Rh6DG219800

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005717
Physical Location & Seq
Reverse (-)
39042486 .. 39047330
4845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG219800.1

Sequence Viewer

Length: 852 bp
ATGAACAACTTGGTCCTATCTCTTGCTCCTAAGTTTACAAGGTTGCAAACTCTAATACTACGTCAGGATAAACCCCAACTTGAAGATAATGCTGTTCAGAGCATTGCAAACTTCTGTTATGATCTTCAGGTCCTGGACCTTAGCAAAAGCTTCAAGCTCACTGACCACTCCTTGTATGCCTTAGCTCATGGGTGTCCTAATCTTACGAGACTCAACATCAGCGGTTGTTCTGCATTCAGTGACATTGCTCTTGAATATCTGGCTGGATTTTGCCCAAAATTGAAAGTATTAAATCTTTGTGGATGTGTCAGGGCTGCATCAGATAGGGCATTGCAGGCTATTGGCCGTTACTGCAGTGAGTTGCAGTGTCTGAATCTCGGTTGGTGTGAGGAAGTCGGTGATGTTGGAGTTATGAGTTTGGCATATGGATGCCCTGACCTCAGAACTGTTGACTTGTGCGGCTGTCTCCAAATAACAGATGACAGCGTGGTTGCTTTGGCAAACGGGTGTCCTCATCTGAGATCCCTTGGCCTTTACTACTGTCAAAACATTACAGACAAGGCAATGTATTCTTTGGCCCAGAGTGTAGTGAAGAACAAGCCTGCAGCAATGTGGGAATCCAGGAAAAGCAGGAATGATGAGGAAGGGCTCAAGACGCTCAACATCAGCCAGTGCACGGCACTCACCCCTTCTGCTGTTCAAGCAGTGTGTGACTCCTTTCCATCACTTCACACCTGCTCTGGAAGACACTCCCTCATCATGAGTGGCTGTTTGAACTTGACATCCGTGCATTGTGCATGTGCTGTCCAGGCGCACCGCACTGCTGCCACCTTTCCTCATTCAGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010286 GO:0010311 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0031146 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048581 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051302 GO:0051603 GO:0051716 GO:0051781 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901332 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905392 GO:1905393 GO:1990234 GO:2000023 GO:2000026 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04068 ko04110 ko04120 ko04150 ko05168 ko05169 ko05200 ko05203 ko05222 map04068 map04110 map04120 map04150 map05168 map05169 map05200 map05203 map05222
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

283

Amino Acids

30.71

Weight (kDa)

7.04

Isoelectric Point (pI)

