Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009977

Physical Location & Seq

Genomic Coordinates Forward (+)

16933699 .. 16934568

Gene Structure 870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G44830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGTGAAAACACTTCAAAAGACACCAAAGAGAATGTCATCTCCATCATCATCATCTTCATCATCCTCATCAACATCATCATCATCCATAAGGATGAAGAAGTACAAGGGAGTGAGAATGAGAAGTTGGGGTTCATGGGTTTCAGAGATCAGAGCTCCTAATCAAAAGACAAGGATCTGGCTTGGTTCTTACTCAACTGCTGAAGCCGCGGCTAGAGCCTACGACGCAGCACTCCTATGTCTTAAAGGATCCTCAGCTAATAATCTCAACTTCCCAGAGATCTCAACTTCTCTCTACCATATTATCAACAATGGTGATAACAACAATGACATGTCCCCTAAGTCTATACAAAGAGTAGCAGCTGCAGCTGCTGCTGCCAACACAGATCCTTCCTCATCATCAGTCTCTACTTCATCTCCATTGCTTTCCTCTCCATCTGAAGATCTCTATGATGTTGTCTCCATGTCACAGTATGACCAACAAGTCTCCTTGTCTGAATCATCATCATGGTACAACTGCTTTGATGGTGATGATCAGTTCATGTTCATTAATGGAGTCTCCGCGCCGTATTTGACAACATCACTTTCTGATGATTTCTTTGAGGAAGGAGATATCAGATTATGGAACTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002376 GO:0002682 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009607 GO:0009611 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009861 GO:0009863 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010675 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032870 GO:0032881 GO:0032885 GO:0033554 GO:0034605 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071497 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1900030 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

211

Amino Acids

23.04

Weight (kDa)

5.41

Isoelectric Point (pI)

