Rh6BG226300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005717
Physical Location & Seq
Reverse (-)
42678742 .. 42681926
3185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG226300.1

Sequence Viewer

Length: 660 bp
ATGGTTGGGAAAGAAAACCTCAAGACTGAGGACTTGAACTTGTGCTTTGAGAAGCTGATGATGATTGGTGGTGGGAAAGTGAAAATGGAAGGAAGGGAAATGACAGATTGGAAGGATATTCCGATGGAGCTCCTGTTGCAGATTCTGACACTTGTCGATGATCAGACGGTGATCACAGCTTCTGGAGTCTGTCGTGGTTGGAGAGATGCTATTTGCTTGGGCATCACTCGTCTCTCCCTCTCATGTTTTGTTACTGTTGGGAACCCAGCATGGATTCCTTCAATGGATGACAGCGTGGTTGCTTTGGCAAACGGGTGTCCTCATCTGAGATCCCTTGGCCTTTACTACTGTCAAAACATTACAGACAAGGCAATGTATTCTTTGGCCCAGAGTGTAGTGAAGAACAAGCCTGCAGCAATGTGGGAATCCAGGAAAAGCAGGAATGATGAGGAAGGGCTCAAGACGCTCAACATCAGCCAGTGCACGGCACTCACCCCTTCTGCTGTTCAAGCAGTGTGCGACTCCTTTCCATCACTTCACACCTGCTCTGGAAGGCACTCCCTCATCATGAGTGGCTGTTTGAACTTGACATCCGTGCATTGTGCATGTGCTGTCCAGGCGCACCGCACTGCTGCCGCATTTCCTCATTCAGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010286 GO:0010311 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0031146 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048581 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051302 GO:0051603 GO:0051716 GO:0051781 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901332 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905392 GO:1905393 GO:1990234 GO:2000023 GO:2000026 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04068 ko04110 ko04120 ko04150 ko05168 ko05169 ko05200 ko05203 ko05222 map04068 map04110 map04120 map04150 map05168 map05169 map05200 map05203 map05222
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

219

Amino Acids

23.85

Weight (kDa)

