Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009977

Physical Location & Seq

Genomic Coordinates Forward (+)

41462842 .. 41464074

Gene Structure 1233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G500900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGTGAAGACAGAGCAAAGGGTTCAGCTCACAGAGACATCAAAGCCAATGCCATCATCCAAAACATCATCAACATCAGCATCTTCATCAGCTTGCAAGAAGAAGAAGTACAAGGGAGTGAGAATGAGGAGCTGGGGCTCATGGGTTTCAGAGATTAGAGCCCCAAATCAGAAGACAAGGATATGGTTGGGTTCATATTCTACAGCAGAGGCAGCAGCCAGAGCCTATGATGCTGCCCTCTTGTGCCTCAAGGGCTCCTCAGCCAACCTCAACTTCCCATCCACTGCCTCCTCTCATTTTATCCCTCAAGAAATTACCGTTATGTCCCCCAAGTCCATCCAGAGAGTGGCTGCAGCTGCTGCCAATAGTTTTGCCATTGATAATGCCACCACCCCAACCACCACAAGTATTGCCTCCCCACCCTCACCCCCTCCTCAATCTTCTTCATCTTCATCCTTGGTCTCCTCCCCATCAATGTCATCGTCGCCGTCCGACGACATGTCATCACTGATGGGGTCATTTGAGCCCTACACTCCTATTTATGATCATCACGATCAGGCAATTGATCAATTACCAATGTCTAGCATGGAACTATGGAACAACTTTGATGATGGCCTACAATCCCCAAAATACATTGACCAAATGTTCAATGGCGCCTTCTTCGATCCACCCATGATTTATGACTTCTATGAGGAAAGTGATATCCCCTTGTGGAGCTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

242

Amino Acids

26.31

Weight (kDa)

5.61

Isoelectric Point (pI)

