Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009977

Physical Location & Seq

Genomic Coordinates Forward (+)

19713833 .. 19714552

Gene Structure 720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1166100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGTGAAGACAGATCAGAGGATTATTCAGCTGCCTTCAGAGATGACATCATCGAAAACGACATCGAAGTCTCCACCTTCTTCTTCTTCTACCTCAGCATGCAAGAAGAAGAAGTTTAAGGGAGTGAGGATGAGGAGCTGGGGCTCTTGGGTTACAGAGATTAGAGCCCCAAACCAAAAAACAAGAATATGGTTAGGTTCATATTCGACAGCTGAGGCTGCAGCAAGAGCCTACGATGCTGCCCTACTGTGCCTCAAGGGCTCTTCAGCCAACCTCAACTTCCCCACCACTGCCTCCTCACATTTTATCCCCCAGGAAATGACCGTCATGTCCCCCAAGTCCATCCAGAGAGTGGCTGCAGCCGCTGCCAATAATAATGCCGCTACCACCACCGCAAACATTGCCTGTCCACCATCACCCCCTCCTCAATCTTCTTCTTCGTCTTTGGTCTCGTCTCCGTCTCTCGTCTCGTCGCCATCAATGTCGTCCTCGCCGTCCATTAACCTCATCGATGATGACATGTCATCGCTAATGGGGTCATTTGGGGGGTCCTACACTCCCACTTACTATGATCAAGCAAATGATCAATTACCAATGTCTAGCATGGATTCGTGGAACAACTTTGACCAAATGTTCGATGGCGCATTGTTGGATCCACAGCCACCTATGATGTACGACTTTTATGAGGAAAGTGACATTCGCTTGTGGAGCTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

240

Amino Acids

25.9

Weight (kDa)

6.57

Isoelectric Point (pI)

