Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009977

Physical Location & Seq

Genomic Coordinates Forward (+)

7696427 .. 7697831

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G21910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGTGAAACAAGAACGCAAGATCCAAACCAGCAGCACAAAAAAGGAAATGCCTTTGTCATCATCACCATCTTCTTCTTCTTCTTCATCTTCTTCCTCGTCTTCGTCTTCGTGTAAGAACAAGAACAAGAAGAGTAAGATTAAGAAGTACAAAGGAGTGAGGATGAGAAGTTGGGGATCATGGGTCTCTGAGATTAGGGCACCAAATCAAAAGACAAGGATTTGGTTAGGTTCTTACTCAACAGCTGAAGCAGCTGCTAGAGCTTACGATGTTGCACTCTTATGTCTCAAAGGCCCTCAAGCCAATCTCAACTTCCCTACTTCTTCTTCTTCTCATCATCTTCTTGATAATCTCTTAGATGAAAATACCCTTTTGTCCCCCAAATCCATCCAAAGAGTAGCTGCTCAAGCTGCCAACTCATTTAACCATTTTGCCCCTACTTCATCAGCCGTCTCGTCACCGTCCGATCATGATCATCACCATGATGATGGGATGCAATCTTTGATGGGATCTTTTGTGGACAATCATGTGTCTTTGATGGATTCAACATCTTCATGGTATGATGATCATAATGGGATGTTCTTGTTTGATAATGGAGCTCCATTCAATTACTCTCCTCAACTAAACTCGACGACGATGCTCGATGAATACTTCTACGAAGATGCTGACATTCCGCTTTGGAGTTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002376 GO:0002682 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009607 GO:0009611 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009861 GO:0009863 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010675 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032870 GO:0032881 GO:0032885 GO:0033554 GO:0034605 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071497 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1900030 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

230

Amino Acids

25.48

Weight (kDa)

7.13

Isoelectric Point (pI)

