut(s) 358, 850, 853, 856
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 578
BstYI RGATCY 1 cut(s) 578
BsuRI GGCC 2 cut(s) 588, 635
BtsCI GGATG 2 cut(s) 365, 491
BtsI GCAGTG 3 cut(s) 418, 428, 753
BtsIMutI CAGTG 7 cut(s) 216, 301, 418, 428, 547, 719, 753
BveI ACCTGC 2 cut(s) 175, 785
Cac8I GCNNGC 2 cut(s) 322, 393
CaiI CAGNNNCTG 2 cut(s) 190, 427
CciI TCATGA 2 cut(s) 175, 801
CfoI GCGC 2 cut(s) 856, 863
Cfr13I GGNCC 4 cut(s) 70, 187, 193, 634
Csp6I GTAC 1 cut(s) 625
CviAII CATG 6 cut(s) 28, 58, 176, 245, 802, 840
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 6 cut(s) 87, 197, 238, 497, 575, 883
DpnI GATC 3 cut(s) 180, 222, 580
DpnII GATC 3 cut(s) 178, 220, 578
Eco24I GRGCYC 1 cut(s) 693
Eco47I GGWCC 3 cut(s) 70, 187, 193
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 4 cut(s) 189, 365, 662, 849
EcoT38I GRGCYC 1 cut(s) 693
FaeI CATG 6 cut(s) 31, 61, 179, 248, 805, 843
FatI CATG 6 cut(s) 27, 57, 175, 244, 801, 839
FauNDI CATATG 1 cut(s) 481
FblI GTMKAC 1 cut(s) 507
Fnu4HI GCNGC 6 cut(s) 372, 517, 648, 864, 867, 870
FokI GGATG 2 cut(s) 372, 498
FriOI GRGCYC 1 cut(s) 693
Fsp4HI GCNGC 6 cut(s) 372, 517, 648, 864, 867, 870
GlaI GCGC 2 cut(s) 855, 862
GluI GCNGC 6 cut(s) 372, 517, 648, 864, 867, 870
GsaI CCCAGC 1 cut(s) 27
HaeIII GGCC 2 cut(s) 588, 635
HhaI GCGC 2 cut(s) 856, 863
Hin1II CATG 6 cut(s) 31, 61, 179, 248, 805, 843
Hin6I GCGC 2 cut(s) 854, 861
HinP1I GCGC 2 cut(s) 854, 861
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HindIII AAGCTT 1 cut(s) 205
HinfI GANTC 6 cut(s) 32, 267, 430, 640, 697, 755
HphI GGTGA 2 cut(s) 467, 718
Hpy166II GTNNAC 3 cut(s) 93, 508, 717
Hpy188I TCNGA 4 cut(s) 379, 429, 464, 576
Hpy188III TCNNGA 6 cut(s) 122, 176, 308, 694, 783, 802
Hpy8I GTNNAC 3 cut(s) 93, 508, 717
HpyAV CCTTC 3 cut(s) 46, 680, 780
HpyCH4III ACNGT 3 cut(s) 14, 505, 542
HpyCH4IV ACGT 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 5 cut(s) 392, 743, 851, 860, 869
HpyF3I CTNAG 6 cut(s) 87, 197, 238, 497, 575, 883
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 6 cut(s) 31, 61, 179, 248, 805, 843
HspAI GCGC 2 cut(s) 854, 861
Kzo9I GATC 3 cut(s) 178, 220, 578
LmnI GCTCC 2 cut(s) 88, 230
Lsp1109I GCAGC 4 cut(s) 358, 850, 853, 856
LweI GCATC 3 cut(s) 383, 476, 724
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 4 cut(s) 8, 47, 296, 404
MalI GATC 3 cut(s) 180, 222, 580
MboI GATC 3 cut(s) 178, 220, 578
MboII GAAGA 1 cut(s) 152
MflI RGATCY 1 cut(s) 578
MhlI GDGCHC 2 cut(s) 693, 719
