Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009977

Physical Location & Seq

Genomic Coordinates Forward (+)

12750192 .. 12752194

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011797

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGTGAAGACAGAGCAGAGGATTCAGCTGGCTTCTGAGACCTCATTGAAACCATTAGTGCCTTCGTCGAAAACGACATCGAGGGACAAGAAGAAGAAGTACAAGGGTGTGAGGATGAGGAGCTGGGGCTCATGGGTTTCGGAGATTAGAGCCCCAAACCAGAAGACAAGAATATGGCTAGGCTCATACTCAACAGCGGAAGCAGCAGCCAGAGCCTATGATGCCGCTCTCTTGTGCCTCAAAGGCTCCTCAGCCAATCTCAACTTCCCAATCAGTGCCTCATCACAGTTTGTTCCTCATGAAAATACCATCATGTCCCCTAAGTCCATTCAGAGAGTAGCTGCAGCTGCTGCTAATAGCTTCAATCATGAAAATGCCACCACCATCACAGCCTCATCTCCACCATCACCGCCTCCTAATGATCTCTCTTCTTCATCTTCATCACTGGTCTCATCCCCATCAATGTCATCATCCTCACCATCGATTAATCTCGTTGACGATGACATGTCCTCGCTGATGGGCTCATTCGGGTGCTATAATCCTGCTACTTATGATCATAATCCACAGGCAGACTATCATGTACCAATGTGCACCCTGGAATCATGGAACCACTTTGATGATTTATTCACTGGTGCCTTGCTGGATCCACCTATGAATTATGACTTCTATGAAGAAAGCGATATTCGCTTGAAATTGCTTGAAGATATTACTGACAGTGACCCAAATTCTTTTAAATTCCATATGATAGGTGAAGAAATTTACATTGAGATGAAGAGACATCTTTTTGGACTCTATCTCATTAGAATCAATGAATTTGACAGTTTGGAGCAAGCATTTGAATCTGGTCAAATGTTTGCAGAACTTGTTCAAGCCAAGAATGCACATGATCTGTCCTCAAAGGAGCAGTGGCTGAGAGGATGGCATGGGGTCCCATTCTCATTTGTTTCCCTTTCCCTCACAGTTTACACTGTATTTGGTCTTCTTCACCCATCTTCCATCTTCTCCATGGGCCATTCTCAGGAAACCTACGTGTTTTGGTTAAGGACCTCCTTTATTGAGAAATATGGGCAGTTTGGGCCCTCAGAAGAGCCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

366

Amino Acids

40.82

Weight (kDa)

5.57

Isoelectric Point (pI)