49.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 28 - 193 1.9e-16 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 743
Acc36I ACCTGC 1 cut(s) 743
AciI CCGC 3 cut(s) 222, 459, 817
AclWI GGATC 1 cut(s) 516
AcoI YGGCCR 1 cut(s) 343
AcuI CTGAAG 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 676
AgsI TTSAA 6 cut(s) 83, 154, 254, 283, 701, 775
AjnI CCWGG 3 cut(s) 132, 620, 807
AloI GAACNNNNNNTCC 2 cut(s) 767, 799
AluBI AGCT 4 cut(s) 150, 157, 185, 845
AluI AGCT 4 cut(s) 150, 157, 185, 845
Alw21I GWGCWC 1 cut(s) 677
Alw26I GTCTC 2 cut(s) 202, 470
Alw44I GTGCAC 1 cut(s) 673
AlwI GGATC 1 cut(s) 516
AlwNI CAGNNNCTG 2 cut(s) 133, 370
AoxI GGCC 3 cut(s) 343, 529, 576
ApaLI GTGCAC 1 cut(s) 673
ApeKI GCWGC 3 cut(s) 314, 605, 824
AspLEI GCGC 1 cut(s) 814
AspS9I GGNCC 4 cut(s) 13, 130, 136, 577
AsuHPI GGTGA 2 cut(s) 410, 676
AvaII GGWCC 3 cut(s) 13, 130, 136
BaeGI GKGCMC 1 cut(s) 677
BanII GRGCYC 1 cut(s) 651
BbsI GAAGAC 1 cut(s) 751
Bbv12I GWGCWC 1 cut(s) 677
BbvI GCAGC 3 cut(s) 301, 617, 811
BccI CCATC 1 cut(s) 730
BceAI ACGGC 2 cut(s) 330, 693
BciT130I CCWGG 3 cut(s) 134, 622, 809
BcoDI GTCTC 2 cut(s) 202, 470
BfmI CTRYAG 2 cut(s) 352, 603
BfuAI ACCTGC 1 cut(s) 743
BisI GCNGC 4 cut(s) 315, 460, 606, 825
BlsI GCNGC 4 cut(s) 316, 461, 607, 826
Bme1390I CCNGG 3 cut(s) 134, 622, 809
Bme18I GGWCC 3 cut(s) 13, 130, 136
BmgT120I GGNCC 4 cut(s) 13, 130, 136, 577
BmrFI CCNGG 3 cut(s) 134, 622, 809
BmsI GCATC 2 cut(s) 326, 419
BpiI GAAGAC 1 cut(s) 751
Bpu10I CCTNAGC 2 cut(s) 140, 181
BpuEI CTTGAG 1 cut(s) 635
BsaJI CCNNGG 1 cut(s) 526
Bsc4I CCNNNNNNNGG 1 cut(s) 676
Bse1I ACTGG 1 cut(s) 670
Bse3DI GCAATG 5 cut(s) 102, 243, 329, 570, 615
BseBI CCWGG 3 cut(s) 134, 622, 809
BseDI CCNNGG 1 cut(s) 526
BseGI GGATG 3 cut(s) 308, 434, 782
BseLI CCNNNNNNNGG 1 cut(s) 676
BseMI GCAATG 5 cut(s) 102, 243, 329, 570, 615
BseMII CTCAG 2 cut(s) 454, 509
BseNI ACTGG 1 cut(s) 670
BseSI GKGCMC 1 cut(s) 677
BseXI GCAGC 3 cut(s) 301, 617, 811
BshFI GGCC 3 cut(s) 345, 531, 578
BsiHKAI GWGCWC 1 cut(s) 677
BslI CCNNNNNNNGG 1 cut(s) 676
BsmAI GTCTC 2 cut(s) 202, 470
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 3 cut(s) 345, 531, 578
Bsp1286I GDGCHC 2 cut(s) 651, 677
Bsp143I GATC 2 cut(s) 121, 521
BspACI CCGC 3 cut(s) 222, 459, 817
BspANI GGCC 3 cut(s) 345, 531, 578
BspCNI CTCAG 2 cut(s) 453, 510
BspHI TCATGA 1 cut(s) 759
BspMAI CTGCAG 2 cut(s) 356, 607
BspMI ACCTGC 1 cut(s) 743
BspPI GGATC 1 cut(s) 516
BsrDI GCAATG 5 cut(s) 102, 243, 329, 570, 615
BsrI ACTGG 1 cut(s) 670
BssECI CCNNGG 1 cut(s) 526
BssMI GATC 2 cut(s) 121, 521
BssT1I CCWWGG 1 cut(s) 526
