Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009977

Physical Location & Seq

Genomic Coordinates Reverse (-)

39695804 .. 39696257

Gene Structure 454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0251300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCAGCCAGCCAACAAGTATGTCTCCACGGGTCTCCTTCAACCTCCAAGCCAAGCCGCCTCCTCTCCTCCAGATCCTCGTCTCGAATCTCAGCATGGAATCGACTGTGAAGCACGCCCTGGTGGTGAAGGTGATGGGCCGGACTGGATCCAGAGGTCAGGTGACCCAAGTCCGAGTCAAATTTCTCGACGACCAGAACCGGTTCATCATGAGGAACGTCAAGGGACCGGTCCGGGAGGGCGACATCCTCACCCTGCTCGAGTCCGAGAGAGAAGCAAGAAGGTTGCGTTGATGGGTCTTGGTCTCCGTCTTCAAAGCTATGTTCTTTGCTTTTTACTGGGTTTATGTTTTGTGGTGTTGATTAGCGAGAAAGACTGGTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

128

Amino Acids

14.06

Weight (kDa)

7.8

Isoelectric Point (pI)

71.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21910 AT1G44830 AT1G77640
fragaria_vesca	FvH4_2g26630
malus_domestica	MD08G1166100.v1.1 MD15G1352400.v1.1
prunus_persica	Prupe.1G500900_v2.0.a1
pyrus_communis	pycom08g14230 pycom15g31590
rosa_chinensis	RchiOBHm_Chr6g0295481
rosa_laevigata	RLG00000011797
rosa_multiflora	Rmu_co8378119.1_g000001 Rmu_sc0005712.1_g000029 Rmu_sc0030312.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172440
rosa_rugosa	Rorug06G0251300
rosa_samantha	Rh6AG364500 Rh6BG372800 Rh6CG379100 Rh6DG365500
rosa_wichuraiana	Rw6G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	57
AclWI	GGATC	3 cut(s)	68, 142, 155
AcsI	RAATTY	1 cut(s)	180
AgeI	ACCGGT	2 cut(s)	199, 227
AgsI	TTSAA	2 cut(s)	41, 314
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
Alw26I	GTCTC	4 cut(s)	28, 38, 86, 308
AlwI	GGATC	3 cut(s)	68, 142, 155
Ama87I	CYCGRG	1 cut(s)	258
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	180
AsiGI	ACCGGT	2 cut(s)	199, 227
Asp700I	GAANNNNTTC	1 cut(s)	201
AspS9I	GGNCC	3 cut(s)	137, 225, 230
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	4 cut(s)	137, 143, 173, 242
AvaI	CYCGRG	1 cut(s)	258
AvaII	GGWCC	2 cut(s)	225, 230
BamHI	GGATCC	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	128, 286
BciT130I	CCWGG	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	4 cut(s)	28, 38, 86, 308
BisI	GCNGC	2 cut(s)	5, 57
BlsI	GCNGC	2 cut(s)	6, 58
Bme1390I	CCNGG	2 cut(s)	120, 234
Bme18I	GGWCC	2 cut(s)	225, 230
BmeT110I	CYCGRG	1 cut(s)	258
BmgT120I	GGNCC	3 cut(s)	137, 225, 230
BmiI	GGNNCC	2 cut(s)	149, 226
BmrFI	CCNGG	2 cut(s)	120, 234
BmrI	ACTGGG	1 cut(s)	347
BmuI	ACTGGG	1 cut(s)	347
BoxI	GACNNNNGTC	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	234
BsaI	GGTCTC	2 cut(s)	38, 308
BsaJI	CCNNGG	2 cut(s)	27, 118
BsaWI	WCCGGW	2 cut(s)	199, 227
Bse118I	RCCGGY	2 cut(s)	199, 227
Bse1I	ACTGG	3 cut(s)	149, 342, 380
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	2 cut(s)	27, 118
BseGI	GGATG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	3 cut(s)	149, 342, 380
BseRI	GAGGAG	2 cut(s)	52, 57
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	139
BshTI	ACCGGT	2 cut(s)	199, 227
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	4 cut(s)	140, 200, 228, 233
BslFI	GGGAC	1 cut(s)	238
BsmAI	GTCTC	4 cut(s)	28, 38, 86, 308
BsmBI	CGTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	139
Bso31I	GGTCTC	2 cut(s)	38, 308
BsoBI	CYCGRG	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	73, 147
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	149, 226
BspPI	GGATC	3 cut(s)	68, 142, 155
BspTNI	GGTCTC	2 cut(s)	38, 308
BsrFI	RCCGGY	2 cut(s)	199, 227
BsrI	ACTGG	3 cut(s)	149, 342, 380
BssAI	RCCGGY	2 cut(s)	199, 227
BssECI	CCNNGG	2 cut(s)	27, 118
BssMI	GATC	2 cut(s)	73, 147
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	9, 115
BstDEI	CTNAG	1 cut(s)	90
BstDSI	CCRYGG	1 cut(s)	27
