Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001874.1

Orthogroup ID

OG0005717

Physical Location & Seq

Genomic Coordinates Reverse (-)

34387 .. 37679

Gene Structure 3293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001874.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atggttgggaaagaaaacctcaagactgaggacttgaacttgtgctttgagaagctgatgatgattggtggtgggaaagtgaaaatggaaggaagggtaatgacagattggaaggatattccgatggagctcctgttgcagattctgacatttgtcgatgatcagacggtgatcacagcttctggagtctgtcgtggttggagagatgctatttgcttgggcatcactcgtctctccctctcatggtgtaacaagaacatgaacaacttggtcctatctcttgctcctaagtttacaaggttgcaaactctaatactacgtcaggataaaccccaacttgaagataatgctgttcagagcattgcaaacttctgttatgatcttcaggtcctggaccttagcaaaagcttcaagctcactgactgctccttgtatgccttagctcatgggtgtcctaatcttacgagactcaacatcagcggttgttctgcattcagtgacattgctcttgaatatctggctggattttgcccaaaattgaaagtattaaatctttgtggatgtgtcagggctgcatcagatagggcattgcaggctattggccgttactgcagtgagttgcagtgtctgaatctcggttggtgtgaggaagtcggtgatgttggagttatgagtttggcatatggatgccctgacctcagaactgttgacttgtgcggctgtctccaaataacagtgtgtgactcctttccatcacttcacacctgctctggaaggcactccctcatcatgagtggctgtttgaacttgacatcagtgcattgtgcatgtgctgtccaggcgcaccgcactgctgccgcatttcctcattcagctcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010286 GO:0010311 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0031146 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048581 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051302 GO:0051603 GO:0051716 GO:0051781 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901332 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905392 GO:1905393 GO:1990234 GO:2000023 GO:2000026 GO:2000069 GO:2000280

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04120 ko04150 ko05168 ko05169 ko05200 ko05203 ko05222 map04068 map04110 map04120 map04150 map05168 map05169 map05200 map05203 map05222

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

293

Amino Acids

32.1

Weight (kDa)