66.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	34 - 83	2.5e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21910 AT1G44830 AT1G77640
fragaria_vesca	FvH4_2g26630
malus_domestica	MD08G1166100.v1.1 MD15G1352400.v1.1
prunus_persica	Prupe.1G500900_v2.0.a1
pyrus_communis	pycom08g14230 pycom15g31590
rosa_chinensis	RchiOBHm_Chr6g0295481
rosa_laevigata	RLG00000011797
rosa_multiflora	Rmu_co8378119.1_g000001 Rmu_sc0005712.1_g000029 Rmu_sc0030312.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172440
rosa_rugosa	Rorug06G0251300
rosa_samantha	Rh6AG364500 Rh6BG372800 Rh6CG379100 Rh6DG365500
rosa_wichuraiana	Rw6G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	482
AccII	CGCG	2 cut(s)	209, 563
AciI	CCGC	3 cut(s)	207, 209, 561
AclWI	GGATC	4 cut(s)	182, 243, 256, 380
AcuI	CTGAAG	2 cut(s)	222, 459
AfaI	GTAC	2 cut(s)	104, 512
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	1 cut(s)	17
AjuI	GAANNNNNNNTTGG	2 cut(s)	109, 141
AluBI	AGCT	4 cut(s)	155, 257, 362, 368
AluI	AGCT	4 cut(s)	155, 257, 362, 368
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	4 cut(s)	409, 463, 490, 562
AlwI	GGATC	4 cut(s)	182, 243, 256, 380
AlwNI	CAGNNNCTG	1 cut(s)	371
ApeKI	GCWGC	7 cut(s)	227, 359, 362, 365, 368, 371, 374
ArsI	GACNNNNNNTTYG	2 cut(s)	20, 52
AseI	ATTAAT	1 cut(s)	549
AspLEI	GCGC	1 cut(s)	565
AsuHPI	GGTGA	3 cut(s)	16, 326, 539
BamHI	GGATCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	157
BbvCI	CCTCAGC	1 cut(s)	253
BbvI	GCAGC	7 cut(s)	239, 349, 355, 358, 361, 371, 377
BccI	CCATC	3 cut(s)	52, 442, 518
BceAI	ACGGC	1 cut(s)	550
BclI	TGATCA	1 cut(s)	532
BcoDI	GTCTC	4 cut(s)	409, 463, 490, 562
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	363
BglII	AGATCT	2 cut(s)	279, 442
BisI	GCNGC	9 cut(s)	207, 210, 228, 360, 363, 366, 369, 372, 375
BlsI	GCNGC	9 cut(s)	208, 211, 229, 361, 364, 367, 370, 373, 376
BmiI	GGNNCC	1 cut(s)	250
Bpu10I	CCTNAGC	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	207
BsaXI	ACNNNNNCTCC	2 cut(s)	400, 430
Bse3DI	GCAATG	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	3 cut(s)	62, 83, 99
BseMI	GCAATG	1 cut(s)	419
BseMII	CTCAG	1 cut(s)	267
BseXI	GCAGC	7 cut(s)	239, 349, 355, 358, 361, 371, 377
Bsh1236I	CGCG	2 cut(s)	209, 563
BsiHKAI	GWGCWC	1 cut(s)	157
BslFI	GGGAC	1 cut(s)	319
BsmAI	GTCTC	4 cut(s)	409, 463, 490, 562
BsmFI	GGGAC	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	7 cut(s)	147, 174, 248, 279, 385, 442, 532
BspACI	CCGC	3 cut(s)	207, 209, 561
BspCNI	CTCAG	1 cut(s)	266
BspFNI	CGCG	2 cut(s)	209, 563
BspLI	GGNNCC	1 cut(s)	250
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	4 cut(s)	182, 243, 256, 380
BsrDI	GCAATG	1 cut(s)	419
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	7 cut(s)	147, 174, 248, 279, 385, 442, 532
Bst4CI	ACNGT	1 cut(s)	471
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstDEI	CTNAG	2 cut(s)	253, 339
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	3 cut(s)	62, 83, 99
BstFNI	CGCG	2 cut(s)	209, 563
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	7 cut(s)	150, 177, 251, 282, 388, 445, 535
BstMAI	GTCTC	4 cut(s)	409, 463, 490, 562
BstMBI	GATC	7 cut(s)	147, 174, 248, 279, 385, 442, 532
BstMWI	GCNNNNNNNGC	7 cut(s)	206, 215, 224, 365, 368, 371, 374
BstNSI	RCATGY	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	363
BstUI	CGCG	2 cut(s)	209, 563
BstV1I	GCAGC	7 cut(s)	239, 349, 355, 358, 361, 371, 377
BstX2I	RGATCY	5 cut(s)	174, 248, 279, 385, 442
BstYI	RGATCY	5 cut(s)	174, 248, 279, 385, 442
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	3 cut(s)	62, 83, 99
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	1 cut(s)	565
Cfr42I	CCGCGG	1 cut(s)	210
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	103, 511
CviAII	CATG	5 cut(s)	135, 331, 463, 507, 541
CviJI	RGCY	8 cut(s)	155, 181, 206, 212, 218, 257, 362, 368
CviKI_1	RGCY	8 cut(s)	155, 181, 206, 212, 218, 257, 362, 368
CviQI	GTAC	2 cut(s)	103, 511
DdeI	CTNAG	2 cut(s)	253, 339