BstEII	GGTNACC	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	244
BstKTI	GATC	2 cut(s)	76, 150
BstMAI	GTCTC	4 cut(s)	28, 38, 86, 308
BstMBI	GATC	2 cut(s)	73, 147
BstNI	CCWGG	1 cut(s)	120
BstPAI	GACNNNNGTC	1 cut(s)	168
BstPI	GGTNACC	1 cut(s)	161
BstSCI	CCNGG	2 cut(s)	118, 232
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	2 cut(s)	73, 147
BstYI	RGATCY	2 cut(s)	73, 147
BsuRI	GGCC	1 cut(s)	139
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	244
Cac8I	GCNNGC	2 cut(s)	9, 115
CciI	TCATGA	1 cut(s)	208
Cfr10I	RCCGGY	2 cut(s)	199, 227
Cfr13I	GGNCC	3 cut(s)	137, 225, 230
CpoI	CGGWCCG	1 cut(s)	230
CspAI	ACCGGT	2 cut(s)	199, 227
CspI	CGGWCCG	1 cut(s)	230
CviAII	CATG	2 cut(s)	95, 209
CviJI	RGCY	6 cut(s)	7, 11, 51, 56, 139, 318
CviKI_1	RGCY	6 cut(s)	7, 11, 51, 56, 139, 318
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	2 cut(s)	75, 149
DpnII	GATC	2 cut(s)	73, 147
Eco31I	GGTCTC	2 cut(s)	38, 308
Eco47I	GGWCC	2 cut(s)	225, 230
Eco88I	CYCGRG	1 cut(s)	258
Eco91I	GGTNACC	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	118
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	2 cut(s)	98, 212
FaiI	YATR	5 cut(s)	21, 96, 210, 321, 346
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	2 cut(s)	94, 208
Fnu4HI	GCNGC	2 cut(s)	5, 57
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	5, 57
GluI	GCNGC	2 cut(s)	5, 57
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	4 cut(s)	140, 200, 228, 233
Hin1II	CATG	2 cut(s)	98, 212
HinfI	GANTC	4 cut(s)	86, 99, 175, 261
HpaII	CCGG	4 cut(s)	140, 200, 228, 233
HphI	GGTGA	4 cut(s)	137, 143, 173, 242
Hpy188I	TCNGA	2 cut(s)	174, 266
Hpy188III	TCNNGA	5 cut(s)	71, 83, 151, 186, 209
Hpy99I	CGWCG	1 cut(s)	192
HpyAV	CCTTC	3 cut(s)	47, 122, 274
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	2 cut(s)	98, 212
Kzo9I	GATC	2 cut(s)	73, 147
Lsp1109I	GCAGC	1 cut(s)	16
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	2 cut(s)	75, 149
MboI	GATC	2 cut(s)	73, 147
MboII	GAAGA	1 cut(s)	302
MflI	RGATCY	2 cut(s)	73, 147
MluCI	AATT	1 cut(s)	180
MlyI	GAGTC	2 cut(s)	184, 270
MnlI	CCTC	9 cut(s)	54, 70, 73, 78, 87, 147, 205, 230, 258
MroXI	GAANNNNTTC	1 cut(s)	201
MspI	CCGG	4 cut(s)	140, 200, 228, 233
MspR9I	CCNGG	2 cut(s)	120, 234
MvaI	CCWGG	1 cut(s)	120
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	2 cut(s)	73, 147
NlaIII	CATG	2 cut(s)	98, 212
NlaIV	GGNNCC	2 cut(s)	149, 226
NmuCI	GTSAC	1 cut(s)	161
PaeR7I	CTCGAG	1 cut(s)	258
PagI	TCATGA	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	86, 99
PfoI	TCCNGGA	1 cut(s)	232
PinAI	ACCGGT	2 cut(s)	199, 227
PkrI	GCNGC	2 cut(s)	6, 58
PleI	GAGTC	2 cut(s)	183, 269
PpsI	GAGTC	2 cut(s)	183, 269
PshAI	GACNNNNGTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	118
PspEI	GGTNACC	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	149, 226
PspPI	GGNCC	3 cut(s)	137, 225, 230
PspXI	VCTCGAGB	1 cut(s)	258
PsuI	RGATCY	2 cut(s)	73, 147
Rsr2I	CGGWCCG	1 cut(s)	230
RsrII	CGGWCCG	1 cut(s)	230
SatI	GCNGC	2 cut(s)	5, 57
Sau3AI	GATC	2 cut(s)	73, 147
Sau96I	GGNCC	3 cut(s)	137, 225, 230
SchI	GAGTC	2 cut(s)	184, 270
ScrFI	CCNGG	2 cut(s)	120, 234
SetI	ASST	7 cut(s)	46, 133, 158, 163, 220, 285, 320
Sfr274I	CTCGAG	1 cut(s)	258
SinI	GGWCC	2 cut(s)	225, 230
SlaI	CTCGAG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
Sse9I	AATT	1 cut(s)	180
SsiI	CCGC	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	118, 232
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	4 cut(s)	84, 102, 187, 259
TasI	AATT	1 cut(s)	180
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	2 cut(s)	86, 99
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	1 cut(s)	296
VpaK11BI	GGWCC	2 cut(s)	225, 230
XapI	RAATTY	1 cut(s)	180
XhoI	CTCGAG	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.