56.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	49 - 98	2.9e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21910 AT1G44830 AT1G77640
fragaria_vesca	FvH4_2g26630
malus_domestica	MD08G1166100.v1.1 MD15G1352400.v1.1
prunus_persica	Prupe.1G500900_v2.0.a1
pyrus_communis	pycom08g14230 pycom15g31590
rosa_chinensis	RchiOBHm_Chr6g0295481
rosa_laevigata	RLG00000011797
rosa_multiflora	Rmu_co8378119.1_g000001 Rmu_sc0005712.1_g000029 Rmu_sc0030312.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172440
rosa_rugosa	Rorug06G0251300
rosa_samantha	Rh6AG364500 Rh6BG372800 Rh6CG379100 Rh6DG365500
rosa_wichuraiana	Rw6G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	199
AciI	CCGC	1 cut(s)	674
AclWI	GGATC	3 cut(s)	16, 184, 517
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	546, 607, 688
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AloI	GAACNNNNNNTCC	1 cut(s)	38
AluBI	AGCT	6 cut(s)	245, 254, 263, 401, 410, 599
AluI	AGCT	6 cut(s)	245, 254, 263, 401, 410, 599
Alw21I	GWGCWC	1 cut(s)	601
Alw26I	GTCTC	3 cut(s)	190, 290, 457
AlwI	GGATC	3 cut(s)	16, 184, 517
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	5 cut(s)	33, 251, 254, 401, 410
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	4 cut(s)	16, 57, 450, 470
BaeGI	GKGCMC	1 cut(s)	202
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	601
BbsI	GAAGAC	2 cut(s)	93, 99
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	5 cut(s)	45, 241, 263, 388, 397
BccI	CCATC	5 cut(s)	76, 395, 482, 499, 532
BceAI	ACGGC	1 cut(s)	434
BcgI	CGANNNNNNTGC	2 cut(s)	619, 653
BclI	TGATCA	2 cut(s)	472, 565
BcoDI	GTCTC	3 cut(s)	190, 290, 457
BfaI	CTAG	1 cut(s)	258
BisI	GCNGC	5 cut(s)	34, 252, 255, 402, 411
BlsI	GCNGC	5 cut(s)	35, 253, 256, 403, 412
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	201
BmsI	GCATC	3 cut(s)	483, 627, 652
BpiI	GAAGAC	2 cut(s)	93, 99
BpuEI	CTTGAG	2 cut(s)	282, 390
BsaBI	GATNNNNATC	1 cut(s)	471
BsaI	GGTCTC	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	471
BseGI	GGATG	4 cut(s)	168, 387, 498, 582
BseJI	GATNNNNATC	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	606
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	5 cut(s)	45, 241, 263, 388, 397
BshFI	GGCC	1 cut(s)	294
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	601
BslFI	GGGAC	1 cut(s)	361
BsmAI	GTCTC	3 cut(s)	190, 290, 457
BsmBI	CGTCTC	1 cut(s)	457
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	1 cut(s)	294
Bso31I	GGTCTC	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	202, 601
Bsp143I	GATC	6 cut(s)	21, 176, 466, 472, 509, 565
BspACI	CCGC	1 cut(s)	674
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	201
BspPI	GGATC	3 cut(s)	16, 184, 517
BspT107I	GGYRCC	1 cut(s)	199
BspTNI	GGTCTC	1 cut(s)	190
BssMI	GATC	6 cut(s)	21, 176, 466, 472, 509, 565
Bst4CI	ACNGT	1 cut(s)	462
Bst6I	CTCTTC	1 cut(s)	125
BstDEI	CTNAG	2 cut(s)	189, 355
BstF5I	GGATG	4 cut(s)	168, 387, 498, 582
BstKTI	GATC	6 cut(s)	24, 179, 469, 475, 512, 568
BstMAI	GTCTC	3 cut(s)	190, 290, 457
BstMBI	GATC	6 cut(s)	21, 176, 466, 472, 509, 565
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 260, 407, 410
BstSLI	GKGCMC	1 cut(s)	202
BstV1I	GCAGC	5 cut(s)	45, 241, 263, 388, 397
BstV2I	GAAGAC	2 cut(s)	93, 99
BstX2I	RGATCY	2 cut(s)	21, 509
BstXI	CCANNNNNNTGG	1 cut(s)	488
BstYI	RGATCY	2 cut(s)	21, 509
BsuRI	GGCC	1 cut(s)	294
BtsCI	GGATG	4 cut(s)	168, 387, 498, 582
CciI	TCATGA	1 cut(s)	469
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	5 cut(s)	180, 470, 482, 527, 555
CviJI	RGCY	9 cut(s)	245, 254, 263, 294, 302, 401, 410, 449, 599
