Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009977

Physical Location & Seq

Genomic Coordinates Forward (+)

29178705 .. 29179877

Gene Structure 1173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGTGAAACAAGAACTCAAGATCCAAGTTACTACTTCCTCATCATCACTCTCTCATTCTTCATCTTCTTCTTCTTCTTCAACGTCGGCACTACGTCATCAATCTTGTAAGAACAAGATAAAGAAGTATAAAGGTGTGAGGATGCGAAGTTGGGGATCATGGGTTACTGAAATTAGGGCACCAAATCAAAAGACAAGAATCTGGTTAGGTTCTTACTCCACCGCAGAAGCAGCTGCTAGGGCTTACGACGCTGCTCTCTTGTGTCTTAAGGGACCTAAAGCTAATCTCAACTTCCCTAACATCACCACTACTTCTCCTTTTCTTATGAACATCGACGAAAAGACCCTTTTGTCCCCAAAATCAATCCAAAAGGTCGCCGCTCAAGCCGCTAACTCCTCTTCTGACCATTTTACCCCTCCGTCCGATGAAAATGATCATGATCATGATGACGGACTCGATCACCATCCATCTGCTTCTTCTTCAGCTGCATCTTCACCACCAGATGATGATCATCATAATGATGACGATGGTGATTTGGTATCGTTGATGGAATCTTTCGTGGATTACAACGAACACGTGTCTCTGATGGATCCATCGCTGTATGAATTTGGACATAATGAGATCTTCTTCACCAACGGAGATCCGTTTGATTATTCTCCACAGTTACATAGCTCAGAGGCAACGATGGATGACTTCTACGACGATGTTGATATTCCGCTATGGAGTTTCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002376 GO:0002682 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009607 GO:0009611 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009861 GO:0009863 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010675 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032870 GO:0032881 GO:0032885 GO:0033554 GO:0034605 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071497 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1900030 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

244

Amino Acids

26.98

Weight (kDa)