72.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21910 AT1G44830 AT1G77640
fragaria_vesca	FvH4_2g26630
malus_domestica	MD08G1166100.v1.1 MD15G1352400.v1.1
prunus_persica	Prupe.1G500900_v2.0.a1
pyrus_communis	pycom08g14230 pycom15g31590
rosa_chinensis	RchiOBHm_Chr6g0295481
rosa_laevigata	RLG00000011797
rosa_multiflora	Rmu_co8378119.1_g000001 Rmu_sc0005712.1_g000029 Rmu_sc0030312.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172440
rosa_rugosa	Rorug06G0251300
rosa_samantha	Rh6AG364500 Rh6BG372800 Rh6CG379100 Rh6DG365500
rosa_wichuraiana	Rw6G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	653
AccB7I	CCANNNNNTGG	1 cut(s)	346
AclWI	GGATC	1 cut(s)	659
AcyI	GRCGYC	1 cut(s)	654
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	346
AflIII	ACRYGT	1 cut(s)	498
AgsI	TTSAA	1 cut(s)	649
AhdI	GACNNNNNGTC	1 cut(s)	499
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AluBI	AGCT	5 cut(s)	28, 92, 132, 356, 717
AluI	AGCT	5 cut(s)	28, 92, 132, 356, 717
Alw26I	GTCTC	2 cut(s)	29, 466
AlwI	GGATC	1 cut(s)	659
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	613
ApeKI	GCWGC	7 cut(s)	212, 215, 233, 350, 353, 356, 359
AspLEI	GCGC	1 cut(s)	656
AsuHPI	GGTGA	2 cut(s)	16, 417
BanI	GGYRCC	1 cut(s)	653
BanII	GRGCYC	4 cut(s)	140, 163, 257, 528
BarI	GAAGNNNNNNTAC	2 cut(s)	92, 124
BbsI	GAAGAC	2 cut(s)	14, 179
BbvCI	CCTCAGC	1 cut(s)	259
BbvI	GCAGC	7 cut(s)	220, 224, 227, 337, 343, 346, 365
BccI	CCATC	6 cut(s)	61, 286, 344, 478, 505, 605
BceAI	ACGGC	1 cut(s)	472
BclI	TGATCA	2 cut(s)	544, 565
BcoDI	GTCTC	2 cut(s)	29, 466
BfaI	CTAG	1 cut(s)	582
BfmI	CTRYAG	2 cut(s)	201, 351
BfoI	RGCGCY	1 cut(s)	657
BglI	GCCNNNNNGGC	1 cut(s)	252
BisI	GCNGC	7 cut(s)	213, 216, 234, 351, 354, 357, 360
BlsI	GCNGC	7 cut(s)	214, 217, 235, 352, 355, 358, 361
BmeRI	GACNNNNNGTC	1 cut(s)	499
BmiI	GGNNCC	2 cut(s)	256, 655
BmsI	GCATC	2 cut(s)	89, 220
BpiI	GAAGAC	2 cut(s)	14, 179
Bpu10I	CCTNAGC	1 cut(s)	259
BpuEI	CTTGAG	2 cut(s)	233, 291
BsaHI	GRCGYC	1 cut(s)	654
BsaI	GGTCTC	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	4 cut(s)	56, 278, 336, 452
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	273
BseRI	GAGGAG	5 cut(s)	142, 247, 280, 423, 454
BseXI	GCAGC	7 cut(s)	220, 224, 227, 337, 343, 346, 365
BseYI	CCCAGC	1 cut(s)	132
BshFI	GGCC	1 cut(s)	615
BshNI	GGYRCC	1 cut(s)	653
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	2 cut(s)	29, 466
BsmFI	GGGAC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	615
Bso31I	GGTCTC	1 cut(s)	466
Bsp1286I	GDGCHC	4 cut(s)	140, 163, 257, 528
Bsp143I	GATC	4 cut(s)	544, 553, 565, 664
BspANI	GGCC	1 cut(s)	615
BspCNI	CTCAG	1 cut(s)	272
BspLI	GGNNCC	2 cut(s)	256, 655
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	1 cut(s)	659
BspT107I	GGYRCC	1 cut(s)	653
BspTNI	GGTCTC	1 cut(s)	466
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	4 cut(s)	544, 553, 565, 664
BssNI	GRCGYC	1 cut(s)	654
BssT1I	CCWWGG	1 cut(s)	456
Bst4CI	ACNGT	1 cut(s)	319
BstACI	GRCGYC	1 cut(s)	654
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	259
BstF5I	GGATG	4 cut(s)	56, 278, 336, 452
BstH2I	RGCGCY	1 cut(s)	657
BstHHI	GCGC	1 cut(s)	656
BstKTI	GATC	4 cut(s)	547, 556, 568, 667
BstMAI	GTCTC	2 cut(s)	29, 466
BstMBI	GATC	4 cut(s)	544, 553, 565, 664
BstMWI	GCNNNNNNNGC	6 cut(s)	212, 221, 230, 252, 356, 359
BstNSI	RCATGY	1 cut(s)	502
BstSFI	CTRYAG	2 cut(s)	201, 351
BstV1I	GCAGC	7 cut(s)	220, 224, 227, 337, 343, 346, 365
BstV2I	GAAGAC	2 cut(s)	14, 179
BsuRI	GGCC	1 cut(s)	615
BtsCI	GGATG	4 cut(s)	56, 278, 336, 452
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	2 cut(s)	282, 506
Cac8I	GCNNGC	1 cut(s)	94
CaiI	CAGNNNCTG	1 cut(s)	359
CfoI	GCGC	1 cut(s)	656
Csp6I	GTAC	1 cut(s)	109
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviAII	CATG	4 cut(s)	141, 499, 586, 673