Bst2UI CCWGG 3 cut(s) 134, 622, 809
Bst4CI ACNGT 2 cut(s) 448, 542
BstC8I GCNNGC 2 cut(s) 336, 603
BstDEI CTNAG 5 cut(s) 30, 140, 181, 440, 518
BstF5I GGATG 3 cut(s) 308, 434, 782
BstHHI GCGC 1 cut(s) 814
BstKTI GATC 2 cut(s) 124, 524
BstMAI GTCTC 2 cut(s) 202, 470
BstMBI GATC 2 cut(s) 121, 521
BstMWI GCNNNNNNNGC 5 cut(s) 335, 351, 655, 701, 809
BstNI CCWGG 3 cut(s) 134, 622, 809
BstNSI RCATGY 1 cut(s) 801
BstSCI CCNGG 3 cut(s) 132, 620, 807
BstSFI CTRYAG 2 cut(s) 352, 603
BstSLI GKGCMC 1 cut(s) 677
BstV1I GCAGC 3 cut(s) 301, 617, 811
BstV2I GAAGAC 1 cut(s) 751
BstX2I RGATCY 1 cut(s) 521
BstYI RGATCY 1 cut(s) 521
BsuRI GGCC 3 cut(s) 345, 531, 578
BtsCI GGATG 3 cut(s) 308, 434, 782
BtsI GCAGTG 4 cut(s) 361, 371, 711, 819
BtsIMutI CAGTG 7 cut(s) 159, 244, 361, 371, 677, 711, 819
BveI ACCTGC 1 cut(s) 743
Cac8I GCNNGC 2 cut(s) 336, 603
CaiI CAGNNNCTG 2 cut(s) 133, 370
CciI TCATGA 1 cut(s) 759
CfoI GCGC 1 cut(s) 814
Cfr13I GGNCC 4 cut(s) 13, 130, 136, 577
CseI GACGC 1 cut(s) 664
CviAII CATG 3 cut(s) 188, 760, 798
DdeI CTNAG 5 cut(s) 30, 140, 181, 440, 518
DpnI GATC 2 cut(s) 123, 523
DpnII GATC 2 cut(s) 121, 521
EaeI YGGCCR 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 526
Eco24I GRGCYC 1 cut(s) 651
Eco47I GGWCC 3 cut(s) 13, 130, 136
Eco57I CTGAAG 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 130
EcoRII CCWGG 3 cut(s) 132, 620, 807
EcoT14I CCWWGG 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 651
ErhI CCWWGG 1 cut(s) 526
FaeI CATG 3 cut(s) 191, 763, 801
FaiI YATR 8 cut(s) 120, 177, 189, 413, 424, 426, 761, 799
FatI CATG 3 cut(s) 187, 759, 797
FauNDI CATATG 1 cut(s) 424
Fnu4HI GCNGC 4 cut(s) 315, 460, 606, 825
FokI GGATG 3 cut(s) 315, 441, 769
FriOI GRGCYC 1 cut(s) 651
Fsp4HI GCNGC 4 cut(s) 315, 460, 606, 825
GlaI GCGC 1 cut(s) 813
GluI GCNGC 4 cut(s) 315, 460, 606, 825
HaeIII GGCC 3 cut(s) 345, 531, 578
HgaI GACGC 1 cut(s) 664
HhaI GCGC 1 cut(s) 814
Hin1II CATG 3 cut(s) 191, 763, 801
Hin6I GCGC 1 cut(s) 812
HinP1I GCGC 1 cut(s) 812
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HindIII AAGCTT 1 cut(s) 148
HinfI GANTC 4 cut(s) 210, 373, 617, 713
HphI GGTGA 2 cut(s) 410, 676
Hpy166II GTNNAC 3 cut(s) 36, 451, 675
Hpy188I TCNGA 5 cut(s) 99, 322, 372, 443, 519
Hpy188III TCNNGA 5 cut(s) 65, 251, 652, 741, 760
Hpy8I GTNNAC 3 cut(s) 36, 451, 675
HpyAV CCTTC 2 cut(s) 638, 699
HpyCH4III ACNGT 2 cut(s) 448, 542
HpyCH4IV ACGT 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 5 cut(s) 335, 351, 655, 701, 809
HpyF3I CTNAG 5 cut(s) 30, 140, 181, 440, 518
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 3 cut(s) 191, 763, 801