75.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	38 - 87	4.2e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21910 AT1G44830 AT1G77640
fragaria_vesca	FvH4_2g26630
malus_domestica	MD08G1166100.v1.1 MD15G1352400.v1.1
prunus_persica	Prupe.1G500900_v2.0.a1
pyrus_communis	pycom08g14230 pycom15g31590
rosa_chinensis	RchiOBHm_Chr6g0295481
rosa_laevigata	RLG00000011797
rosa_multiflora	Rmu_co8378119.1_g000001 Rmu_sc0005712.1_g000029 Rmu_sc0030312.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172440
rosa_rugosa	Rorug06G0251300
rosa_samantha	Rh6AG364500 Rh6BG372800 Rh6CG379100 Rh6DG365500
rosa_wichuraiana	Rw6G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	67, 328
AccB7I	CCANNNNNTGG	1 cut(s)	352
AciI	CCGC	3 cut(s)	363, 381, 393
AclWI	GGATC	2 cut(s)	647, 660
AcuI	CTGAAG	2 cut(s)	21, 249
AfaI	GTAC	1 cut(s)	674
AfiI	CCNNNNNNNGG	1 cut(s)	352
AflIII	ACRYGT	1 cut(s)	519
AjnI	CCWGG	1 cut(s)	312
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	4 cut(s)	31, 138, 212, 711
AluI	AGCT	4 cut(s)	31, 138, 212, 711
Alw26I	GTCTC	5 cut(s)	75, 454, 459, 465, 472
AlwI	GGATC	2 cut(s)	647, 660
AlwNI	CAGNNNCTG	1 cut(s)	365
ApeKI	GCWGC	7 cut(s)	31, 218, 221, 239, 356, 359, 365
ArsI	GACNNNNNNTTYG	2 cut(s)	617, 649
AspLEI	GCGC	1 cut(s)	644
AspS9I	GGNCC	1 cut(s)	549
AsuHPI	GGTGA	2 cut(s)	16, 408
AvaII	GGWCC	1 cut(s)	549
BamHI	GGATCC	1 cut(s)	652
BanII	GRGCYC	3 cut(s)	146, 169, 263
BbsI	GAAGAC	1 cut(s)	14
BbvCI	CCTCAGC	2 cut(s)	94, 213
BbvI	GCAGC	7 cut(s)	18, 205, 226, 233, 343, 352, 371
BccI	CCATC	4 cut(s)	350, 421, 484, 632
BceAI	ACGGC	1 cut(s)	478
BciT130I	CCWGG	1 cut(s)	314
BclI	TGATCA	2 cut(s)	571, 583
BcoDI	GTCTC	5 cut(s)	75, 454, 459, 465, 472
BfaI	CTAG	1 cut(s)	600
BfmI	CTRYAG	2 cut(s)	219, 357
BglI	GCCNNNNNGGC	1 cut(s)	258
BisI	GCNGC	9 cut(s)	32, 219, 222, 240, 357, 360, 363, 366, 381
BlsI	GCNGC	9 cut(s)	33, 220, 223, 241, 358, 361, 364, 367, 382
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	1 cut(s)	549
BmgT120I	GGNCC	1 cut(s)	549
BmiI	GGNNCC	2 cut(s)	550, 654
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	14
Bpu10I	CCTNAGC	2 cut(s)	94, 213
BpuEI	CTTGAG	1 cut(s)	239
Bsa29I	ATCGAT	1 cut(s)	510
BsaI	GGTCTC	1 cut(s)	454
BsaJI	CCNNGG	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	314
BseCI	ATCGAT	1 cut(s)	510
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	2 cut(s)	135, 342
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	2 cut(s)	108, 204
BseRI	GAGGAG	3 cut(s)	148, 286, 414
BseXI	GCAGC	7 cut(s)	18, 205, 226, 233, 343, 352, 371
BseYI	CCCAGC	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	510
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	5 cut(s)	75, 454, 459, 465, 472
BsmBI	CGTCTC	3 cut(s)	459, 465, 472
BsmFI	GGGAC	1 cut(s)	316
Bso31I	GGTCTC	1 cut(s)	454
Bsp1286I	GDGCHC	3 cut(s)	146, 169, 263
Bsp143I	GATC	4 cut(s)	13, 571, 583, 652
BspACI	CCGC	3 cut(s)	363, 381, 393
BspCNI	CTCAG	2 cut(s)	107, 205
BspDI	ATCGAT	1 cut(s)	510
BspLI	GGNNCC	2 cut(s)	550, 654
BspMAI	CTGCAG	2 cut(s)	223, 361
BspPI	GGATC	2 cut(s)	647, 660
BspQI	GCTCTTC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	454
BsrDI	GCAATG	1 cut(s)	399
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	4 cut(s)	13, 571, 583, 652
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	2 cut(s)	249, 325
Bst6I	CTCTTC	1 cut(s)	268
BstAPI	GCANNNNNTGC	2 cut(s)	365, 401
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	94, 213
BstF5I	GGATG	2 cut(s)	135, 342
BstHHI	GCGC	1 cut(s)	644
BstKTI	GATC	4 cut(s)	16, 574, 586, 655
BstMAI	GTCTC	5 cut(s)	75, 454, 459, 465, 472
BstMBI	GATC	4 cut(s)	13, 571, 583, 652
BstMWI	GCNNNNNNNGC	8 cut(s)	218, 227, 236, 258, 362, 365, 401, 708
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	2 cut(s)	102, 523
BstSCI	CCNGG	1 cut(s)	312
BstSFI	CTRYAG	2 cut(s)	219, 357
BstV1I	GCAGC	7 cut(s)	18, 205, 226, 233, 343, 352, 371
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
Bsu15I	ATCGAT	1 cut(s)	510
BsuTUI	ATCGAT	1 cut(s)	510
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	2 cut(s)	135, 342
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	100
CaiI	CAGNNNCTG	1 cut(s)	365
CfoI	GCGC	1 cut(s)	644
Cfr13I	GGNCC	1 cut(s)	549
ClaI	ATCGAT	1 cut(s)	510
Csp6I	GTAC	1 cut(s)	673
CviAII	CATG	4 cut(s)	99, 328, 520, 604
CviQI	GTAC	1 cut(s)	673
