Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009977

Physical Location & Seq

Genomic Coordinates Forward (+)

42128100 .. 42128813

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1352400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGTGAAGACGGAGCAGAGGATTCTTCAGCTGCCTTCAGAGGTGACATCATCGAAAACAACATCGACATCTTCTTCTTCTTCTTCTTCTTCCTCAGCATGCAAGAAGAAGTTTAAGGGAGTGAGGATGAGGAGCTGGGGCTCTTGGGTTTCAGAGATTAGGGCTCCAAACCAAAAAACAAGAATATGGTTAGGCTCATATTCTACTGCTGAGGCTGCAGCGAGAGCCTATGATGCTGCCCTACTGTGCCTCAAGGGCTCCTCAGCCAACCTCAACTTCCCCACCACTGCCTCCTCACATTTTATCCCCCAAGAAATGACAGTCATGTCCCCCAAATCCATCCAAAGAGTGGCTGCAGCCGCTGCCAATAGTTTTGTTCTTGATAATAATGCCGCTACCACCACCGCAAACATTGCCTTGCCACCATCGGCCCCTCCTCAATCTACTTCTTCCTCATCTTTGGTCTCGTCTCCCTCGATGTCGTCCTCGCCGTCCAGTAACCTCATCGACGACGACATGTCATCGCTGATGGGTTCATTTGGGGGGTCCTACACTCCCACTTACTATGATCAATCAAACGATCAATTACCAATGTTTAGCATGGACTCATGGAACAACTTCGACCAAATGTTCGATGGCGCCTTGAATCCACATCCACATATGATGTATGACTTATATGAGGAGAGTGACATTCGCTTGTGGAGCTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

238

Amino Acids

25.7

Weight (kDa)

5.89

Isoelectric Point (pI)

