RLG00000013264

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005717
Physical Location & Seq
Forward (+)
28950460 .. 28953618
3159 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013264

Sequence Viewer

Length: 1104 bp
ATGGTTGGAAAAGAAAACCTCAAGACTGAGCACTTAAACTTGTGCTTTGAGAAGCTGATGATGAGTGGGAAAGTGAAAATGGAAGGAAGGGTAATGACAGATTGGAAGGATATTCCGATGGAGCTCCTGTTGCAGATTCTGACACTTGTCGATGATCAGACGGTGATCACAGCTTCTGGAGTCTGTCGTGGTTGGAGAGATGCTATTTGCTTGGGCATCACTCGTCTCTCCCTCTCATGGTGTAACAAGAACATGAACAACTTGGTCCTATCTCTTGCTCCTAAGTTTACAAGGTTGCAAACTCTAATACTACGTCAGGATAAACCCCAACTTGAAGATAATGCTGTTCAGAGCATTGCAAACTTCTGTTATGATCTTCAGGTCCTGGACCTTAGCAAAAGCTTCAAGCTCACTGACCACTCCTTGTATGCCTTAGCTCATGGGTGTCCTAATCTTACAAGACTCAACATCAGCGGTTGTTCTGCATTCAGTGACATTGCTCTTGAATATCTGGCTGGATTTTGCCCAAAATTGAAAGTATTAAATCTTTGTGGATGTGTCAGGGCTGCATCAGATAGGGCATTGCAGGCCATCGGCCGTTACTGCAGTGAGTTGCAGTGTCTGAATCTCGGTTGGTGTGAGGAAGTCGGTGATGTTGGAGTTATGAGTTTGGCTTATGGATGCCCTGACCTCAGAACTGTTGACTTGTGCGGCTGTGTCCAAATAACAGATGACAGCGTGGTTGCTTTGGCAAACGGGTGTCCTCATCTGAGATCCCTTGGCCTTTACTACTGTCAAAACATTACAGACAAGGCAATGTATTCTTTGGCCCAGAGTGTAGTGAAGAACAAGCCTGCAGCAATGTGGGAATCCAGGAAAAGCAGGAATGATGAGGAAGGGCTCAAGACACTCAACATCAGCCAGTGCACGGCACTCACCCCTTCTGCTGTTCAAGCAGTGTGCGACTCCTTTCCATCACTTCACACCTGCTCTGGAAGGCACTCCCTCATCATGAGTGGCTGTCTGAACTTGACATCCGTGCATTGTGCATGTGCTGTACAGGCGCACCGCACTGCTGCTGCCTTTCCTCATTCAGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010286 GO:0010311 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0031146 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048581 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051302 GO:0051603 GO:0051716 GO:0051781 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901332 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905392 GO:1905393 GO:1990234 GO:2000023 GO:2000026 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04068 ko04110 ko04120 ko04150 ko05168 ko05169 ko05200 ko05203 ko05222 map04068 map04110 map04120 map04150 map05168 map05169 map05200 map05203 map05222
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

368

Amino Acids

40.22

Weight (kDa)