6.63

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21410 AT1G21410 AT1G77000 AT1G77000 AT1G77000 AT1G77000
fragaria_vesca	FvH4_2g15180 FvH4_2g15180 FvH4_2g15180
malus_domestica	MD05G1010400.v1.1 MD10G1009000.v1.1
prunus_persica	Prupe.8G012800_v2.0.a1 Prupe.8G012800_v2.0.a1 Prupe.8G012800_v2.0.a1
pyrus_communis	pycom05g00540 pycom05g00550 pycom10g00540
rosa_chinensis	RchiOBHm_Chr6g0277841
rosa_laevigata	RLG00000013264
rosa_multiflora	Rmu_co8341071.1_g000001 Rmu_sc0001874.1_g000005
rosa_roxburghii	Rroxscaffold_7G00190860
rosa_rugosa	Rorug06G0112000
rosa_samantha	Rh6AG222800 Rh6BG226300 Rh6CG228700 Rh6DG219800
rosa_wichuraiana	Rw6G019470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	773
Acc36I	ACCTGC	1 cut(s)	773
AciI	CCGC	4 cut(s)	480, 717, 847, 858
AcoI	YGGCCR	1 cut(s)	601
AcuI	CTGAAG	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	6 cut(s)	37, 341, 412, 512, 541, 805
AjnI	CCWGG	2 cut(s)	390, 837
AluBI	AGCT	7 cut(s)	55, 130, 179, 408, 415, 443, 875
AluI	AGCT	7 cut(s)	55, 130, 179, 408, 415, 443, 875
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	3 cut(s)	236, 460, 728
AlwNI	CAGNNNCTG	4 cut(s)	145, 182, 391, 628
AoxI	GGCC	1 cut(s)	601
ApeKI	GCWGC	2 cut(s)	572, 854
AspLEI	GCGC	1 cut(s)	844
AspS9I	GGNCC	3 cut(s)	271, 388, 394
AsuHPI	GGTGA	2 cut(s)	181, 668
AvaII	GGWCC	3 cut(s)	271, 388, 394
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	559, 841
BccI	CCATC	2 cut(s)	118, 760
BceAI	ACGGC	1 cut(s)	588
BciT130I	CCWGG	2 cut(s)	392, 839
BclI	TGATCA	2 cut(s)	160, 171
BcoDI	GTCTC	3 cut(s)	236, 460, 728
BfmI	CTRYAG	1 cut(s)	610
BfuAI	ACCTGC	1 cut(s)	773
BisI	GCNGC	4 cut(s)	573, 718, 855, 858
BlsI	GCNGC	4 cut(s)	574, 719, 856, 859
Bme1390I	CCNGG	2 cut(s)	392, 839
Bme18I	GGWCC	3 cut(s)	271, 388, 394
BmgT120I	GGNCC	3 cut(s)	271, 388, 394
BmrFI	CCNGG	2 cut(s)	392, 839
BmsI	GCATC	4 cut(s)	196, 231, 584, 677
BoxI	GACNNNNGTC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	204
Bpu10I	CCTNAGC	2 cut(s)	398, 439
BpuEI	CTTGAG	1 cut(s)	5
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse3DI	GCAATG	3 cut(s)	360, 501, 587
BseBI	CCWGG	2 cut(s)	392, 839
BseGI	GGATG	2 cut(s)	566, 692
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMI	GCAATG	3 cut(s)	360, 501, 587
BseMII	CTCAG	2 cut(s)	18, 712
BseXI	GCAGC	2 cut(s)	559, 841
BshFI	GGCC	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	3 cut(s)	236, 460, 728
BsmBI	CGTCTC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	491
BsnI	GGCC	1 cut(s)	603
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	160, 171, 379
BspACI	CCGC	4 cut(s)	480, 717, 847, 858
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	2 cut(s)	19, 711
BspHI	TCATGA	1 cut(s)	789
BspMAI	CTGCAG	1 cut(s)	614
BspMI	ACCTGC	1 cut(s)	773
BsrDI	GCAATG	3 cut(s)	360, 501, 587
BssMI	GATC	3 cut(s)	160, 171, 379
Bst2UI	CCWGG	2 cut(s)	392, 839
Bst4CI	ACNGT	3 cut(s)	169, 706, 736
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	5 cut(s)	27, 288, 398, 439, 698
BstF5I	GGATG	2 cut(s)	566, 692
BstHHI	GCGC	1 cut(s)	844
BstKTI	GATC	3 cut(s)	163, 174, 382
BstMAI	GTCTC	3 cut(s)	236, 460, 728
BstMBI	GATC	3 cut(s)	160, 171, 379
BstMWI	GCNNNNNNNGC	4 cut(s)	136, 593, 609, 839
BstNI	CCWGG	2 cut(s)	392, 839
BstNSI	RCATGY	1 cut(s)	831
BstPAI	GACNNNNGTC	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	390, 837
BstSFI	CTRYAG	1 cut(s)	610
BstV1I	GCAGC	2 cut(s)	559, 841
BsuRI	GGCC	1 cut(s)	603
BtsCI	GGATG	2 cut(s)	566, 692
BtsI	GCAGTG	3 cut(s)	619, 629, 849
BtsIMutI	CAGTG	7 cut(s)	417, 502, 619, 629, 741, 822, 849
BveI	ACCTGC	1 cut(s)	773
Cac8I	GCNNGC	1 cut(s)	594
CaiI	CAGNNNCTG	4 cut(s)	145, 182, 391, 628
CciI	TCATGA	1 cut(s)	789
CfoI	GCGC	1 cut(s)	844
Cfr13I	GGNCC	3 cut(s)	271, 388, 394
CviAII	CATG	5 cut(s)	243, 259, 446, 790, 828
DdeI	CTNAG	5 cut(s)	27, 288, 398, 439, 698
DpnI	GATC	3 cut(s)	162, 173, 381
DpnII	GATC	3 cut(s)	160, 171, 379
EaeI	YGGCCR	1 cut(s)	601
Ecl136II	GAGCTC	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	3 cut(s)	271, 388, 394