7.01

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 37 - 72 5.8e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 551
Acc36I ACCTGC 1 cut(s) 551
AciI CCGC 2 cut(s) 625, 636
AclWI GGATC 1 cut(s) 324
AfiI CCNNNNNNNGG 1 cut(s) 484
AgsI TTSAA 4 cut(s) 37, 282, 509, 583
AjnI CCWGG 2 cut(s) 428, 615
AloI GAACNNNNNNTCC 2 cut(s) 575, 607
AluBI AGCT 4 cut(s) 55, 130, 179, 653
AluI AGCT 4 cut(s) 55, 130, 179, 653
Alw21I GWGCWC 2 cut(s) 132, 485
Alw26I GTCTC 1 cut(s) 236
Alw44I GTGCAC 1 cut(s) 481
AlwI GGATC 1 cut(s) 324
AlwNI CAGNNNCTG 2 cut(s) 145, 182
AoxI GGCC 2 cut(s) 337, 384
ApaLI GTGCAC 1 cut(s) 481
ApeKI GCWGC 2 cut(s) 413, 632
AspLEI GCGC 1 cut(s) 622
AspS9I GGNCC 1 cut(s) 385
AsuHPI GGTGA 2 cut(s) 181, 484
BaeGI GKGCMC 1 cut(s) 485
BanII GRGCYC 2 cut(s) 132, 459
Bbv12I GWGCWC 2 cut(s) 132, 485
BbvI GCAGC 2 cut(s) 425, 619
BccI CCATC 2 cut(s) 118, 538
BceAI ACGGC 1 cut(s) 501
BciT130I CCWGG 2 cut(s) 430, 617
BclI TGATCA 2 cut(s) 160, 171
BcoDI GTCTC 1 cut(s) 236
BfmI CTRYAG 1 cut(s) 411
BfuAI ACCTGC 1 cut(s) 551
BisI GCNGC 3 cut(s) 414, 633, 636
BlsI GCNGC 3 cut(s) 415, 634, 637
Bme1390I CCNGG 2 cut(s) 430, 617
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 1 cut(s) 263
BmrFI CCNGG 2 cut(s) 430, 617
BmsI GCATC 2 cut(s) 196, 231
BoxI GACNNNNGTC 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 204
BpuEI CTTGAG 2 cut(s) 5, 443
BsaJI CCNNGG 1 cut(s) 334
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse1I ACTGG 1 cut(s) 478
Bse3DI GCAATG 2 cut(s) 378, 423
BseBI CCWGG 2 cut(s) 430, 617
BseDI CCNNGG 1 cut(s) 334
BseGI GGATG 2 cut(s) 292, 590
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMI GCAATG 2 cut(s) 378, 423
BseMII CTCAG 2 cut(s) 18, 317
BseNI ACTGG 1 cut(s) 478
BseSI GKGCMC 1 cut(s) 485
BseXI GCAGC 2 cut(s) 425, 619
BseYI CCCAGC 1 cut(s) 265
BshFI GGCC 2 cut(s) 339, 386
BsiHKAI GWGCWC 2 cut(s) 132, 485
BslI CCNNNNNNNGG 1 cut(s) 484
BsmAI GTCTC 1 cut(s) 236
BsmBI CGTCTC 1 cut(s) 236
BsnI GGCC 2 cut(s) 339, 386
Bsp1286I GDGCHC 3 cut(s) 132, 459, 485
Bsp143I GATC 3 cut(s) 160, 171, 329
BspACI CCGC 2 cut(s) 625, 636
BspANI GGCC 2 cut(s) 339, 386
BspCNI CTCAG 2 cut(s) 19, 318
BspHI TCATGA 1 cut(s) 567
BspLI GGNNCC 1 cut(s) 263
BspMAI CTGCAG 1 cut(s) 415
BspMI ACCTGC 1 cut(s) 551
BspPI GGATC 1 cut(s) 324
BsrDI GCAATG 2 cut(s) 378, 423
BsrI ACTGG 1 cut(s) 478
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 3 cut(s) 160, 171, 329
BssT1I CCWWGG 1 cut(s) 334
Bst2UI CCWGG 2 cut(s) 430, 617
Bst4CI ACNGT 3 cut(s) 169, 256, 350
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 2 cut(s) 27, 326
BstF5I GGATG 2 cut(s) 292, 590
BstHHI GCGC 1 cut(s) 622
BstKTI GATC 3 cut(s) 163, 174, 332
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 3 cut(s) 160, 171, 329
BstMWI GCNNNNNNNGC 4 cut(s) 136, 463, 509, 617
BstNI CCWGG 2 cut(s) 430, 617
BstNSI RCATGY 1 cut(s) 609
BstPAI GACNNNNGTC 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 428, 615
BstSFI CTRYAG 1 cut(s) 411
BstSLI GKGCMC 1 cut(s) 485
BstV1I GCAGC 2 cut(s) 425, 619
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
BsuRI GGCC 2 cut(s) 339, 386
BtsCI GGATG 2 cut(s) 292, 590
BtsI GCAGTG 2 cut(s) 519, 627
BtsIMutI CAGTG 3 cut(s) 485, 519, 627
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 1 cut(s) 411
CaiI CAGNNNCTG 2 cut(s) 145, 182
CciI TCATGA 1 cut(s) 567
CfoI GCGC 1 cut(s) 622
Cfr13I GGNCC 1 cut(s) 385
CseI GACGC 1 cut(s) 472
CviAII CATG 4 cut(s) 243, 270, 568, 606