7.41

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 35 - 70 1.2e-06 F-box-like
DUF7885 PF25372 85 - 277 2.2e-16 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 995
Acc36I ACCTGC 1 cut(s) 995
AciI CCGC 3 cut(s) 474, 711, 1069
AclWI GGATC 1 cut(s) 768
AcoI YGGCCR 1 cut(s) 595
AcuI CTGAAG 1 cut(s) 362
AfaI GTAC 1 cut(s) 1059
AfiI CCNNNNNNNGG 2 cut(s) 237, 928
AgsI TTSAA 5 cut(s) 335, 406, 506, 535, 953
AjnI CCWGG 2 cut(s) 384, 872
AloI GAACNNNNNNTCC 2 cut(s) 1019, 1051
AluBI AGCT 7 cut(s) 55, 124, 173, 402, 409, 437, 1097
AluI AGCT 7 cut(s) 55, 124, 173, 402, 409, 437, 1097
Alw21I GWGCWC 3 cut(s) 33, 126, 929
Alw26I GTCTC 1 cut(s) 230
Alw44I GTGCAC 1 cut(s) 925
AlwI GGATC 1 cut(s) 768
AlwNI CAGNNNCTG 4 cut(s) 139, 176, 385, 622
AoxI GGCC 4 cut(s) 588, 595, 781, 828
ApaLI GTGCAC 1 cut(s) 925
ApeKI GCWGC 4 cut(s) 566, 857, 1076, 1079
AspLEI GCGC 1 cut(s) 1066
AspS9I GGNCC 4 cut(s) 265, 382, 388, 829
AsuHPI GGTGA 3 cut(s) 175, 662, 928
AvaII GGWCC 3 cut(s) 265, 382, 388
BaeGI GKGCMC 1 cut(s) 929
BanII GRGCYC 2 cut(s) 126, 903
Bbv12I GWGCWC 3 cut(s) 33, 126, 929
BbvI GCAGC 4 cut(s) 553, 869, 1063, 1066
BccI CCATC 3 cut(s) 112, 599, 982
BceAI ACGGC 2 cut(s) 582, 945
BciT130I CCWGG 2 cut(s) 386, 874
BclI TGATCA 2 cut(s) 154, 165
BcoDI GTCTC 1 cut(s) 230
BfmI CTRYAG 2 cut(s) 604, 855
BfuAI ACCTGC 1 cut(s) 995
BisI GCNGC 5 cut(s) 567, 712, 858, 1077, 1080
BlsI GCNGC 5 cut(s) 568, 713, 859, 1078, 1081
Bme1390I CCNGG 2 cut(s) 386, 874
Bme18I GGWCC 3 cut(s) 265, 382, 388
BmgT120I GGNCC 4 cut(s) 265, 382, 388, 829
BmrFI CCNGG 2 cut(s) 386, 874
BmsI GCATC 4 cut(s) 190, 225, 578, 671
BoxI GACNNNNGTC 1 cut(s) 146
BpmI CTGGAG 1 cut(s) 198
Bpu10I CCTNAGC 2 cut(s) 392, 433
BpuEI CTTGAG 2 cut(s) 5, 887
BsaJI CCNNGG 1 cut(s) 778
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 928
Bse1I ACTGG 1 cut(s) 922
Bse3DI GCAATG 5 cut(s) 354, 495, 581, 822, 867
BseBI CCWGG 2 cut(s) 386, 874
BseDI CCNNGG 1 cut(s) 778
BseGI GGATG 3 cut(s) 560, 686, 1034
BseLI CCNNNNNNNGG 2 cut(s) 237, 928
BseMI GCAATG 5 cut(s) 354, 495, 581, 822, 867
BseMII CTCAG 3 cut(s) 18, 706, 761
BseNI ACTGG 1 cut(s) 922
BseSI GKGCMC 1 cut(s) 929
BseX3I CGGCCG 1 cut(s) 595
BseXI GCAGC 4 cut(s) 553, 869, 1063, 1066
Bsh1285I CGRYCG 1 cut(s) 598
BshFI GGCC 4 cut(s) 590, 597, 783, 830
BsiEI CGRYCG 1 cut(s) 598
BsiHKAI GWGCWC 3 cut(s) 33, 126, 929
BslI CCNNNNNNNGG 2 cut(s) 237, 928
BsmAI GTCTC 1 cut(s) 230
BsmBI CGTCTC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 485
BsnI GGCC 4 cut(s) 590, 597, 783, 830
Bsp1286I GDGCHC 4 cut(s) 33, 126, 903, 929
Bsp1407I TGTACA 1 cut(s) 1057
Bsp143I GATC 4 cut(s) 154, 165, 373, 773
BspACI CCGC 3 cut(s) 474, 711, 1069
BspANI GGCC 4 cut(s) 590, 597, 783, 830
BspCNI CTCAG 3 cut(s) 19, 705, 762
BspHI TCATGA 1 cut(s) 1011
BspMAI CTGCAG 2 cut(s) 608, 859
BspMI ACCTGC 1 cut(s) 995
BspPI GGATC 1 cut(s) 768
BsrDI GCAATG 5 cut(s) 354, 495, 581, 822, 867
BsrGI TGTACA 1 cut(s) 1057
BsrI ACTGG 1 cut(s) 922
BssECI CCNNGG 1 cut(s) 778
BssMI GATC 4 cut(s) 154, 165, 373, 773