68.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	37 - 86	6.5e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21910 AT1G44830 AT1G77640
fragaria_vesca	FvH4_2g26630
malus_domestica	MD08G1166100.v1.1 MD15G1352400.v1.1
prunus_persica	Prupe.1G500900_v2.0.a1
pyrus_communis	pycom08g14230 pycom15g31590
rosa_chinensis	RchiOBHm_Chr6g0295481
rosa_laevigata	RLG00000011797
rosa_multiflora	Rmu_co8378119.1_g000001 Rmu_sc0005712.1_g000029 Rmu_sc0030312.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172440
rosa_rugosa	Rorug06G0251300
rosa_samantha	Rh6AG364500 Rh6BG372800 Rh6CG379100 Rh6DG365500
rosa_wichuraiana	Rw6G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	325
AccB1I	GGYRCC	1 cut(s)	638
AccB7I	CCANNNNNTGG	1 cut(s)	349
AciI	CCGC	3 cut(s)	360, 393, 405
AcuI	CTGAAG	2 cut(s)	11, 21
AcyI	GRCGYC	1 cut(s)	639
AfiI	CCNNNNNNNGG	1 cut(s)	349
AflIII	ACRYGT	1 cut(s)	516
AgsI	TTSAA	1 cut(s)	646
AhdI	GACNNNNNGTC	1 cut(s)	517
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	3 cut(s)	31, 135, 705
AluI	AGCT	3 cut(s)	31, 135, 705
Alw26I	GTCTC	2 cut(s)	469, 474
AlwNI	CAGNNNCTG	1 cut(s)	362
AoxI	GGCC	1 cut(s)	429
ApeKI	GCWGC	7 cut(s)	31, 215, 218, 236, 353, 356, 362
ArsI	GACNNNNNNTTYG	2 cut(s)	614, 646
Asp700I	GAANNNNTTC	1 cut(s)	617
AspLEI	GCGC	1 cut(s)	641
AspS9I	GGNCC	2 cut(s)	430, 546
AsuHPI	GGTGA	2 cut(s)	16, 55
AvaII	GGWCC	1 cut(s)	546
BanI	GGYRCC	1 cut(s)	638
BanII	GRGCYC	3 cut(s)	143, 166, 260
BbsI	GAAGAC	1 cut(s)	14
BbvCI	CCTCAGC	3 cut(s)	94, 210, 262
BbvI	GCAGC	7 cut(s)	18, 202, 223, 230, 340, 349, 368
BccI	CCATC	4 cut(s)	347, 433, 523, 629
BceAI	ACGGC	1 cut(s)	475
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	2 cut(s)	469, 474
BfmI	CTRYAG	2 cut(s)	216, 354
BfoI	RGCGCY	1 cut(s)	642
BglI	GCCNNNNNGGC	1 cut(s)	255
BisI	GCNGC	9 cut(s)	32, 216, 219, 237, 354, 357, 360, 363, 393
BlsI	GCNGC	9 cut(s)	33, 217, 220, 238, 355, 358, 361, 364, 394
Bme18I	GGWCC	1 cut(s)	546
BmeRI	GACNNNNNGTC	1 cut(s)	517
BmgT120I	GGNCC	2 cut(s)	430, 546
BmiI	GGNNCC	5 cut(s)	165, 259, 432, 547, 640
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	14
Bpu10I	CCTNAGC	3 cut(s)	94, 210, 262
BpuEI	CTTGAG	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	639
BsaI	GGTCTC	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	495
Bse3DI	GCAATG	1 cut(s)	411
BseGI	GGATG	3 cut(s)	132, 339, 652
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	3 cut(s)	108, 201, 276
BseNI	ACTGG	1 cut(s)	495
BseRI	GAGGAG	5 cut(s)	145, 250, 283, 426, 695
BseXI	GCAGC	7 cut(s)	18, 202, 223, 230, 340, 349, 368
BseYI	CCCAGC	1 cut(s)	135
BshFI	GGCC	1 cut(s)	431
BshNI	GGYRCC	1 cut(s)	638
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	2 cut(s)	469, 474
BsmBI	CGTCTC	1 cut(s)	474
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	431
Bso31I	GGTCTC	1 cut(s)	469
Bsp1286I	GDGCHC	3 cut(s)	143, 166, 260
Bsp143I	GATC	2 cut(s)	568, 580
BspACI	CCGC	3 cut(s)	360, 393, 405
BspANI	GGCC	1 cut(s)	431
BspCNI	CTCAG	3 cut(s)	107, 202, 275
BspLI	GGNNCC	5 cut(s)	165, 259, 432, 547, 640
BspMAI	CTGCAG	2 cut(s)	220, 358
BspT107I	GGYRCC	1 cut(s)	638
BspTNI	GGTCTC	1 cut(s)	469
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	1 cut(s)	495
BssMI	GATC	2 cut(s)	568, 580
BssNI	GRCGYC	1 cut(s)	639
Bst4CI	ACNGT	2 cut(s)	246, 322
BstACI	GRCGYC	1 cut(s)	639
BstAPI	GCANNNNNTGC	2 cut(s)	362, 413
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	3 cut(s)	94, 210, 262
BstF5I	GGATG	3 cut(s)	132, 339, 652
BstH2I	RGCGCY	1 cut(s)	642
BstHHI	GCGC	1 cut(s)	641
BstKTI	GATC	2 cut(s)	571, 583
BstMAI	GTCTC	2 cut(s)	469, 474
BstMBI	GATC	2 cut(s)	568, 580
BstMWI	GCNNNNNNNGC	8 cut(s)	215, 224, 233, 255, 359, 362, 413, 702
BstNSI	RCATGY	2 cut(s)	102, 520
BstSFI	CTRYAG	2 cut(s)	216, 354
BstV1I	GCAGC	7 cut(s)	18, 202, 223, 230, 340, 349, 368
BstV2I	GAAGAC	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	431
BtgZI	GCGATG	1 cut(s)	507
BtsCI	GGATG	3 cut(s)	132, 339, 652
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	100
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	1 cut(s)	641
Cfr13I	GGNCC	2 cut(s)	430, 546
CviAII	CATG	5 cut(s)	99, 325, 517, 601, 609
DdeI	CTNAG	3 cut(s)	94, 210, 262
DinI	GGCGCC	1 cut(s)	640
DpnI	GATC	2 cut(s)	570, 582
DpnII	GATC	2 cut(s)	568, 580