DdeI CTNAG 2 cut(s) 27, 326
DpnI GATC 3 cut(s) 162, 173, 331
DpnII GATC 3 cut(s) 160, 171, 329
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 334
Eco24I GRGCYC 2 cut(s) 132, 459
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 428, 615
EcoT14I CCWWGG 1 cut(s) 334
EcoT38I GRGCYC 2 cut(s) 132, 459
ErhI CCWWGG 1 cut(s) 334
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 4 cut(s) 246, 273, 571, 609
FaiI YATR 4 cut(s) 244, 271, 569, 607
FatI CATG 4 cut(s) 242, 269, 567, 605
FbaI TGATCA 2 cut(s) 160, 171
Fnu4HI GCNGC 3 cut(s) 414, 633, 636
FokI GGATG 2 cut(s) 299, 577
FriOI GRGCYC 2 cut(s) 132, 459
Fsp4HI GCNGC 3 cut(s) 414, 633, 636
GlaI GCGC 1 cut(s) 621
GluI GCNGC 3 cut(s) 414, 633, 636
GsaI CCCAGC 1 cut(s) 269
GsuI CTGGAG 1 cut(s) 204
HaeIII GGCC 2 cut(s) 339, 386
HgaI GACGC 1 cut(s) 472
HhaI GCGC 1 cut(s) 622
Hin1II CATG 4 cut(s) 246, 273, 571, 609
Hin6I GCGC 1 cut(s) 620
HinP1I GCGC 1 cut(s) 620
HinfI GANTC 5 cut(s) 142, 186, 274, 425, 521
HphI GGTGA 2 cut(s) 181, 484
Hpy166II GTNNAC 1 cut(s) 483
Hpy188I TCNGA 4 cut(s) 123, 147, 165, 327
Hpy188III TCNNGA 5 cut(s) 22, 183, 460, 549, 568
Hpy8I GTNNAC 1 cut(s) 483
HpyAV CCTTC 7 cut(s) 83, 87, 106, 288, 446, 507, 546
HpyCH4III ACNGT 3 cut(s) 169, 256, 350
HpyCH4V TGCA 5 cut(s) 139, 413, 483, 598, 605
HpyF10VI GCNNNNNNNGC 4 cut(s) 136, 463, 509, 617
HpyF3I CTNAG 2 cut(s) 27, 326
Hsp92II CATG 4 cut(s) 246, 273, 571, 609
HspAI GCGC 1 cut(s) 620
Ksp22I TGATCA 2 cut(s) 160, 171
Kzo9I GATC 3 cut(s) 160, 171, 329
LmnI GCTCC 2 cut(s) 127, 135
Lsp1109I GCAGC 2 cut(s) 425, 619
LweI GCATC 2 cut(s) 196, 231
MaeIII GTNAC 1 cut(s) 250
MalI GATC 3 cut(s) 162, 173, 331
MboI GATC 3 cut(s) 160, 171, 329
MboII GAAGA 1 cut(s) 412
MflI RGATCY 1 cut(s) 329
MhlI GDGCHC 3 cut(s) 132, 459, 485
MlyI GAGTC 2 cut(s) 195, 515
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 7 cut(s) 22, 29, 248, 330, 442, 572, 654
MspR9I CCNGG 2 cut(s) 430, 617
MvaI CCWGG 2 cut(s) 430, 617
MwoI GCNNNNNNNGC 4 cut(s) 136, 463, 509, 617
NdeII GATC 3 cut(s) 160, 171, 329
NlaIII CATG 4 cut(s) 246, 273, 571, 609
NlaIV GGNNCC 1 cut(s) 263
NspI RCATGY 1 cut(s) 609
PagI TCATGA 1 cut(s) 567
PaqCI CACCTGC 1 cut(s) 551
PfeI GAWTC 3 cut(s) 142, 274, 425
PfoI TCCNGGA 1 cut(s) 428
PkrI GCNGC 3 cut(s) 415, 634, 637
PleI GAGTC 2 cut(s) 194, 515
PpsI GAGTC 2 cut(s) 194, 515
PshAI GACNNNNGTC 1 cut(s) 152
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 428, 615
PspFI CCCAGC 1 cut(s) 265
PspGI CCWGG 2 cut(s) 428, 615
PspN4I GGNNCC 1 cut(s) 263
PspPI GGNCC 1 cut(s) 385
PstI CTGCAG 1 cut(s) 415
PstNI CAGNNNCTG 2 cut(s) 145, 182
PsuI RGATCY 1 cut(s) 329
SacI GAGCTC 1 cut(s) 132
SatI GCNGC 3 cut(s) 414, 633, 636
Sau3AI GATC 3 cut(s) 160, 171, 329
Sau96I GGNCC 1 cut(s) 385
SchI GAGTC 2 cut(s) 195, 515
ScrFI CCNGG 2 cut(s) 430, 617
SduI GDGCHC 3 cut(s) 132, 459, 485
SetI ASST 6 cut(s) 21, 57, 132, 181, 545, 655
SfaNI GCATC 2 cut(s) 196, 231
SfcI CTRYAG 1 cut(s) 411
SmlI CTYRAG 2 cut(s) 20, 458
SmoI CTYRAG 2 cut(s) 20, 458
SsiI CCGC 2 cut(s) 625, 636
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 2 cut(s) 428, 615
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 3 cut(s) 169, 256, 350
TaqI TCGA 1 cut(s) 156
TauI GCSGC 1 cut(s) 638
TfiI GAWTC 3 cut(s) 142, 274, 425
TscAI CASTG 3 cut(s) 485, 519, 634
TseI GCWGC 2 cut(s) 413, 632
TspGWI ACGGA 1 cut(s) 583
TspRI CASTG 3 cut(s) 485, 519, 634
VneI GTGCAC 1 cut(s) 481
XceI RCATGY 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.