Rorug06G0112000

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005717
Physical Location & Seq
Forward (+)
15192040 .. 15192853
814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0112000.1

Sequence Viewer

Length: 231 bp
ATGATTTTCGACGCCAGCGGCTGTTCTAGCTCTTCTGGGTTCGTTTTCCGTCTTGCCTGCACCTGTAGACGTGTCAACCTCAACTATAGCTGGATGTTCGAAGCTGCTGGGTTGGTGTACTCTAGCTCCTCCGTTTGTTCATCGTCGAAATTCCGGGAATTGAGCCTAGGACTCCAGTTACCCGAGGAACGGAAGGTTCGTGAATTTCGGACGACTTCGGAATCCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010286 GO:0010311 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0031146 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048581 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051302 GO:0051603 GO:0051716 GO:0051781 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901332 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905392 GO:1905393 GO:1990234 GO:2000023 GO:2000026 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04068 ko04110 ko04120 ko04150 ko05168 ko05169 ko05200 ko05203 ko05222 map04068 map04110 map04120 map04150 map05168 map05169 map05200 map05203 map05222
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

76

Amino Acids

8.55

Weight (kDa)

8.88

Isoelectric Point (pI)

71.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 67
AciI CCGC 1 cut(s) 18
AcsI RAATTY 2 cut(s) 149, 203
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 189
AflIII ACRYGT 1 cut(s) 70
AjiI CACGTC 1 cut(s) 71
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 4 cut(s) 30, 90, 104, 126
AluI AGCT 4 cut(s) 30, 90, 104, 126
AlwNI CAGNNNCTG 1 cut(s) 21
Ama87I CYCGRG 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 2 cut(s) 149, 203
AspA2I CCTAGG 1 cut(s) 166
AsuC2I CCSGG 1 cut(s) 155
AsuII TTCGAA 1 cut(s) 99
AvaI CYCGRG 1 cut(s) 182
AvrII CCTAGG 1 cut(s) 166
BbvI GCAGC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 226
BcnI CCSGG 1 cut(s) 155
BfaI CTAG 3 cut(s) 27, 123, 167
BfmI CTRYAG 2 cut(s) 64, 85
BisI GCNGC 2 cut(s) 19, 105
BlnI CCTAGG 1 cut(s) 166
BlsI GCNGC 2 cut(s) 20, 106
Bme1390I CCNGG 2 cut(s) 155, 226
BmeT110I CYCGRG 1 cut(s) 182
BmgBI CACGTC 1 cut(s) 71
BmrFI CCNGG 2 cut(s) 155, 226
BpmI CTGGAG 1 cut(s) 158
Bpu14I TTCGAA 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 166, 183
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse1I ACTGG 1 cut(s) 175
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 2 cut(s) 166, 183
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 175
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 91
BseYI CCCAGC 1 cut(s) 107
BsgI GTGCAG 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 189
BsoBI CYCGRG 1 cut(s) 182
Bsp119I TTCGAA 1 cut(s) 99
BspACI CCGC 1 cut(s) 18
BspQI GCTCTTC 1 cut(s) 37
BspT104I TTCGAA 1 cut(s) 99
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 166, 183
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 37
BstACI GRCGYC 1 cut(s) 12
BstBI TTCGAA 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 16, 58
BstF5I GGATG 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 153, 224
BstSFI CTRYAG 2 cut(s) 64, 85
BstV1I GCAGC 1 cut(s) 91
BtrI CACGTC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 99
Cac8I GCNNGC 2 cut(s) 16, 58
CaiI CAGNNNCTG 1 cut(s) 21
CseI GACGC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 118
CviJI RGCY 6 cut(s) 21, 30, 90, 104, 126, 165
CviKI_1 RGCY 6 cut(s) 21, 30, 90, 104, 126, 165
CviQI GTAC 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 166
Eco88I CYCGRG 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FaiI YATR 1 cut(s) 87
FblI GTMKAC 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 19, 105
FokI GGATG 1 cut(s) 106
Fsp4HI GCNGC 2 cut(s) 19, 105
FspBI CTAG 3 cut(s) 27, 123, 167
GluI GCNGC 2 cut(s) 19, 105
GsaI CCCAGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 158
HapII CCGG 1 cut(s) 154
HgaI GACGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 12
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 2 cut(s) 171, 221
HpaII CCGG 1 cut(s) 154
Hpy166II GTNNAC 3 cut(s) 68, 76, 118
Hpy188I TCNGA 2 cut(s) 210, 220
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 3 cut(s) 68, 76, 118
Hpy99I CGWCG 2 cut(s) 14, 148
HpyAV CCTTC 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 70
Hsp92I GRCGYC 1 cut(s) 12
LguI GCTCTTC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 9 cut(s) 21, 28, 70, 76, 76, 93, 167, 188, 211
Lsp1109I GCAGC 1 cut(s) 91
MaeI CTAG 3 cut(s) 27, 123, 167
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 1 cut(s) 177
MboII GAAGA 1 cut(s) 24
MluCI AATT 3 cut(s) 149, 158, 203
MlyI GAGTC 1 cut(s) 165
MnlI CCTC 3 cut(s) 89, 139, 178
MspA1I CMGCKG 1 cut(s) 18
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 2 cut(s) 155, 226
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 27
NciI CCSGG 1 cut(s) 155
NspV TTCGAA 1 cut(s) 99
PciSI GCTCTTC 1 cut(s) 37
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PfeI GAWTC 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 153
PkrI GCNGC 2 cut(s) 20, 106
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 107
PspGI CCWGG 1 cut(s) 224
PstNI CAGNNNCTG 1 cut(s) 21
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SapI GCTCTTC 1 cut(s) 37
SatI GCNGC 2 cut(s) 19, 105
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 2 cut(s) 155, 226
SetI ASST 9 cut(s) 32, 65, 73, 81, 92, 106, 128, 198, 230
SfcI CTRYAG 2 cut(s) 64, 85
SfuI TTCGAA 1 cut(s) 99
Sse9I AATT 3 cut(s) 149, 158, 203
SsiI CCGC 1 cut(s) 18
SspMI CTAG 3 cut(s) 27, 123, 167
StyD4I CCNGG 2 cut(s) 153, 224
StyI CCWWGG 1 cut(s) 166
TaiI ACGT 1 cut(s) 73
TaqI TCGA 3 cut(s) 9, 99, 146
TasI AATT 3 cut(s) 149, 158, 203
TatI WGTACW 1 cut(s) 117
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 1 cut(s) 221
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 3 cut(s) 38, 121, 205
XapI RAATTY 2 cut(s) 149, 203
XmaJI CCTAGG 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 67
XspI CTAG 3 cut(s) 27, 123, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.