Eco53kI	GAGCTC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	390, 837
EcoT38I	GRGCYC	1 cut(s)	132
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	5 cut(s)	246, 262, 449, 793, 831
FatI	CATG	5 cut(s)	242, 258, 445, 789, 827
FauNDI	CATATG	1 cut(s)	682
FbaI	TGATCA	2 cut(s)	160, 171
Fnu4HI	GCNGC	4 cut(s)	573, 718, 855, 858
FokI	GGATG	2 cut(s)	573, 699
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	4 cut(s)	573, 718, 855, 858
GlaI	GCGC	1 cut(s)	843
GluI	GCNGC	4 cut(s)	573, 718, 855, 858
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	603
HhaI	GCGC	1 cut(s)	844
Hin1II	CATG	5 cut(s)	246, 262, 449, 793, 831
Hin6I	GCGC	1 cut(s)	842
HinP1I	GCGC	1 cut(s)	842
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	5 cut(s)	142, 186, 468, 631, 743
HphI	GGTGA	2 cut(s)	181, 668
Hpy166II	GTNNAC	2 cut(s)	294, 709
Hpy188I	TCNGA	7 cut(s)	123, 147, 165, 357, 580, 630, 701
Hpy188III	TCNNGA	6 cut(s)	22, 183, 323, 509, 771, 790
Hpy8I	GTNNAC	2 cut(s)	294, 709
HpyAV	CCTTC	4 cut(s)	83, 87, 106, 768
HpyCH4III	ACNGT	3 cut(s)	169, 706, 736
HpyCH4IV	ACGT	1 cut(s)	319
HpyF10VI	GCNNNNNNNGC	4 cut(s)	136, 593, 609, 839
HpyF3I	CTNAG	5 cut(s)	27, 288, 398, 439, 698
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	5 cut(s)	246, 262, 449, 793, 831
HspAI	GCGC	1 cut(s)	842
Ksp22I	TGATCA	2 cut(s)	160, 171
Kzo9I	GATC	3 cut(s)	160, 171, 379
LmnI	GCTCC	4 cut(s)	127, 135, 289, 431
Lsp1109I	GCAGC	2 cut(s)	559, 841
LweI	GCATC	4 cut(s)	196, 231, 584, 677
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	4 cut(s)	248, 497, 605, 740
MalI	GATC	3 cut(s)	162, 173, 381
MboI	GATC	3 cut(s)	160, 171, 379
MboII	GAAGA	2 cut(s)	353, 374
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	1 cut(s)	536
MlyI	GAGTC	3 cut(s)	195, 462, 737
MmeI	TCCRAC	2 cut(s)	179, 643
MnlI	CCTC	7 cut(s)	22, 29, 248, 640, 707, 794, 876
MseI	TTAA	1 cut(s)	548
MslI	CAYNNNNRTG	1 cut(s)	685
MspA1I	CMGCKG	1 cut(s)	480
MspR9I	CCNGG	2 cut(s)	392, 839
Mva1269I	GAATGC	1 cut(s)	491
MvaI	CCWGG	2 cut(s)	392, 839
MwoI	GCNNNNNNNGC	4 cut(s)	136, 593, 609, 839
NdeI	CATATG	1 cut(s)	682
NdeII	GATC	3 cut(s)	160, 171, 379
NlaIII	CATG	5 cut(s)	246, 262, 449, 793, 831
NmuCI	GTSAC	2 cut(s)	497, 740
NspI	RCATGY	1 cut(s)	831
PagI	TCATGA	1 cut(s)	789
PaqCI	CACCTGC	1 cut(s)	773
PctI	GAATGC	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	142, 631
PfoI	TCCNGGA	1 cut(s)	390
PkrI	GCNGC	4 cut(s)	574, 719, 856, 859
PleI	GAGTC	3 cut(s)	194, 462, 737
PpsI	GAGTC	3 cut(s)	194, 462, 737
PpuMI	RGGWCCY	1 cut(s)	388
PshAI	GACNNNNGTC	1 cut(s)	152
Psp124BI	GAGCTC	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	2 cut(s)	390, 837
PspGI	CCWGG	2 cut(s)	390, 837
PspPI	GGNCC	3 cut(s)	271, 388, 394
PspPPI	RGGWCCY	1 cut(s)	388
PstI	CTGCAG	1 cut(s)	614
PstNI	CAGNNNCTG	4 cut(s)	145, 182, 391, 628
RseI	CAYNNNNRTG	1 cut(s)	685
SacI	GAGCTC	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	548
SatI	GCNGC	4 cut(s)	573, 718, 855, 858
Sau3AI	GATC	3 cut(s)	160, 171, 379
Sau96I	GGNCC	3 cut(s)	271, 388, 394
SchI	GAGTC	3 cut(s)	195, 462, 737
ScrFI	CCNGG	2 cut(s)	392, 839
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	4 cut(s)	196, 231, 584, 677
SfcI	CTRYAG	1 cut(s)	610
SinI	GGWCC	3 cut(s)	271, 388, 394
SmiMI	CAYNNNNRTG	1 cut(s)	685
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	536
SsiI	CCGC	4 cut(s)	480, 717, 847, 858
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	2 cut(s)	390, 837
TaaI	ACNGT	3 cut(s)	169, 706, 736
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	1 cut(s)	156
TasI	AATT	1 cut(s)	536
TauI	GCSGC	2 cut(s)	720, 860
TfiI	GAWTC	2 cut(s)	142, 631
Tru1I	TTAA	1 cut(s)	548
Tru9I	TTAA	1 cut(s)	548
TscAI	CASTG	7 cut(s)	424, 502, 619, 629, 741, 822, 856
TseFI	GTSAC	2 cut(s)	497, 740
TseI	GCWGC	2 cut(s)	572, 854
Tsp45I	GTSAC	2 cut(s)	497, 740
TspDTI	ATGAA	1 cut(s)	275
TspRI	CASTG	7 cut(s)	424, 502, 619, 629, 741, 822, 856
VpaK11BI	GGWCC	3 cut(s)	271, 388, 394
XceI	RCATGY	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.