DpnI	GATC	7 cut(s)	149, 176, 250, 281, 387, 444, 534
DpnII	GATC	7 cut(s)	147, 174, 248, 279, 385, 442, 532
DrdI	GACNNNNNNGTC	1 cut(s)	482
DseDI	GACNNNNNNGTC	1 cut(s)	482
Ecl136II	GAGCTC	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	157
Eco32I	GATATC	1 cut(s)	613
Eco53kI	GAGCTC	1 cut(s)	155
Eco57I	CTGAAG	2 cut(s)	222, 459
EcoICRI	GAGCTC	1 cut(s)	155
EcoRV	GATATC	1 cut(s)	613
EcoT38I	GRGCYC	1 cut(s)	157
FaeI	CATG	5 cut(s)	138, 334, 466, 510, 544
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	5 cut(s)	134, 330, 462, 506, 540
FbaI	TGATCA	1 cut(s)	532
Fnu4HI	GCNGC	9 cut(s)	207, 210, 228, 360, 363, 366, 369, 372, 375
FokI	GGATG	3 cut(s)	49, 70, 106
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	9 cut(s)	207, 210, 228, 360, 363, 366, 369, 372, 375
FspBI	CTAG	1 cut(s)	213
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	9 cut(s)	207, 210, 228, 360, 363, 366, 369, 372, 375
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	5 cut(s)	138, 334, 466, 510, 544
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HinfI	GANTC	2 cut(s)	497, 555
HphI	GGTGA	3 cut(s)	16, 326, 539
Hpy188I	TCNGA	6 cut(s)	145, 152, 439, 496, 589, 617
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	399, 599
HpyCH4III	ACNGT	1 cut(s)	471
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	7 cut(s)	206, 215, 224, 365, 368, 371, 374
HpyF3I	CTNAG	2 cut(s)	253, 339
Hsp92II	CATG	5 cut(s)	138, 334, 466, 510, 544
HspAI	GCGC	1 cut(s)	563
Ksp22I	TGATCA	1 cut(s)	532
KspI	CCGCGG	1 cut(s)	210
Kzo9I	GATC	7 cut(s)	147, 174, 248, 279, 385, 442, 532
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	2 cut(s)	163, 288
Lsp1109I	GCAGC	7 cut(s)	239, 349, 355, 358, 361, 371, 377
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	465
MalI	GATC	7 cut(s)	149, 176, 250, 281, 387, 444, 534
MboI	GATC	7 cut(s)	147, 174, 248, 279, 385, 442, 532
MboII	GAAGA	3 cut(s)	48, 109, 452
MflI	RGATCY	5 cut(s)	174, 248, 279, 385, 442
MhlI	GDGCHC	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	564
MnlI	CCTC	5 cut(s)	76, 262, 403, 439, 595
MseI	TTAA	2 cut(s)	243, 549
MslI	CAYNNNNRTG	3 cut(s)	92, 235, 505
MspA1I	CMGCKG	3 cut(s)	209, 362, 368
MvnI	CGCG	2 cut(s)	209, 563
MwoI	GCNNNNNNNGC	7 cut(s)	206, 215, 224, 365, 368, 371, 374
NdeII	GATC	7 cut(s)	147, 174, 248, 279, 385, 442, 532
NlaIII	CATG	5 cut(s)	138, 334, 466, 510, 544
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	465
NspI	RCATGY	1 cut(s)	334
PciI	ACATGT	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	497
PkrI	GCNGC	9 cut(s)	208, 211, 229, 361, 364, 367, 370, 373, 376
PleI	GAGTC	1 cut(s)	563
PpsI	GAGTC	1 cut(s)	563
PscI	ACATGT	1 cut(s)	330
PshBI	ATTAAT	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	250
PstI	CTGCAG	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	5 cut(s)	174, 248, 279, 385, 442
PvuII	CAGCTG	2 cut(s)	362, 368
RsaI	GTAC	2 cut(s)	104, 512
RsaNI	GTAC	2 cut(s)	103, 511
RseI	CAYNNNNRTG	3 cut(s)	92, 235, 505
SacI	GAGCTC	1 cut(s)	157
SacII	CCGCGG	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	243, 549
SatI	GCNGC	9 cut(s)	207, 210, 228, 360, 363, 366, 369, 372, 375
Sau3AI	GATC	7 cut(s)	147, 174, 248, 279, 385, 442, 532
SchI	GAGTC	1 cut(s)	564
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	4 cut(s)	157, 259, 364, 370
SfcI	CTRYAG	1 cut(s)	363
Sfr303I	CCGCGG	1 cut(s)	210
SgrBI	CCGCGG	1 cut(s)	210
SmiMI	CAYNNNNRTG	3 cut(s)	92, 235, 505
SsiI	CCGC	3 cut(s)	207, 209, 561
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	471
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	2 cut(s)	209, 212
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	2 cut(s)	243, 549
Tru9I	TTAA	2 cut(s)	243, 549
TseFI	GTSAC	1 cut(s)	465
TseI	GCWGC	7 cut(s)	227, 359, 362, 365, 368, 371, 374
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	6 cut(s)	48, 110, 123, 402, 529, 535
VspI	ATTAAT	1 cut(s)	549
XceI	RCATGY	1 cut(s)	334
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.