Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8378119.1

Orthogroup ID

OG0009977

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 512

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8378119.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 512 bp

cagcggaagcagcagccagagcctatgatgccgctctcttgtgcctcaaaggctcctcagccaatctcaacttcccaatcagtgcctcctcacagtttgttcctcatgaaaatactatcatgtccccgaagtccattcagagagtagctgcagctgctgctaatagcttcaatcatgaaaatgccaccaccatcacagcctcatctccaccatcaccggctcctaatgatctctcttcttcatcttcatcactggtctcatccccatcaatgtcatcatcctcaccgtcgattaatctcgttgacgatgacatgtcctcgctgatgggatcatttgggtcctatactcctactacttatgatcataatccacaggcggactatgatgtaccaatctgcaccatggaatcatggaacaactttgatgatttattcactggtgccttgttggatccaccaatgaattatgacttctatgaagaaagcgatattcgcttgtggagcttctgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

169

Amino Acids

18.08

Weight (kDa)

4.05

Isoelectric Point (pI)

70.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21910 AT1G44830 AT1G77640
fragaria_vesca	FvH4_2g26630
malus_domestica	MD08G1166100.v1.1 MD15G1352400.v1.1
prunus_persica	Prupe.1G500900_v2.0.a1
pyrus_communis	pycom08g14230 pycom15g31590
rosa_chinensis	RchiOBHm_Chr6g0295481
rosa_laevigata	RLG00000011797
rosa_multiflora	Rmu_co8378119.1_g000001 Rmu_sc0005712.1_g000029 Rmu_sc0030312.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172440
rosa_rugosa	Rorug06G0251300
rosa_samantha	Rh6AG364500 Rh6BG372800 Rh6CG379100 Rh6DG365500
rosa_wichuraiana	Rw6G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	439
AccBSI	CCGCTC	1 cut(s)	34
AciI	CCGC	3 cut(s)	4, 32, 376
AclWI	GGATC	3 cut(s)	336, 445, 458
AfaI	GTAC	1 cut(s)	389
AflIII	ACRYGT	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	171
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
AluBI	AGCT	4 cut(s)	148, 154, 167, 503
AluI	AGCT	4 cut(s)	148, 154, 167, 503
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	3 cut(s)	336, 445, 458
AlwNI	CAGNNNCTG	1 cut(s)	157
ApeKI	GCWGC	6 cut(s)	10, 13, 148, 151, 154, 157
AseI	ATTAAT	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	206, 275
AvaII	GGWCC	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	450
BanI	GGYRCC	1 cut(s)	439
BbvCI	CCTCAGC	1 cut(s)	57
BbvI	GCAGC	6 cut(s)	22, 25, 135, 141, 144, 163
BccI	CCATC	4 cut(s)	199, 219, 273, 318
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	149
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	7 cut(s)	11, 14, 32, 149, 152, 155, 158
BlsI	GCNGC	7 cut(s)	12, 15, 33, 150, 153, 156, 159
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	5 cut(s)	54, 221, 339, 441, 452
BmsI	GCATC	1 cut(s)	18
Bpu10I	CCTNAGC	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	365
BsaI	GGTCTC	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	401
Bse118I	RCCGGY	1 cut(s)	216
Bse1I	ACTGG	2 cut(s)	257, 441
Bse8I	GATNNNNATC	1 cut(s)	365
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	2 cut(s)	259, 277
BseJI	GATNNNNATC	1 cut(s)	365
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	2 cut(s)	257, 441
BseRI	GAGGAG	2 cut(s)	45, 78
BseXI	GCAGC	6 cut(s)	22, 25, 135, 141, 144, 163
BsgI	GTGCAG	1 cut(s)	381
BshNI	GGYRCC	1 cut(s)	439
BsiSI	CCGG	1 cut(s)	217
BslFI	GGGAC	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	108
Bso31I	GGTCTC	1 cut(s)	261
Bsp143I	GATC	4 cut(s)	228, 328, 360, 450
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	3 cut(s)	4, 32, 376
BspCNI	CTCAG	1 cut(s)	70
BspHI	TCATGA	2 cut(s)	105, 174
BspLI	GGNNCC	5 cut(s)	54, 221, 339, 441, 452
BspMAI	CTGCAG	1 cut(s)	153
BspPI	GGATC	3 cut(s)	336, 445, 458
BspT107I	GGYRCC	1 cut(s)	439
BspTNI	GGTCTC	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	257, 441
BssAI	RCCGGY	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	4 cut(s)	228, 328, 360, 450
BssT1I	CCWWGG	1 cut(s)	401
Bst4CI	ACNGT	2 cut(s)	95, 287
Bst6I	CTCTTC	1 cut(s)	240
BstAPI	GCANNNNNTGC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	2 cut(s)	259, 277
BstKTI	GATC	4 cut(s)	231, 331, 363, 453