BssT1I CCWWGG 1 cut(s) 778
Bst2UI CCWGG 2 cut(s) 386, 874
Bst4CI ACNGT 3 cut(s) 163, 700, 794
BstAUI TGTACA 1 cut(s) 1057
BstC8I GCNNGC 2 cut(s) 588, 855
BstDEI CTNAG 6 cut(s) 27, 282, 392, 433, 692, 770
BstF5I GGATG 3 cut(s) 560, 686, 1034
BstHHI GCGC 1 cut(s) 1066
BstKTI GATC 4 cut(s) 157, 168, 376, 776
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 4 cut(s) 154, 165, 373, 773
BstMCI CGRYCG 1 cut(s) 598
BstMWI GCNNNNNNNGC 5 cut(s) 130, 587, 603, 953, 1061
BstNI CCWGG 2 cut(s) 386, 874
BstNSI RCATGY 1 cut(s) 1053
BstPAI GACNNNNGTC 1 cut(s) 146
BstSCI CCNGG 2 cut(s) 384, 872
BstSFI CTRYAG 2 cut(s) 604, 855
BstSLI GKGCMC 1 cut(s) 929
BstV1I GCAGC 4 cut(s) 553, 869, 1063, 1066
BstX2I RGATCY 1 cut(s) 773
BstYI RGATCY 1 cut(s) 773
BstZI CGGCCG 1 cut(s) 595
BsuRI GGCC 4 cut(s) 590, 597, 783, 830
BtsCI GGATG 3 cut(s) 560, 686, 1034
BtsI GCAGTG 4 cut(s) 613, 623, 963, 1071
BtsIMutI CAGTG 7 cut(s) 411, 496, 613, 623, 929, 963, 1071
BveI ACCTGC 1 cut(s) 995
Cac8I GCNNGC 2 cut(s) 588, 855
CaiI CAGNNNCTG 4 cut(s) 139, 176, 385, 622
CciI TCATGA 1 cut(s) 1011
CfoI GCGC 1 cut(s) 1066
Cfr13I GGNCC 4 cut(s) 265, 382, 388, 829
Csp6I GTAC 1 cut(s) 1058
CviAII CATG 5 cut(s) 237, 253, 440, 1012, 1050
CviQI GTAC 1 cut(s) 1058
DdeI CTNAG 6 cut(s) 27, 282, 392, 433, 692, 770
DpnI GATC 4 cut(s) 156, 167, 375, 775
DpnII GATC 4 cut(s) 154, 165, 373, 773
EaeI YGGCCR 1 cut(s) 595
EagI CGGCCG 1 cut(s) 595
Ecl136II GAGCTC 1 cut(s) 124
EclXI CGGCCG 1 cut(s) 595
Eco130I CCWWGG 1 cut(s) 778
Eco24I GRGCYC 2 cut(s) 126, 903
Eco47I GGWCC 3 cut(s) 265, 382, 388
Eco52I CGGCCG 1 cut(s) 595
Eco53kI GAGCTC 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 362
EcoICRI GAGCTC 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 382
EcoRII CCWGG 2 cut(s) 384, 872
EcoT14I CCWWGG 1 cut(s) 778
EcoT38I GRGCYC 2 cut(s) 126, 903
ErhI CCWWGG 1 cut(s) 778
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 5 cut(s) 240, 256, 443, 1015, 1053
FaiI YATR 9 cut(s) 238, 254, 372, 429, 441, 665, 678, 1013, 1051
FatI CATG 5 cut(s) 236, 252, 439, 1011, 1049
FbaI TGATCA 2 cut(s) 154, 165
Fnu4HI GCNGC 5 cut(s) 567, 712, 858, 1077, 1080
FokI GGATG 3 cut(s) 567, 693, 1021
FriOI GRGCYC 2 cut(s) 126, 903
Fsp4HI GCNGC 5 cut(s) 567, 712, 858, 1077, 1080
GlaI GCGC 1 cut(s) 1065
GluI GCNGC 5 cut(s) 567, 712, 858, 1077, 1080
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 4 cut(s) 590, 597, 783, 830
HhaI GCGC 1 cut(s) 1066
Hin1II CATG 5 cut(s) 240, 256, 443, 1015, 1053
Hin6I GCGC 1 cut(s) 1064
HinP1I GCGC 1 cut(s) 1064
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 6 cut(s) 136, 180, 462, 625, 869, 965
HphI GGTGA 3 cut(s) 175, 662, 928
Hpy166II GTNNAC 3 cut(s) 288, 703, 927
Hpy188I TCNGA 9 cut(s) 117, 141, 159, 351, 574, 624, 695, 771, 1026
Hpy188III TCNNGA 7 cut(s) 22, 177, 317, 503, 904, 993, 1012
Hpy8I GTNNAC 3 cut(s) 288, 703, 927
HpyAV CCTTC 6 cut(s) 77, 81, 100, 890, 951, 990
HpyCH4III ACNGT 3 cut(s) 163, 700, 794
HpyCH4IV ACGT 1 cut(s) 313