57.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	33 - 82	6e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21910 AT1G44830 AT1G77640
fragaria_vesca	FvH4_2g26630
malus_domestica	MD08G1166100.v1.1 MD15G1352400.v1.1
prunus_persica	Prupe.1G500900_v2.0.a1
pyrus_communis	pycom08g14230 pycom15g31590
rosa_chinensis	RchiOBHm_Chr6g0295481
rosa_laevigata	RLG00000011797
rosa_multiflora	Rmu_co8378119.1_g000001 Rmu_sc0005712.1_g000029 Rmu_sc0030312.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172440
rosa_rugosa	Rorug06G0251300
rosa_samantha	Rh6AG364500 Rh6BG372800 Rh6CG379100 Rh6DG365500
rosa_wichuraiana	Rw6G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	632
AccBSI	CCGCTC	1 cut(s)	227
AciI	CCGC	3 cut(s)	197, 225, 410
AclWI	GGATC	2 cut(s)	638, 651
AcsI	RAATTY	4 cut(s)	724, 734, 756, 812
AfaI	GTAC	2 cut(s)	101, 582
AfiI	CCNNNNNNNGG	1 cut(s)	1018
AflIII	ACRYGT	2 cut(s)	504, 1029
AgsI	TTSAA	6 cut(s)	49, 364, 691, 701, 839, 869
AjnI	CCWGG	1 cut(s)	594
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AluBI	AGCT	5 cut(s)	28, 123, 341, 347, 360
AluI	AGCT	5 cut(s)	28, 123, 341, 347, 360
Alw21I	GWGCWC	1 cut(s)	593
Alw26I	GTCTC	3 cut(s)	32, 454, 769
Alw44I	GTGCAC	1 cut(s)	589
AlwI	GGATC	2 cut(s)	638, 651
AlwNI	CAGNNNCTG	2 cut(s)	350, 910
AoxI	GGCC	2 cut(s)	1009, 1076
ApaI	GGGCCC	1 cut(s)	1080
ApaLI	GTGCAC	1 cut(s)	589
ApeKI	GCWGC	6 cut(s)	203, 206, 341, 344, 347, 350
ApoI	RAATTY	4 cut(s)	724, 734, 756, 812
AseI	ATTAAT	1 cut(s)	486
Asp700I	GAANNNNTTC	1 cut(s)	864
AspS9I	GGNCC	5 cut(s)	928, 1009, 1044, 1076, 1077
AsuHPI	GGTGA	5 cut(s)	16, 399, 468, 761, 977
AvaII	GGWCC	2 cut(s)	928, 1044
BaeGI	GKGCMC	2 cut(s)	593, 1080
BamHI	GGATCC	1 cut(s)	643
BanI	GGYRCC	1 cut(s)	632
BanII	GRGCYC	4 cut(s)	131, 154, 524, 1080
BarI	GAAGNNNNNNTAC	4 cut(s)	83, 115, 963, 995
BbsI	GAAGAC	3 cut(s)	14, 170, 971
Bbv12I	GWGCWC	1 cut(s)	593
BbvCI	CCTCAGC	1 cut(s)	250
BbvI	GCAGC	6 cut(s)	215, 218, 328, 334, 337, 356
BccI	CCATC	9 cut(s)	317, 392, 412, 466, 487, 511, 912, 997, 1004
BciT130I	CCWGG	1 cut(s)	596
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	3 cut(s)	32, 454, 769
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	342
BglI	GCCNNNNNGGC	1 cut(s)	243
BisI	GCNGC	7 cut(s)	204, 207, 225, 342, 345, 348, 351
BlsI	GCNGC	7 cut(s)	205, 208, 226, 343, 346, 349, 352
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	2 cut(s)	928, 1044
BmgT120I	GGNCC	5 cut(s)	928, 1009, 1044, 1076, 1077
BmiI	GGNNCC	7 cut(s)	247, 608, 634, 645, 929, 930, 1078
BmrFI	CCNGG	1 cut(s)	596
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	3 cut(s)	14, 170, 971
Bpu10I	CCTNAGC	1 cut(s)	250
Bsa29I	ATCGAT	1 cut(s)	482
BsaAI	YACGTR	1 cut(s)	1030