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	4 cut(s)	228, 328, 360, 450
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 19, 28, 50, 154, 157, 491, 500
BstNSI	RCATGY	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	149
BstV1I	GCAGC	6 cut(s)	22, 25, 135, 141, 144, 163
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	259, 277
BtsIMutI	CAGTG	3 cut(s)	87, 250, 434
CaiI	CAGNNNCTG	1 cut(s)	157
CciI	TCATGA	2 cut(s)	105, 174
Cfr10I	RCCGGY	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	6 cut(s)	106, 120, 175, 312, 402, 410
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	4 cut(s)	230, 330, 362, 452
DpnII	GATC	4 cut(s)	228, 328, 360, 450
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	401
Eco31I	GGTCTC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	6 cut(s)	109, 123, 178, 315, 405, 413
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	6 cut(s)	105, 119, 174, 311, 401, 409
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	7 cut(s)	11, 14, 32, 149, 152, 155, 158
FokI	GGATG	2 cut(s)	246, 264
Fsp4HI	GCNGC	7 cut(s)	11, 14, 32, 149, 152, 155, 158
GluI	GCNGC	7 cut(s)	11, 14, 32, 149, 152, 155, 158
HapII	CCGG	1 cut(s)	217
Hin1II	CATG	6 cut(s)	109, 123, 178, 315, 405, 413
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HinfI	GANTC	1 cut(s)	406
HpaII	CCGG	1 cut(s)	217
HphI	GGTGA	2 cut(s)	206, 275
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	1 cut(s)	140
Hpy188III	TCNNGA	2 cut(s)	106, 175
Hpy8I	GTNNAC	1 cut(s)	303
Hpy99I	CGWCG	1 cut(s)	291
HpyCH4III	ACNGT	2 cut(s)	95, 287
HpyCH4V	TGCA	2 cut(s)	151, 398
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 19, 28, 50, 154, 157, 491, 500
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	6 cut(s)	109, 123, 178, 315, 405, 413
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	4 cut(s)	228, 328, 360, 450
LmnI	GCTCC	3 cut(s)	58, 225, 500
LpnPI	CCDG	5 cut(s)	30, 230, 238, 358, 422
Lsp1109I	GCAGC	6 cut(s)	22, 25, 135, 141, 144, 163
LweI	GCATC	1 cut(s)	18
MalI	GATC	4 cut(s)	230, 330, 362, 452
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	4 cut(s)	228, 328, 360, 450
MboII	GAAGA	4 cut(s)	227, 230, 236, 490
MflI	RGATCY	1 cut(s)	450
MluCI	AATT	1 cut(s)	462
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	8 cut(s)	55, 66, 96, 99, 113, 210, 291, 327
MseI	TTAA	1 cut(s)	293
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	4, 154
MspI	CCGG	1 cut(s)	217
MwoI	GCNNNNNNNGC	8 cut(s)	10, 19, 28, 50, 154, 157, 491, 500
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	4 cut(s)	228, 328, 360, 450
NlaIII	CATG	6 cut(s)	109, 123, 178, 315, 405, 413
NlaIV	GGNNCC	5 cut(s)	54, 221, 339, 441, 452
NspI	RCATGY	1 cut(s)	315
PagI	TCATGA	2 cut(s)	105, 174
PciI	ACATGT	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	7 cut(s)	12, 15, 33, 150, 153, 156, 159
PpuMI	RGGWCCY	1 cut(s)	338
PscI	ACATGT	1 cut(s)	311
PshBI	ATTAAT	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	338
PspN4I	GGNNCC	5 cut(s)	54, 221, 339, 441, 452
PspPI	GGNCC	1 cut(s)	338
PspPPI	RGGWCCY	1 cut(s)	338
PstI	CTGCAG	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	450
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	7 cut(s)	11, 14, 32, 149, 152, 155, 158
Sau3AI	GATC	4 cut(s)	228, 328, 360, 450
Sau96I	GGNCC	1 cut(s)	338
SetI	ASST	4 cut(s)	150, 156, 169, 505
SfaNI	GCATC	1 cut(s)	18
SfcI	CTRYAG	1 cut(s)	149
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	179
Sse9I	AATT	1 cut(s)	462
SsiI	CCGC	3 cut(s)	4, 32, 376
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	2 cut(s)	95, 287
TaqI	TCGA	1 cut(s)	289
TasI	AATT	1 cut(s)	462
TauI	GCSGC	1 cut(s)	34
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	3 cut(s)	87, 257, 441
TseI	GCWGC	6 cut(s)	10, 13, 148, 151, 154, 157
TspDTI	ATGAA	6 cut(s)	122, 191, 230, 236, 475, 491
TspRI	CASTG	3 cut(s)	87, 257, 441
VpaK11BI	GGWCC	1 cut(s)	338
VspI	ATTAAT	1 cut(s)	293
XceI	RCATGY	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.