Rmu_co8341071.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8341071.1
OG0005717
Physical Location & Seq
Reverse (-)
1 .. 530
530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8341071.1_g000001.1.cds

Sequence Viewer

Length: 245 bp
atggttgggaaagaaaacctcaagactgaggacttgaacttgtgctttgagaagctgatgatgattggtggtgggaaagtgaaaatggaaggaagggtaatgacagattggaaggatattccgatggagctcctgttgcagattctgacatttgtcgatgatcagacggtgatcacagcttctggagtctgtcgtggttggagagatgctatttgcttgggcatcactcgtctctccctctcatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010286 GO:0010311 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0031146 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048581 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051302 GO:0051603 GO:0051716 GO:0051781 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901332 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905392 GO:1905393 GO:1990234 GO:2000023 GO:2000026 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04068 ko04110 ko04120 ko04150 ko05168 ko05169 ko05200 ko05203 ko05222 map04068 map04110 map04120 map04150 map05168 map05169 map05200 map05203 map05222
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

81

Amino Acids

9.08

Weight (kDa)

5.27

Isoelectric Point (pI)

20.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 3 cut(s) 55, 130, 179
AluI AGCT 3 cut(s) 55, 130, 179
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 236
AlwNI CAGNNNCTG 2 cut(s) 145, 182
AsuHPI GGTGA 1 cut(s) 181
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 132
BccI CCATC 1 cut(s) 118
BclI TGATCA 2 cut(s) 160, 171
BcoDI GTCTC 1 cut(s) 236
BmsI GCATC 2 cut(s) 196, 231
BoxI GACNNNNGTC 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 5
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
BseMII CTCAG 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 236
BsmBI CGTCTC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 2 cut(s) 160, 171
BspCNI CTCAG 1 cut(s) 19
BssMI GATC 2 cut(s) 160, 171
Bst4CI ACNGT 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 27
BstKTI GATC 2 cut(s) 163, 174
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 2 cut(s) 160, 171
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstPAI GACNNNNGTC 1 cut(s) 152
CaiI CAGNNNCTG 2 cut(s) 145, 182
CviAII CATG 1 cut(s) 243
CviJI RGCY 3 cut(s) 55, 130, 179
CviKI_1 RGCY 3 cut(s) 55, 130, 179
DdeI CTNAG 1 cut(s) 27
DpnI GATC 2 cut(s) 162, 173
DpnII GATC 2 cut(s) 160, 171
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 236
FaiI YATR 1 cut(s) 244
FbaI TGATCA 2 cut(s) 160, 171
FriOI GRGCYC 1 cut(s) 132
GsuI CTGGAG 1 cut(s) 204
HinfI GANTC 2 cut(s) 142, 186
HphI GGTGA 1 cut(s) 181
Hpy188I TCNGA 3 cut(s) 123, 147, 165
Hpy188III TCNNGA 2 cut(s) 22, 183
HpyAV CCTTC 3 cut(s) 83, 87, 106
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpyF3I CTNAG 1 cut(s) 27
Ksp22I TGATCA 2 cut(s) 160, 171
Kzo9I GATC 2 cut(s) 160, 171
LmnI GCTCC 2 cut(s) 127, 135
LpnPI CCDG 2 cut(s) 146, 168
LweI GCATC 2 cut(s) 196, 231
MalI GATC 2 cut(s) 162, 173
MboI GATC 2 cut(s) 160, 171
MhlI GDGCHC 1 cut(s) 132
MlyI GAGTC 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 2 cut(s) 22, 29
MwoI GCNNNNNNNGC 1 cut(s) 136
NdeII GATC 2 cut(s) 160, 171
PfeI GAWTC 1 cut(s) 142
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PshAI GACNNNNGTC 1 cut(s) 152
Psp124BI GAGCTC 1 cut(s) 132
PstNI CAGNNNCTG 2 cut(s) 145, 182
SacI GAGCTC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 160, 171
SchI GAGTC 1 cut(s) 195
SduI GDGCHC 1 cut(s) 132
SetI ASST 4 cut(s) 21, 57, 132, 181
SfaNI GCATC 2 cut(s) 196, 231
SgeI CNNG 8 cut(s) 34, 46, 52, 145, 195, 206, 229, 240
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SstI GAGCTC 1 cut(s) 132
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 156
TfiI GAWTC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.