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	1 cut(s)	259
DinI	GGCGCC	1 cut(s)	655
DpnI	GATC	4 cut(s)	546, 555, 567, 666
DpnII	GATC	4 cut(s)	544, 553, 565, 664
DriI	GACNNNNNGTC	1 cut(s)	499
Eam1105I	GACNNNNNGTC	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	456
Eco24I	GRGCYC	4 cut(s)	140, 163, 257, 528
Eco31I	GGTCTC	1 cut(s)	466
Eco32I	GATATC	1 cut(s)	703
EcoRV	GATATC	1 cut(s)	703
EcoT14I	CCWWGG	1 cut(s)	456
EcoT38I	GRGCYC	4 cut(s)	140, 163, 257, 528
EgeI	GGCGCC	1 cut(s)	655
EheI	GGCGCC	1 cut(s)	655
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	4 cut(s)	144, 502, 589, 676
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	4 cut(s)	140, 498, 585, 672
FbaI	TGATCA	2 cut(s)	544, 565
Fnu4HI	GCNGC	7 cut(s)	213, 216, 234, 351, 354, 357, 360
FokI	GGATG	4 cut(s)	43, 265, 323, 439
FriOI	GRGCYC	4 cut(s)	140, 163, 257, 528
Fsp4HI	GCNGC	7 cut(s)	213, 216, 234, 351, 354, 357, 360
FspBI	CTAG	1 cut(s)	582
GlaI	GCGC	1 cut(s)	655
GluI	GCNGC	7 cut(s)	213, 216, 234, 351, 354, 357, 360
GsaI	CCCAGC	1 cut(s)	136
HaeII	RGCGCY	1 cut(s)	657
HaeIII	GGCC	1 cut(s)	615
HhaI	GCGC	1 cut(s)	656
Hin1I	GRCGYC	1 cut(s)	654
Hin1II	CATG	4 cut(s)	144, 502, 589, 676
Hin6I	GCGC	1 cut(s)	654
HinP1I	GCGC	1 cut(s)	654
HphI	GGTGA	2 cut(s)	16, 417
Hpy188I	TCNGA	3 cut(s)	151, 171, 493
Hpy188III	TCNNGA	3 cut(s)	308, 340, 551
Hpy99I	CGWCG	2 cut(s)	487, 497
HpyAV	CCTTC	1 cut(s)	667
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	2 cut(s)	96, 353
HpyF10VI	GCNNNNNNNGC	6 cut(s)	212, 221, 230, 252, 356, 359
HpyF3I	CTNAG	1 cut(s)	259
Hsp92I	GRCGYC	1 cut(s)	654
Hsp92II	CATG	4 cut(s)	144, 502, 589, 676
HspAI	GCGC	1 cut(s)	654
KasI	GGCGCC	1 cut(s)	653
Ksp22I	TGATCA	2 cut(s)	544, 565
Kzo9I	GATC	4 cut(s)	544, 553, 565, 664
LmnI	GCTCC	3 cut(s)	129, 260, 714
LpnPI	CCDG	4 cut(s)	118, 232, 353, 542
Lsp1109I	GCAGC	7 cut(s)	220, 224, 227, 337, 343, 346, 365
LweI	GCATC	2 cut(s)	89, 220
MaeI	CTAG	1 cut(s)	582
MalI	GATC	4 cut(s)	546, 555, 567, 666
MboI	GATC	4 cut(s)	544, 553, 565, 664
MboII	GAAGA	9 cut(s)	19, 75, 112, 115, 184, 432, 435, 441, 652
MfeI	CAATTG	1 cut(s)	561
MhlI	GDGCHC	4 cut(s)	140, 163, 257, 528
MluCI	AATT	3 cut(s)	312, 561, 569
Mly113I	GGCGCC	1 cut(s)	654
MmeI	TCCRAC	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	356
MunI	CAATTG	1 cut(s)	561
MwoI	GCNNNNNNNGC	6 cut(s)	212, 221, 230, 252, 356, 359
NarI	GGCGCC	1 cut(s)	654
NdeII	GATC	4 cut(s)	544, 553, 565, 664
NlaIII	CATG	4 cut(s)	144, 502, 589, 676
NlaIV	GGNNCC	2 cut(s)	256, 655
NspI	RCATGY	1 cut(s)	502
PciI	ACATGT	1 cut(s)	498
PflMI	CCANNNNNTGG	1 cut(s)	346
PkrI	GCNGC	7 cut(s)	214, 217, 235, 352, 355, 358, 361
PluTI	GGCGCC	1 cut(s)	657
PscI	ACATGT	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	256, 655
PstI	CTGCAG	1 cut(s)	355
PstNI	CAGNNNCTG	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SatI	GCNGC	7 cut(s)	213, 216, 234, 351, 354, 357, 360
Sau3AI	GATC	4 cut(s)	544, 553, 565, 664
SduI	GDGCHC	4 cut(s)	140, 163, 257, 528
SetI	ASST	6 cut(s)	30, 94, 134, 270, 358, 719
SfaNI	GCATC	2 cut(s)	89, 220
SfcI	CTRYAG	2 cut(s)	201, 351
SfoI	GGCGCC	1 cut(s)	655
SmlI	CTYRAG	2 cut(s)	248, 306
SmoI	CTYRAG	2 cut(s)	248, 306
Sse9I	AATT	3 cut(s)	312, 561, 569
SspDI	GGCGCC	1 cut(s)	653
SspMI	CTAG	1 cut(s)	582
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	663
TasI	AATT	3 cut(s)	312, 561, 569
TatI	WGTACW	1 cut(s)	108
TscAI	CASTG	2 cut(s)	289, 513
TseI	GCWGC	7 cut(s)	212, 215, 233, 350, 353, 356, 359
TspDTI	ATGAA	4 cut(s)	75, 183, 435, 441
TspRI	CASTG	2 cut(s)	289, 513
Van91I	CCANNNNNTGG	1 cut(s)	346
XceI	RCATGY	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	2 cut(s)	343, 647
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.