BsaBI	GATNNNNATC	1 cut(s)	558
BsaI	GGTCTC	2 cut(s)	32, 454
BsaJI	CCNNGG	2 cut(s)	594, 1005
Bsc4I	CCNNNNNNNGG	1 cut(s)	1018
Bse1I	ACTGG	2 cut(s)	450, 634
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	596
BseCI	ATCGAT	1 cut(s)	482
BseDI	CCNNGG	2 cut(s)	594, 1005
BseGI	GGATG	4 cut(s)	120, 452, 470, 923
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	1 cut(s)	1018
BseMII	CTCAG	5 cut(s)	27, 264, 902, 1031, 1095
BseNI	ACTGG	2 cut(s)	450, 634
BseRI	GAGGAG	2 cut(s)	133, 238
BseSI	GKGCMC	2 cut(s)	593, 1080
BseXI	GCAGC	6 cut(s)	215, 218, 328, 334, 337, 356
BseYI	CCCAGC	1 cut(s)	123
BshFI	GGCC	2 cut(s)	1011, 1078
BshNI	GGYRCC	1 cut(s)	632
BshVI	ATCGAT	1 cut(s)	482
BsiHKAI	GWGCWC	1 cut(s)	593
BslFI	GGGAC	3 cut(s)	98, 301, 914
BslI	CCNNNNNNNGG	1 cut(s)	1018
BsmAI	GTCTC	3 cut(s)	32, 454, 769
BsmFI	GGGAC	3 cut(s)	98, 301, 914
BsmI	GAATGC	1 cut(s)	883
BsnI	GGCC	2 cut(s)	1011, 1078
Bso31I	GGTCTC	2 cut(s)	32, 454
Bsp120I	GGGCCC	1 cut(s)	1076
Bsp1286I	GDGCHC	5 cut(s)	131, 154, 524, 593, 1080
Bsp143I	GATC	4 cut(s)	421, 553, 643, 886
Bsp19I	CCATGG	1 cut(s)	1005
BspACI	CCGC	3 cut(s)	197, 225, 410
BspANI	GGCC	2 cut(s)	1011, 1078
BspCNI	CTCAG	5 cut(s)	28, 263, 903, 1030, 1094
BspDI	ATCGAT	1 cut(s)	482
BspHI	TCATGA	2 cut(s)	298, 367
BspLI	GGNNCC	7 cut(s)	247, 608, 634, 645, 929, 930, 1078
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	2 cut(s)	638, 651
BspQI	GCTCTTC	1 cut(s)	1080
BspT107I	GGYRCC	1 cut(s)	632
BspTNI	GGTCTC	2 cut(s)	32, 454
BsrBI	CCGCTC	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	450, 634
BssECI	CCNNGG	2 cut(s)	594, 1005
BssMI	GATC	4 cut(s)	421, 553, 643, 886
BssT1I	CCWWGG	1 cut(s)	1005
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	5 cut(s)	288, 716, 821, 961, 970
Bst6I	CTCTTC	3 cut(s)	433, 767, 1080
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstBAI	YACGTR	1 cut(s)	1030
BstC8I	GCNNGC	2 cut(s)	30, 831
BstDEI	CTNAG	6 cut(s)	36, 250, 321, 911, 1017, 1081
BstDSI	CCRYGG	1 cut(s)	1005
BstF5I	GGATG	4 cut(s)	120, 452, 470, 923
BstKTI	GATC	4 cut(s)	424, 556, 646, 889
BstMAI	GTCTC	3 cut(s)	32, 454, 769
BstMBI	GATC	4 cut(s)	421, 553, 643, 886
BstMWI	GCNNNNNNNGC	9 cut(s)	203, 212, 221, 243, 347, 350, 684, 878, 1075
BstNI	CCWGG	1 cut(s)	596
BstNSI	RCATGY	1 cut(s)	508
BstSCI	CCNGG	1 cut(s)	594
BstSFI	CTRYAG	1 cut(s)	342
BstSLI	GKGCMC	2 cut(s)	593, 1080
BstV1I	GCAGC	6 cut(s)	215, 218, 328, 334, 337, 356
BstV2I	GAAGAC	3 cut(s)	14, 170, 971
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
Bsu15I	ATCGAT	1 cut(s)	482
BsuRI	GGCC	2 cut(s)	1011, 1078
BsuTUI	ATCGAT	1 cut(s)	482
BtgI	CCRYGG	1 cut(s)	1005
BtsCI	GGATG	4 cut(s)	120, 452, 470, 923
BtsI	GCAGTG	1 cut(s)	911