4.97

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	42 - 91	1.6e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21910 AT1G44830 AT1G77640
fragaria_vesca	FvH4_2g26630
malus_domestica	MD08G1166100.v1.1 MD15G1352400.v1.1
prunus_persica	Prupe.1G500900_v2.0.a1
pyrus_communis	pycom08g14230 pycom15g31590
rosa_chinensis	RchiOBHm_Chr6g0295481
rosa_laevigata	RLG00000011797
rosa_multiflora	Rmu_co8378119.1_g000001 Rmu_sc0005712.1_g000029 Rmu_sc0030312.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172440
rosa_rugosa	Rorug06G0251300
rosa_samantha	Rh6AG364500 Rh6BG372800 Rh6CG379100 Rh6DG365500
rosa_wichuraiana	Rw6G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	349
AccB1I	GGYRCC	1 cut(s)	178
AccBSI	CCGCTC	1 cut(s)	380
AciI	CCGC	4 cut(s)	222, 378, 387, 716
AclWI	GGATC	5 cut(s)	16, 163, 584, 597, 635
AcsI	RAATTY	1 cut(s)	605
AcuI	CTGAAG	1 cut(s)	465
AcvI	CACGTG	1 cut(s)	577
AflII	CTTAAG	1 cut(s)	266
AflIII	ACRYGT	2 cut(s)	574, 576
AgsI	TTSAA	1 cut(s)	81
AloI	GAACNNNNNNTCC	1 cut(s)	38
AluBI	AGCT	4 cut(s)	233, 281, 485, 672
AluI	AGCT	4 cut(s)	233, 281, 485, 672
Alw26I	GTCTC	1 cut(s)	585
AlwI	GGATC	5 cut(s)	16, 163, 584, 597, 635
ApeKI	GCWGC	4 cut(s)	230, 233, 251, 485
ApoI	RAATTY	1 cut(s)	605
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	6 cut(s)	16, 295, 452, 486, 542, 622
AvaII	GGWCC	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	181
BamHI	GGATCC	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	178
BbrPI	CACGTG	1 cut(s)	577
BbvI	GCAGC	4 cut(s)	220, 238, 242, 472
BccI	CCATC	7 cut(s)	471, 475, 521, 541, 580, 601, 679
BclI	TGATCA	3 cut(s)	433, 439, 508
BcoDI	GTCTC	1 cut(s)	585
BfaI	CTAG	1 cut(s)	237
BfrI	CTTAAG	1 cut(s)	266
BglII	AGATCT	1 cut(s)	621
BisI	GCNGC	6 cut(s)	231, 234, 252, 378, 387, 486
BlsI	GCNGC	6 cut(s)	232, 235, 253, 379, 388, 487
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	3 cut(s)	180, 273, 591
BmsI	GCATC	2 cut(s)	132, 497
BpuEI	CTTGAG	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	577
BsaBI	GATNNNNATC	4 cut(s)	438, 462, 507, 510
BsaXI	ACNNNNNCTCC	3 cut(s)	298, 328, 715
Bse8I	GATNNNNATC	4 cut(s)	438, 462, 507, 510
BseGI	GGATG	3 cut(s)	147, 463, 694
BseJI	GATNNNNATC	4 cut(s)	438, 462, 507, 510
BseMII	CTCAG	1 cut(s)	687
BseRI	GAGGAG	1 cut(s)	385
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	4 cut(s)	220, 238, 242, 472
BshNI	GGYRCC	1 cut(s)	178
BslFI	GGGAC	2 cut(s)	285, 337
BsmAI	GTCTC	1 cut(s)	585
BsmFI	GGGAC	2 cut(s)	285, 337
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	9 cut(s)	21, 155, 433, 439, 457, 508, 589, 621, 640
BspACI	CCGC	4 cut(s)	222, 378, 387, 716
BspCNI	CTCAG	1 cut(s)	686
BspHI	TCATGA	2 cut(s)	436, 442
BspLI	GGNNCC	3 cut(s)	180, 273, 591
BspPI	GGATC	5 cut(s)	16, 163, 584, 597, 635
BspT107I	GGYRCC	1 cut(s)	178
BspTI	CTTAAG	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	380
BssMI	GATC	9 cut(s)	21, 155, 433, 439, 457, 508, 589, 621, 640
Bst4CI	ACNGT	1 cut(s)	663
Bst6I	CTCTTC	1 cut(s)	403
BstAFI	CTTAAG	1 cut(s)	266
BstBAI	YACGTR	1 cut(s)	577
BstDEI	CTNAG	1 cut(s)	673
BstF5I	GGATG	3 cut(s)	147, 463, 694
BstKTI	GATC	9 cut(s)	24, 158, 436, 442, 460, 511, 592, 624, 643
BstMAI	GTCTC	1 cut(s)	585
BstMBI	GATC	9 cut(s)	21, 155, 433, 439, 457, 508, 589, 621, 640
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 239, 248, 383, 386
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	4 cut(s)	220, 238, 242, 472
BstX2I	RGATCY	4 cut(s)	21, 589, 621, 640
BstYI	RGATCY	4 cut(s)	21, 589, 621, 640
BtgZI	GCGATG	1 cut(s)	579
BtsCI	GGATG	3 cut(s)	147, 463, 694
CciI	TCATGA	2 cut(s)	436, 442
Cfr13I	GGNCC	1 cut(s)	272
CseI	GACGC	1 cut(s)	257
CviAII	CATG	3 cut(s)	159, 437, 443
CviJI	RGCY	6 cut(s)	233, 242, 281, 386, 485, 672
CviKI_1	RGCY	6 cut(s)	233, 242, 281, 386, 485, 672