HpyF10VI GCNNNNNNNGC 5 cut(s) 130, 587, 603, 953, 1061
HpyF3I CTNAG 6 cut(s) 27, 282, 392, 433, 692, 770
HpySE526I ACGT 1 cut(s) 313
Hsp92II CATG 5 cut(s) 240, 256, 443, 1015, 1053
HspAI GCGC 1 cut(s) 1064
Ksp22I TGATCA 2 cut(s) 154, 165
Kzo9I GATC 4 cut(s) 154, 165, 373, 773
LmnI GCTCC 3 cut(s) 121, 129, 283
Lsp1109I GCAGC 4 cut(s) 553, 869, 1063, 1066
LweI GCATC 4 cut(s) 190, 225, 578, 671
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 3 cut(s) 242, 491, 599
MalI GATC 4 cut(s) 156, 167, 375, 775
MboI GATC 4 cut(s) 154, 165, 373, 773
MboII GAAGA 3 cut(s) 347, 368, 856
MflI RGATCY 1 cut(s) 773
MhlI GDGCHC 4 cut(s) 33, 126, 903, 929
MluCI AATT 1 cut(s) 530
MlyI GAGTC 3 cut(s) 189, 456, 959
MmeI TCCRAC 2 cut(s) 173, 637
MnlI CCTC 8 cut(s) 29, 242, 634, 701, 774, 886, 1016, 1098
MseI TTAA 2 cut(s) 35, 542
MspA1I CMGCKG 1 cut(s) 474
MspR9I CCNGG 2 cut(s) 386, 874
Mva1269I GAATGC 1 cut(s) 485
MvaI CCWGG 2 cut(s) 386, 874
MwoI GCNNNNNNNGC 5 cut(s) 130, 587, 603, 953, 1061
NdeII GATC 4 cut(s) 154, 165, 373, 773
NlaIII CATG 5 cut(s) 240, 256, 443, 1015, 1053
NmuCI GTSAC 1 cut(s) 491
NspI RCATGY 1 cut(s) 1053
PagI TCATGA 1 cut(s) 1011
PaqCI CACCTGC 1 cut(s) 995
PctI GAATGC 1 cut(s) 485
PfeI GAWTC 3 cut(s) 136, 625, 869
PfoI TCCNGGA 2 cut(s) 384, 872
PkrI GCNGC 5 cut(s) 568, 713, 859, 1078, 1081
PleI GAGTC 3 cut(s) 188, 456, 959
PpsI GAGTC 3 cut(s) 188, 456, 959
PpuMI RGGWCCY 1 cut(s) 382
PshAI GACNNNNGTC 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 382
Psp6I CCWGG 2 cut(s) 384, 872
PspGI CCWGG 2 cut(s) 384, 872
PspPI GGNCC 4 cut(s) 265, 382, 388, 829
PspPPI RGGWCCY 1 cut(s) 382
PstI CTGCAG 2 cut(s) 608, 859
PstNI CAGNNNCTG 4 cut(s) 139, 176, 385, 622
PsuI RGATCY 1 cut(s) 773
RsaI GTAC 1 cut(s) 1059
RsaNI GTAC 1 cut(s) 1058
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 2 cut(s) 35, 542
SatI GCNGC 5 cut(s) 567, 712, 858, 1077, 1080
Sau3AI GATC 4 cut(s) 154, 165, 373, 773
Sau96I GGNCC 4 cut(s) 265, 382, 388, 829
SchI GAGTC 3 cut(s) 189, 456, 959
ScrFI CCNGG 2 cut(s) 386, 874
SduI GDGCHC 4 cut(s) 33, 126, 903, 929
SfaNI GCATC 4 cut(s) 190, 225, 578, 671
SfcI CTRYAG 2 cut(s) 604, 855
SinI GGWCC 3 cut(s) 265, 382, 388
SmlI CTYRAG 2 cut(s) 20, 902
SmoI CTYRAG 2 cut(s) 20, 902
Sse9I AATT 1 cut(s) 530
SsiI CCGC 3 cut(s) 474, 711, 1069
SstI GAGCTC 1 cut(s) 126
StyD4I CCNGG 2 cut(s) 384, 872
StyI CCWWGG 1 cut(s) 778
TaaI ACNGT 3 cut(s) 163, 700, 794
TaiI ACGT 1 cut(s) 316
TaqI TCGA 1 cut(s) 150
TasI AATT 1 cut(s) 530
TatI WGTACW 1 cut(s) 1057
TauI GCSGC 1 cut(s) 714
TfiI GAWTC 3 cut(s) 136, 625, 869
Tru1I TTAA 2 cut(s) 35, 542
Tru9I TTAA 2 cut(s) 35, 542
TscAI CASTG 7 cut(s) 418, 496, 613, 623, 929, 963, 1078
TseFI GTSAC 1 cut(s) 491
TseI GCWGC 4 cut(s) 566, 857, 1076, 1079
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 1 cut(s) 269
TspGWI ACGGA 1 cut(s) 1027
TspRI CASTG 7 cut(s) 418, 496, 613, 623, 929, 963, 1078
VneI GTGCAC 1 cut(s) 925
VpaK11BI GGWCC 3 cut(s) 265, 382, 388
XceI RCATGY 1 cut(s) 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.