BtsIMutI	CAGTG	6 cut(s)	280, 443, 627, 721, 911, 966
Cac8I	GCNNGC	2 cut(s)	30, 831
CaiI	CAGNNNCTG	2 cut(s)	350, 910
CciI	TCATGA	2 cut(s)	298, 367
Cfr13I	GGNCC	5 cut(s)	928, 1009, 1044, 1076, 1077
ClaI	ATCGAT	1 cut(s)	482
Csp6I	GTAC	2 cut(s)	100, 581
CviQI	GTAC	2 cut(s)	100, 581
DdeI	CTNAG	6 cut(s)	36, 250, 321, 911, 1017, 1081
DpnI	GATC	4 cut(s)	423, 555, 645, 888
DpnII	GATC	4 cut(s)	421, 553, 643, 886
DraI	TTTAAA	1 cut(s)	733
Eam1104I	CTCTTC	3 cut(s)	433, 767, 1080
EarI	CTCTTC	3 cut(s)	433, 767, 1080
Eco130I	CCWWGG	1 cut(s)	1005
Eco24I	GRGCYC	4 cut(s)	131, 154, 524, 1080
Eco31I	GGTCTC	2 cut(s)	32, 454
Eco47I	GGWCC	2 cut(s)	928, 1044
EcoO109I	RGGNCCY	3 cut(s)	928, 1044, 1077
EcoRII	CCWGG	1 cut(s)	594
EcoT14I	CCWWGG	1 cut(s)	1005
EcoT38I	GRGCYC	4 cut(s)	131, 154, 524, 1080
ErhI	CCWWGG	1 cut(s)	1005
FaqI	GGGAC	3 cut(s)	98, 301, 914
FauNDI	CATATG	1 cut(s)	741
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	7 cut(s)	204, 207, 225, 342, 345, 348, 351
FokI	GGATG	4 cut(s)	127, 439, 457, 930
FriOI	GRGCYC	4 cut(s)	131, 154, 524, 1080
Fsp4HI	GCNGC	7 cut(s)	204, 207, 225, 342, 345, 348, 351
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	7 cut(s)	204, 207, 225, 342, 345, 348, 351
GsaI	CCCAGC	1 cut(s)	127
HaeIII	GGCC	2 cut(s)	1011, 1078
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	5 cut(s)	22, 599, 789, 804, 839
HphI	GGTGA	5 cut(s)	16, 399, 468, 761, 977
Hpy166II	GTNNAC	3 cut(s)	496, 591, 964
Hpy188I	TCNGA	4 cut(s)	37, 142, 333, 1084
Hpy188III	TCNNGA	3 cut(s)	299, 368, 1019
Hpy8I	GTNNAC	3 cut(s)	496, 591, 964
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	5 cut(s)	288, 716, 821, 961, 970
HpyCH4IV	ACGT	1 cut(s)	1029
HpyCH4V	TGCA	4 cut(s)	344, 591, 857, 881
HpyF10VI	GCNNNNNNNGC	9 cut(s)	203, 212, 221, 243, 347, 350, 684, 878, 1075
HpyF3I	CTNAG	6 cut(s)	36, 250, 321, 911, 1017, 1081
HpySE526I	ACGT	1 cut(s)	1029
KflI	GGGWCCC	1 cut(s)	928
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	4 cut(s)	421, 553, 643, 886
LguI	GCTCTTC	1 cut(s)	1080
LmnI	GCTCC	4 cut(s)	120, 251, 826, 901
Lsp1109I	GCAGC	6 cut(s)	215, 218, 328, 334, 337, 356
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	1029
MaeIII	GTNAC	1 cut(s)	716
MalI	GATC	4 cut(s)	423, 555, 645, 888
MbiI	CCGCTC	1 cut(s)	227
MboI	GATC	4 cut(s)	421, 553, 643, 886
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	5 cut(s)	131, 154, 524, 593, 1080
MluCI	AATT	6 cut(s)	655, 692, 724, 734, 756, 812
MlyI	GAGTC	1 cut(s)	783
MroXI	GAANNNNTTC	1 cut(s)	864
MseI	TTAA	3 cut(s)	486, 732, 1040
MslI	CAYNNNNRTG	4 cut(s)	372, 529, 615, 767
MspA1I	CMGCKG	3 cut(s)	28, 197, 347
MspR9I	CCNGG	1 cut(s)	596
Mva1269I	GAATGC	1 cut(s)	883
MvaI	CCWGG	1 cut(s)	596