DdeI	CTNAG	1 cut(s)	673
DpnI	GATC	9 cut(s)	23, 157, 435, 441, 459, 510, 591, 623, 642
DpnII	GATC	9 cut(s)	21, 155, 433, 439, 457, 508, 589, 621, 640
DrdI	GACNNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	403
EarI	CTCTTC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	465
Eco72I	CACGTG	1 cut(s)	577
EcoO109I	RGGNCCY	1 cut(s)	272
FaeI	CATG	3 cut(s)	162, 440, 446
FaqI	GGGAC	2 cut(s)	285, 337
FatI	CATG	3 cut(s)	158, 436, 442
FbaI	TGATCA	3 cut(s)	433, 439, 508
Fnu4HI	GCNGC	6 cut(s)	231, 234, 252, 378, 387, 486
FokI	GGATG	3 cut(s)	154, 450, 701
Fsp4HI	GCNGC	6 cut(s)	231, 234, 252, 378, 387, 486
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	6 cut(s)	231, 234, 252, 378, 387, 486
HgaI	GACGC	1 cut(s)	257
Hin1II	CATG	3 cut(s)	162, 440, 446
HinfI	GANTC	3 cut(s)	198, 453, 551
HphI	GGTGA	6 cut(s)	16, 295, 452, 486, 542, 622
Hpy188I	TCNGA	4 cut(s)	403, 424, 585, 676
Hpy188III	TCNNGA	3 cut(s)	19, 437, 443
Hpy99I	CGWCG	4 cut(s)	88, 251, 338, 704
HpyCH4III	ACNGT	1 cut(s)	663
HpyCH4IV	ACGT	3 cut(s)	83, 94, 576
HpyCH4V	TGCA	1 cut(s)	488
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 239, 248, 383, 386
HpyF3I	CTNAG	1 cut(s)	673
HpySE526I	ACGT	3 cut(s)	83, 94, 576
Hsp92II	CATG	3 cut(s)	162, 440, 446
Ksp22I	TGATCA	3 cut(s)	433, 439, 508
Kzo9I	GATC	9 cut(s)	21, 155, 433, 439, 457, 508, 589, 621, 640
LpnPI	CCDG	2 cut(s)	187, 513
Lsp1109I	GCAGC	4 cut(s)	220, 238, 242, 472
LweI	GCATC	2 cut(s)	132, 497
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	3 cut(s)	83, 94, 576
MaeIII	GTNAC	3 cut(s)	28, 163, 663
MalI	GATC	9 cut(s)	23, 157, 435, 441, 459, 510, 591, 623, 642
MbiI	CCGCTC	1 cut(s)	380
MboI	GATC	9 cut(s)	21, 155, 433, 439, 457, 508, 589, 621, 640
MflI	RGATCY	4 cut(s)	21, 589, 621, 640
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	2 cut(s)	171, 605
MlyI	GAGTC	1 cut(s)	447
MnlI	CCTC	5 cut(s)	49, 132, 406, 426, 670
MseI	TTAA	2 cut(s)	267, 733
MslI	CAYNNNNRTG	3 cut(s)	441, 516, 519
MspA1I	CMGCKG	2 cut(s)	233, 485
MspCI	CTTAAG	1 cut(s)	266
MwoI	GCNNNNNNNGC	5 cut(s)	230, 239, 248, 383, 386
NdeII	GATC	9 cut(s)	21, 155, 433, 439, 457, 508, 589, 621, 640
NlaIII	CATG	3 cut(s)	162, 440, 446
NlaIV	GGNNCC	3 cut(s)	180, 273, 591
PagI	TCATGA	2 cut(s)	436, 442
PfeI	GAWTC	2 cut(s)	198, 551
PkrI	GCNGC	6 cut(s)	232, 235, 253, 379, 388, 487
PleI	GAGTC	1 cut(s)	447
PmaCI	CACGTG	1 cut(s)	577
PmlI	CACGTG	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	447
Ppu21I	YACGTR	1 cut(s)	577
PpuMI	RGGWCCY	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	272
PspCI	CACGTG	1 cut(s)	577
PspN4I	GGNNCC	3 cut(s)	180, 273, 591
PspPI	GGNCC	1 cut(s)	272
PspPPI	RGGWCCY	1 cut(s)	272
PsuI	RGATCY	4 cut(s)	21, 589, 621, 640
PvuII	CAGCTG	2 cut(s)	233, 485
RseI	CAYNNNNRTG	3 cut(s)	441, 516, 519
SaqAI	TTAA	2 cut(s)	267, 733
SatI	GCNGC	6 cut(s)	231, 234, 252, 378, 387, 486
Sau3AI	GATC	9 cut(s)	21, 155, 433, 439, 457, 508, 589, 621, 640
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	1 cut(s)	447
SduI	GDGCHC	1 cut(s)	181
SfaNI	GCATC	2 cut(s)	132, 497
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	3 cut(s)	441, 516, 519
SmlI	CTYRAG	3 cut(s)	17, 266, 381
SmoI	CTYRAG	3 cut(s)	17, 266, 381
Sse9I	AATT	2 cut(s)	171, 605
SsiI	CCGC	4 cut(s)	222, 378, 387, 716
SspMI	CTAG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	663
TaiI	ACGT	3 cut(s)	86, 97, 579
TaqI	TCGA	2 cut(s)	333, 456
TasI	AATT	2 cut(s)	171, 605
TauI	GCSGC	2 cut(s)	380, 389
TfiI	GAWTC	2 cut(s)	198, 551
Tru1I	TTAA	2 cut(s)	267, 733
Tru9I	TTAA	2 cut(s)	267, 733
TseI	GCWGC	4 cut(s)	230, 233, 251, 485
TspDTI	ATGAA	4 cut(s)	51, 341, 441, 618
TspGWI	ACGGA	4 cut(s)	408, 465, 633, 651
Vha464I	CTTAAG	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	605
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.