MlyI GAGTC 4 cut(s) 261, 649, 691, 749
MmeI TCCRAC 1 cut(s) 442
MnlI CCTC 6 cut(s) 439, 579, 593, 676, 734, 888
MseI TTAA 1 cut(s) 347
MslI CAYNNNNRTG 1 cut(s) 484
MspA1I CMGCKG 1 cut(s) 279
MspR9I CCNGG 4 cut(s) 191, 367, 664, 851
Mva1269I GAATGC 1 cut(s) 290
MvaI CCWGG 4 cut(s) 191, 367, 664, 851
MvnI CGCG 1 cut(s) 861
MwoI GCNNNNNNNGC 5 cut(s) 392, 743, 851, 860, 869
NdeI CATATG 1 cut(s) 481
NdeII GATC 3 cut(s) 178, 220, 578
NlaIII CATG 6 cut(s) 31, 61, 179, 248, 805, 843
NlaIV GGNNCC 1 cut(s) 21
NmeAIII GCCGAG 1 cut(s) 564
NmuCI GTSAC 1 cut(s) 296
NspI RCATGY 1 cut(s) 843
PagI TCATGA 2 cut(s) 175, 801
PctI GAATGC 1 cut(s) 290
PfeI GAWTC 2 cut(s) 32, 430
PfoI TCCNGGA 1 cut(s) 189
PkrI GCNGC 6 cut(s) 373, 518, 649, 865, 868, 871
PleI GAGTC 4 cut(s) 261, 648, 691, 749
PpsI GAGTC 4 cut(s) 261, 648, 691, 749
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 4 cut(s) 189, 365, 662, 849
PspFI CCCAGC 1 cut(s) 23
PspGI CCWGG 4 cut(s) 189, 365, 662, 849
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 4 cut(s) 70, 187, 193, 634
PspPPI RGGWCCY 1 cut(s) 187
PstI CTGCAG 2 cut(s) 186, 413
PstNI CAGNNNCTG 2 cut(s) 190, 427
PsuI RGATCY 1 cut(s) 578
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
RseI CAYNNNNRTG 1 cut(s) 484
SalI GTCGAC 1 cut(s) 506
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 6 cut(s) 372, 517, 648, 864, 867, 870
Sau3AI GATC 3 cut(s) 178, 220, 578
Sau96I GGNCC 4 cut(s) 70, 187, 193, 634
SchI GAGTC 4 cut(s) 261, 649, 691, 749
ScrFI CCNGG 4 cut(s) 191, 367, 664, 851
SduI GDGCHC 2 cut(s) 693, 719
SfaNI GCATC 3 cut(s) 383, 476, 724
SfcI CTRYAG 2 cut(s) 182, 409
SinI GGWCC 3 cut(s) 70, 187, 193
SmiMI CAYNNNNRTG 1 cut(s) 484
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
SsiI CCGC 4 cut(s) 279, 516, 648, 859
StyD4I CCNGG 4 cut(s) 189, 365, 662, 849
TaaI ACNGT 3 cut(s) 14, 505, 542
TaiI ACGT 1 cut(s) 121
TaqI TCGA 1 cut(s) 507
TatI WGTACW 1 cut(s) 624
TauI GCSGC 2 cut(s) 519, 650
TfiI GAWTC 2 cut(s) 32, 430
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TscAI CASTG 7 cut(s) 223, 301, 418, 428, 547, 719, 753
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 4 cut(s) 371, 863, 866, 869
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 3 cut(s) 74, 353, 761
TspRI CASTG 7 cut(s) 223, 301, 418, 428, 547, 719, 753
VneI GTGCAC 1 cut(s) 715
VpaK11BI GGWCC 3 cut(s) 70, 187, 193
XceI RCATGY 1 cut(s) 843
XmiI GTMKAC 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.