MwoI	GCNNNNNNNGC	9 cut(s)	203, 212, 221, 243, 347, 350, 684, 878, 1075
NcoI	CCATGG	1 cut(s)	1005
NdeI	CATATG	1 cut(s)	741
NdeII	GATC	4 cut(s)	421, 553, 643, 886
NlaIV	GGNNCC	7 cut(s)	247, 608, 634, 645, 929, 930, 1078
NmuCI	GTSAC	1 cut(s)	716
NspI	RCATGY	1 cut(s)	508
PagI	TCATGA	2 cut(s)	298, 367
PciI	ACATGT	1 cut(s)	504
PciSI	GCTCTTC	1 cut(s)	1080
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PctI	GAATGC	1 cut(s)	883
PdmI	GAANNNNTTC	1 cut(s)	864
PfeI	GAWTC	4 cut(s)	22, 599, 804, 839
PkrI	GCNGC	7 cut(s)	205, 208, 226, 343, 346, 349, 352
PleI	GAGTC	1 cut(s)	783
PpsI	GAGTC	1 cut(s)	783
Ppu21I	YACGTR	1 cut(s)	1030
PpuMI	RGGWCCY	2 cut(s)	928, 1044
PscI	ACATGT	1 cut(s)	504
PshBI	ATTAAT	1 cut(s)	486
Psp5II	RGGWCCY	2 cut(s)	928, 1044
Psp6I	CCWGG	1 cut(s)	594
PspFI	CCCAGC	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	7 cut(s)	247, 608, 634, 645, 929, 930, 1078
PspOMI	GGGCCC	1 cut(s)	1076
PspPI	GGNCC	5 cut(s)	928, 1009, 1044, 1076, 1077
PspPPI	RGGWCCY	2 cut(s)	928, 1044
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	2 cut(s)	350, 910
PsuI	RGATCY	1 cut(s)	643
PvuII	CAGCTG	2 cut(s)	28, 347
RsaI	GTAC	2 cut(s)	101, 582
RsaNI	GTAC	2 cut(s)	100, 581
RseI	CAYNNNNRTG	4 cut(s)	372, 529, 615, 767
SapI	GCTCTTC	1 cut(s)	1080
SaqAI	TTAA	3 cut(s)	486, 732, 1040
SatI	GCNGC	7 cut(s)	204, 207, 225, 342, 345, 348, 351
Sau3AI	GATC	4 cut(s)	421, 553, 643, 886
Sau96I	GGNCC	5 cut(s)	928, 1009, 1044, 1076, 1077
SchI	GAGTC	1 cut(s)	783
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	5 cut(s)	131, 154, 524, 593, 1080
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	2 cut(s)	928, 1044
SmiMI	CAYNNNNRTG	4 cut(s)	372, 529, 615, 767
Sse9I	AATT	6 cut(s)	655, 692, 724, 734, 756, 812
SsiI	CCGC	3 cut(s)	197, 225, 410
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	1005
TaaI	ACNGT	5 cut(s)	288, 716, 821, 961, 970
TaiI	ACGT	1 cut(s)	1032
TaqI	TCGA	3 cut(s)	68, 80, 482
TasI	AATT	6 cut(s)	655, 692, 724, 734, 756, 812
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	4 cut(s)	22, 599, 804, 839
Tru1I	TTAA	3 cut(s)	486, 732, 1040
Tru9I	TTAA	3 cut(s)	486, 732, 1040
TscAI	CASTG	6 cut(s)	280, 450, 634, 721, 911, 973
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	6 cut(s)	203, 206, 341, 344, 347, 350
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	8 cut(s)	315, 384, 423, 429, 668, 684, 785, 825
TspRI	CASTG	6 cut(s)	280, 450, 634, 721, 911, 973
VneI	GTGCAC	1 cut(s)	589
VpaK11BI	GGWCC	2 cut(s)	928, 1044
VspI	ATTAAT	1 cut(s)	486
XapI	RAATTY	4 cut(s)	724, 734, 756, 812
XceI	RCATGY	1 cut(s)	508
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1003
XmnI	GAANNNNTTC	1 cut(s)	864
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.