DrdI	GACNNNNNNGTC	1 cut(s)	325
DriI	GACNNNNNGTC	1 cut(s)	517
DseDI	GACNNNNNNGTC	1 cut(s)	325
Eam1105I	GACNNNNNGTC	1 cut(s)	517
Eco24I	GRGCYC	3 cut(s)	143, 166, 260
Eco31I	GGTCTC	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	546
Eco57I	CTGAAG	2 cut(s)	11, 21
EcoO109I	RGGNCCY	1 cut(s)	546
EcoT38I	GRGCYC	3 cut(s)	143, 166, 260
EgeI	GGCGCC	1 cut(s)	640
EheI	GGCGCC	1 cut(s)	640
Esp3I	CGTCTC	1 cut(s)	474
FaeI	CATG	5 cut(s)	102, 328, 520, 604, 612
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	5 cut(s)	98, 324, 516, 600, 608
FauNDI	CATATG	1 cut(s)	660
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	9 cut(s)	32, 216, 219, 237, 354, 357, 360, 363, 393
FokI	GGATG	3 cut(s)	139, 326, 639
FriOI	GRGCYC	3 cut(s)	143, 166, 260
Fsp4HI	GCNGC	9 cut(s)	32, 216, 219, 237, 354, 357, 360, 363, 393
GlaI	GCGC	1 cut(s)	640
GluI	GCNGC	9 cut(s)	32, 216, 219, 237, 354, 357, 360, 363, 393
GsaI	CCCAGC	1 cut(s)	139
HaeII	RGCGCY	1 cut(s)	642
HaeIII	GGCC	1 cut(s)	431
HhaI	GCGC	1 cut(s)	641
Hin1I	GRCGYC	1 cut(s)	639
Hin1II	CATG	5 cut(s)	102, 328, 520, 604, 612
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HinfI	GANTC	3 cut(s)	22, 605, 646
HphI	GGTGA	2 cut(s)	16, 55
Hpy188I	TCNGA	2 cut(s)	40, 154
Hpy188III	TCNNGA	1 cut(s)	380
Hpy99I	CGWCG	2 cut(s)	512, 515
HpyAV	CCTTC	1 cut(s)	45
HpyCH4III	ACNGT	2 cut(s)	246, 322
HpyCH4V	TGCA	3 cut(s)	102, 218, 356
HpyF10VI	GCNNNNNNNGC	8 cut(s)	215, 224, 233, 255, 359, 362, 413, 702
HpyF3I	CTNAG	3 cut(s)	94, 210, 262
Hsp92I	GRCGYC	1 cut(s)	639
Hsp92II	CATG	5 cut(s)	102, 328, 520, 604, 612
HspAI	GCGC	1 cut(s)	639
KasI	GGCGCC	1 cut(s)	638
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	2 cut(s)	568, 580
LmnI	GCTCC	5 cut(s)	13, 132, 169, 263, 702
LpnPI	CCDG	2 cut(s)	121, 508
Lsp1109I	GCAGC	7 cut(s)	18, 202, 223, 230, 340, 349, 368
LweI	GCATC	1 cut(s)	223
MaeIII	GTNAC	3 cut(s)	43, 497, 686
MalI	GATC	2 cut(s)	570, 582
MboI	GATC	2 cut(s)	568, 580
MhlI	GDGCHC	3 cut(s)	143, 166, 260
MluCI	AATT	1 cut(s)	584
Mly113I	GGCGCC	1 cut(s)	639
MlyI	GAGTC	1 cut(s)	599
MroXI	GAANNNNTTC	1 cut(s)	617
MseI	TTAA	1 cut(s)	114
MspA1I	CMGCKG	2 cut(s)	31, 362
MwoI	GCNNNNNNNGC	8 cut(s)	215, 224, 233, 255, 359, 362, 413, 702
NarI	GGCGCC	1 cut(s)	639
NdeI	CATATG	1 cut(s)	660
NdeII	GATC	2 cut(s)	568, 580
NlaIII	CATG	5 cut(s)	102, 328, 520, 604, 612
NlaIV	GGNNCC	5 cut(s)	165, 259, 432, 547, 640
NmuCI	GTSAC	2 cut(s)	43, 686
NspI	RCATGY	2 cut(s)	102, 520
PaeI	GCATGC	1 cut(s)	102
PciI	ACATGT	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	2 cut(s)	473, 488
PdmI	GAANNNNTTC	1 cut(s)	617
PfeI	GAWTC	2 cut(s)	22, 646
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	9 cut(s)	33, 217, 220, 238, 355, 358, 361, 364, 394
PleI	GAGTC	1 cut(s)	599
PluTI	GGCGCC	1 cut(s)	642
PpsI	GAGTC	1 cut(s)	599
PpuMI	RGGWCCY	1 cut(s)	546
PscI	ACATGT	1 cut(s)	516
Psp5II	RGGWCCY	1 cut(s)	546
PspFI	CCCAGC	1 cut(s)	135
PspN4I	GGNNCC	5 cut(s)	165, 259, 432, 547, 640
PspPI	GGNCC	2 cut(s)	430, 546
PspPPI	RGGWCCY	1 cut(s)	546
PstI	CTGCAG	2 cut(s)	220, 358
PstNI	CAGNNNCTG	1 cut(s)	362
PvuII	CAGCTG	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	9 cut(s)	32, 216, 219, 237, 354, 357, 360, 363, 393
Sau3AI	GATC	2 cut(s)	568, 580
Sau96I	GGNCC	2 cut(s)	430, 546
SchI	GAGTC	1 cut(s)	599
SduI	GDGCHC	3 cut(s)	143, 166, 260
SetI	ASST	6 cut(s)	33, 45, 137, 273, 504, 707
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	2 cut(s)	216, 354
SfoI	GGCGCC	1 cut(s)	640
SinI	GGWCC	1 cut(s)	546
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SphI	GCATGC	1 cut(s)	102
Sse9I	AATT	1 cut(s)	584
SsiI	CCGC	3 cut(s)	360, 393, 405
SspDI	GGCGCC	1 cut(s)	638
TaaI	ACNGT	2 cut(s)	246, 322
TaqI	TCGA	6 cut(s)	53, 65, 476, 507, 621, 633
TasI	AATT	1 cut(s)	584
TauI	GCSGC	2 cut(s)	362, 395
TfiI	GAWTC	2 cut(s)	22, 646
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	2 cut(s)	43, 686
TseI	GCWGC	7 cut(s)	31, 215, 218, 236, 353, 356, 362
Tsp45I	GTSAC	2 cut(s)	43, 686
TspDTI	ATGAA	1 cut(s)	525
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	1 cut(s)	292
Van91I	CCANNNNNTGG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	546
XceI	RCATGY	2 cut(s)	102, 520
XcmI	CCANNNNNNNNNTGG	2 cut(s)	346, 632
XmnI	GAANNNNTTC	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.