CviKI_1	RGCY	9 cut(s)	245, 254, 263, 294, 302, 401, 410, 449, 599
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	189, 355
DpnI	GATC	6 cut(s)	23, 178, 468, 474, 511, 567
DpnII	GATC	6 cut(s)	21, 176, 466, 472, 509, 565
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	599
Eco24I	GRGCYC	1 cut(s)	601
Eco31I	GGTCTC	1 cut(s)	190
Eco53kI	GAGCTC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	599
EcoO109I	RGGNCCY	1 cut(s)	293
EcoT38I	GRGCYC	1 cut(s)	601
Esp3I	CGTCTC	1 cut(s)	457
FaeI	CATG	5 cut(s)	183, 473, 485, 530, 558
FaiI	YATR	8 cut(s)	181, 283, 471, 483, 528, 556, 561, 570
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	5 cut(s)	179, 469, 481, 526, 554
FbaI	TGATCA	2 cut(s)	472, 565
Fnu4HI	GCNGC	5 cut(s)	34, 252, 255, 402, 411
FokI	GGATG	4 cut(s)	175, 374, 505, 589
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	5 cut(s)	34, 252, 255, 402, 411
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	5 cut(s)	34, 252, 255, 402, 411
HaeIII	GGCC	1 cut(s)	294
Hin1II	CATG	5 cut(s)	183, 473, 485, 530, 558
HinfI	GANTC	1 cut(s)	542
HphI	GGTGA	4 cut(s)	16, 57, 450, 470
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	2 cut(s)	190, 466
Hpy188III	TCNNGA	2 cut(s)	344, 470
Hpy8I	GTNNAC	1 cut(s)	520
Hpy99I	CGWCG	2 cut(s)	634, 637
HpyCH4III	ACNGT	1 cut(s)	462
HpyCH4V	TGCA	2 cut(s)	275, 496
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 260, 407, 410
HpyF3I	CTNAG	2 cut(s)	189, 355
Hsp92II	CATG	5 cut(s)	183, 473, 485, 530, 558
Ksp22I	TGATCA	2 cut(s)	472, 565
Kzo9I	GATC	6 cut(s)	21, 176, 466, 472, 509, 565
LmnI	GCTCC	2 cut(s)	596, 604
LpnPI	CCDG	1 cut(s)	43
Lsp1109I	GCAGC	5 cut(s)	45, 241, 263, 388, 397
LweI	GCATC	3 cut(s)	483, 627, 652
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	456
MalI	GATC	6 cut(s)	23, 178, 468, 474, 511, 567
MboI	GATC	6 cut(s)	21, 176, 466, 472, 509, 565
MflI	RGATCY	2 cut(s)	21, 509
MhlI	GDGCHC	2 cut(s)	202, 601
MluCI	AATT	2 cut(s)	607, 688
MnlI	CCTC	4 cut(s)	106, 153, 306, 627
MseI	TTAA	3 cut(s)	141, 423, 691
MslI	CAYNNNNRTG	5 cut(s)	280, 480, 483, 486, 553
MspA1I	CMGCKG	2 cut(s)	245, 254
MwoI	GCNNNNNNNGC	4 cut(s)	251, 260, 407, 410
NdeII	GATC	6 cut(s)	21, 176, 466, 472, 509, 565
NlaIII	CATG	5 cut(s)	183, 473, 485, 530, 558
NlaIV	GGNNCC	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	456
PagI	TCATGA	1 cut(s)	469
PfeI	GAWTC	1 cut(s)	542
PkrI	GCNGC	5 cut(s)	35, 253, 256, 403, 412
Psp124BI	GAGCTC	1 cut(s)	601
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	293
PsuI	RGATCY	2 cut(s)	21, 509
PvuII	CAGCTG	2 cut(s)	245, 254
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	5 cut(s)	280, 480, 483, 486, 553
SacI	GAGCTC	1 cut(s)	601
SaqAI	TTAA	3 cut(s)	141, 423, 691
SatI	GCNGC	5 cut(s)	34, 252, 255, 402, 411
Sau3AI	GATC	6 cut(s)	21, 176, 466, 472, 509, 565
Sau96I	GGNCC	1 cut(s)	293
SduI	GDGCHC	2 cut(s)	202, 601
SetI	ASST	7 cut(s)	232, 247, 256, 265, 403, 412, 601
SfaNI	GCATC	3 cut(s)	483, 627, 652
SmiMI	CAYNNNNRTG	5 cut(s)	280, 480, 483, 486, 553
SmlI	CTYRAG	2 cut(s)	297, 405
SmoI	CTYRAG	2 cut(s)	297, 405
Sse9I	AATT	2 cut(s)	607, 688
SsiI	CCGC	1 cut(s)	674
SspMI	CTAG	1 cut(s)	258
SstI	GAGCTC	1 cut(s)	601
TaaI	ACNGT	1 cut(s)	462
TaqI	TCGA	2 cut(s)	629, 642
TasI	AATT	2 cut(s)	607, 688
TatI	WGTACW	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	3 cut(s)	141, 423, 691
Tru9I	TTAA	3 cut(s)	141, 423, 691
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	5 cut(s)	33, 251, 254, 401, 410
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	5 cut(s)	75, 375, 432, 543, 660
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.