HspAI GCGC 1 cut(s) 812
Kzo9I GATC 2 cut(s) 121, 521
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 3 cut(s) 301, 617, 811
LweI GCATC 2 cut(s) 326, 419
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 3 cut(s) 239, 347, 710
MalI GATC 2 cut(s) 123, 523
MboI GATC 2 cut(s) 121, 521
MboII GAAGA 4 cut(s) 95, 116, 604, 756
MflI RGATCY 1 cut(s) 521
MhlI GDGCHC 2 cut(s) 651, 677
MluCI AATT 1 cut(s) 278
MlyI GAGTC 2 cut(s) 204, 707
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 6 cut(s) 382, 449, 522, 634, 764, 846
MseI TTAA 1 cut(s) 290
MslI CAYNNNNRTG 1 cut(s) 427
MspA1I CMGCKG 1 cut(s) 222
MspR9I CCNGG 3 cut(s) 134, 622, 809
Mva1269I GAATGC 1 cut(s) 233
MvaI CCWGG 3 cut(s) 134, 622, 809
MwoI GCNNNNNNNGC 5 cut(s) 335, 351, 655, 701, 809
NdeI CATATG 1 cut(s) 424
NdeII GATC 2 cut(s) 121, 521
NlaIII CATG 3 cut(s) 191, 763, 801
NmuCI GTSAC 2 cut(s) 239, 710
NspI RCATGY 1 cut(s) 801
PagI TCATGA 1 cut(s) 759
PaqCI CACCTGC 1 cut(s) 743
PctI GAATGC 1 cut(s) 233
PfeI GAWTC 2 cut(s) 373, 617
PfoI TCCNGGA 2 cut(s) 132, 620
PkrI GCNGC 4 cut(s) 316, 461, 607, 826
PleI GAGTC 2 cut(s) 204, 707
PpsI GAGTC 2 cut(s) 204, 707
PpuMI RGGWCCY 1 cut(s) 130
Psp5II RGGWCCY 1 cut(s) 130
Psp6I CCWGG 3 cut(s) 132, 620, 807
PspGI CCWGG 3 cut(s) 132, 620, 807
PspPI GGNCC 4 cut(s) 13, 130, 136, 577
PspPPI RGGWCCY 1 cut(s) 130
PstI CTGCAG 2 cut(s) 356, 607
PstNI CAGNNNCTG 2 cut(s) 133, 370
PsuI RGATCY 1 cut(s) 521
RseI CAYNNNNRTG 1 cut(s) 427
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 4 cut(s) 315, 460, 606, 825
Sau3AI GATC 2 cut(s) 121, 521
Sau96I GGNCC 4 cut(s) 13, 130, 136, 577
SchI GAGTC 2 cut(s) 204, 707
ScrFI CCNGG 3 cut(s) 134, 622, 809
SduI GDGCHC 2 cut(s) 651, 677
SfaNI GCATC 2 cut(s) 326, 419
SfcI CTRYAG 2 cut(s) 352, 603
SinI GGWCC 3 cut(s) 13, 130, 136
SmiMI CAYNNNNRTG 1 cut(s) 427
SmlI CTYRAG 1 cut(s) 650
SmoI CTYRAG 1 cut(s) 650
Sse9I AATT 1 cut(s) 278
SsiI CCGC 3 cut(s) 222, 459, 817
StyD4I CCNGG 3 cut(s) 132, 620, 807
StyI CCWWGG 1 cut(s) 526
TaaI ACNGT 2 cut(s) 448, 542
TaiI ACGT 1 cut(s) 64
TasI AATT 1 cut(s) 278
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 2 cut(s) 373, 617
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TscAI CASTG 7 cut(s) 166, 244, 361, 371, 677, 711, 826
TseFI GTSAC 2 cut(s) 239, 710
TseI GCWGC 3 cut(s) 314, 605, 824
Tsp45I GTSAC 2 cut(s) 239, 710
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 775
TspRI CASTG 7 cut(s) 166, 244, 361, 371, 677, 711, 826
VneI GTGCAC 1 cut(s) 673
VpaK11BI GGWCC 3 cut(s) 13, 130, 136
XceI RCATGY 1 cut(s) 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.