DdeI	CTNAG	2 cut(s)	94, 213
DpnI	GATC	4 cut(s)	15, 573, 585, 654
DpnII	GATC	4 cut(s)	13, 571, 583, 652
DrdI	GACNNNNNNGTC	2 cut(s)	67, 328
DseDI	GACNNNNNNGTC	2 cut(s)	67, 328
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Eco24I	GRGCYC	3 cut(s)	146, 169, 263
Eco31I	GGTCTC	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	549
Eco57I	CTGAAG	2 cut(s)	21, 249
EcoO109I	RGGNCCY	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	312
EcoT38I	GRGCYC	3 cut(s)	146, 169, 263
Esp3I	CGTCTC	3 cut(s)	459, 465, 472
FaeI	CATG	4 cut(s)	102, 331, 523, 607
FaiI	YATR	9 cut(s)	100, 190, 202, 329, 521, 570, 605, 668, 684
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	4 cut(s)	98, 327, 519, 603
FbaI	TGATCA	2 cut(s)	571, 583
Fnu4HI	GCNGC	9 cut(s)	32, 219, 222, 240, 357, 360, 363, 366, 381
FokI	GGATG	2 cut(s)	142, 329
FriOI	GRGCYC	3 cut(s)	146, 169, 263
Fsp4HI	GCNGC	9 cut(s)	32, 219, 222, 240, 357, 360, 363, 366, 381
FspBI	CTAG	1 cut(s)	600
GlaI	GCGC	1 cut(s)	643
GluI	GCNGC	9 cut(s)	32, 219, 222, 240, 357, 360, 363, 366, 381
GsaI	CCCAGC	1 cut(s)	142
HhaI	GCGC	1 cut(s)	644
Hin1II	CATG	4 cut(s)	102, 331, 523, 607
Hin6I	GCGC	1 cut(s)	642
HinP1I	GCGC	1 cut(s)	642
HinfI	GANTC	1 cut(s)	608
HphI	GGTGA	2 cut(s)	16, 408
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	2 cut(s)	18, 40
Hpy188III	TCNNGA	1 cut(s)	346
Hpy8I	GTNNAC	1 cut(s)	410
Hpy99I	CGWCG	1 cut(s)	475
HpyAV	CCTTC	2 cut(s)	45, 87
HpyCH4III	ACNGT	2 cut(s)	249, 325
HpyCH4V	TGCA	3 cut(s)	102, 221, 359
HpyF10VI	GCNNNNNNNGC	8 cut(s)	218, 227, 236, 258, 362, 365, 401, 708
HpyF3I	CTNAG	2 cut(s)	94, 213
Hsp92II	CATG	4 cut(s)	102, 331, 523, 607
HspAI	GCGC	1 cut(s)	642
Ksp22I	TGATCA	2 cut(s)	571, 583
Kzo9I	GATC	4 cut(s)	13, 571, 583, 652
LguI	GCTCTTC	1 cut(s)	268
LmnI	GCTCC	2 cut(s)	135, 708
LpnPI	CCDG	5 cut(s)	124, 299, 326, 359, 418
Lsp1109I	GCAGC	7 cut(s)	18, 205, 226, 233, 343, 352, 371
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	600
MaeIII	GTNAC	2 cut(s)	151, 692
MalI	GATC	4 cut(s)	15, 573, 585, 654
MboI	GATC	4 cut(s)	13, 571, 583, 652
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	3 cut(s)	146, 169, 263
MluCI	AATT	1 cut(s)	587
MmeI	TCCRAC	1 cut(s)	630
MseI	TTAA	2 cut(s)	117, 501
MspA1I	CMGCKG	3 cut(s)	31, 212, 365
MspR9I	CCNGG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	8 cut(s)	218, 227, 236, 258, 362, 365, 401, 708
NdeII	GATC	4 cut(s)	13, 571, 583, 652
NlaIII	CATG	4 cut(s)	102, 331, 523, 607
NlaIV	GGNNCC	2 cut(s)	550, 654
NmuCI	GTSAC	1 cut(s)	692
NspI	RCATGY	2 cut(s)	102, 523
PaeI	GCATGC	1 cut(s)	102
PciI	ACATGT	1 cut(s)	519
PciSI	GCTCTTC	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	608
PflMI	CCANNNNNTGG	1 cut(s)	352
PkrI	GCNGC	9 cut(s)	33, 220, 223, 241, 358, 361, 364, 367, 382
PpuMI	RGGWCCY	1 cut(s)	549
PscI	ACATGT	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	312
PspFI	CCCAGC	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	550, 654
PspPI	GGNCC	1 cut(s)	549
PspPPI	RGGWCCY	1 cut(s)	549
PstI	CTGCAG	2 cut(s)	223, 361
PstNI	CAGNNNCTG	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	652
PvuII	CAGCTG	2 cut(s)	31, 212
RsaI	GTAC	1 cut(s)	674
RsaNI	GTAC	1 cut(s)	673
SapI	GCTCTTC	1 cut(s)	268
SaqAI	TTAA	2 cut(s)	117, 501
SatI	GCNGC	9 cut(s)	32, 219, 222, 240, 357, 360, 363, 366, 381
Sau3AI	GATC	4 cut(s)	13, 571, 583, 652
Sau96I	GGNCC	1 cut(s)	549
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	3 cut(s)	146, 169, 263
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	2 cut(s)	219, 357
SinI	GGWCC	1 cut(s)	549
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SphI	GCATGC	1 cut(s)	102
Sse9I	AATT	1 cut(s)	587
SsiI	CCGC	3 cut(s)	363, 381, 393
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	249, 325
TaqI	TCGA	5 cut(s)	53, 65, 206, 510, 636
TasI	AATT	1 cut(s)	587
TauI	GCSGC	2 cut(s)	365, 383
TfiI	GAWTC	1 cut(s)	608
Tru1I	TTAA	2 cut(s)	117, 501
Tru9I	TTAA	2 cut(s)	117, 501
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	692
TseI	GCWGC	7 cut(s)	31, 218, 221, 239, 356, 359, 365
Tsp45I	GTSAC	1 cut(s)	692
TspDTI	ATGAA	1 cut(s)	189
TspGWI	ACGGA	1 cut(s)	447
TspRI	CASTG	1 cut(s)	295
Van91I	CCANNNNNTGG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	549
XceI	RCATGY	2 cut(s)	102, 523
XcmI	CCANNNNNNNNNTGG	2 cut(s)	349, 635
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.