Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0009977

Physical Location & Seq

Genomic Coordinates Forward (+)

13322085 .. 13322813

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g14230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGTGAAGACAGATCAGAGGATTATTCAGCTGCCTTCAGAGATGACATCATCGAAAACGACATCGAAGTCTCCATCTTCTTCTTCTTCTTCTTCTACCTCAGCATGCAAGAAGAAGAAGTTTAAGGGAGTGAGGATGAGGAGCTGGGGCTCTTGGGTTTCAGAGATTAGAGCCCCAAACCAAAAAACAAGAATATGGTTAGGTTCATATTCGACAGCTGAGGCTGCGGCAAGAGCCTACGATGCTGCCGTACTGTGCCTCAAGGGCTCCTCAGCCAACCTCAACTTCCCCACCACTGCCTCCTCACATTTTATCCCCCAGGAAATGACCGTCATGTCCCCCAAGTCCATCCAGAGAGTGGCTGCAGCCGCTGCCAATAATAATGCCGCTACCACCACCGCAAACATTGCCTGTCCACCATCACCCCCTCCTCAATCTTCGTCTTCTTCATCTTTGGTCTCGTCTCCGTCTCTGGTCTCGTCGCCATCAACGTCGTCGTCGCCGTCCATTAACCTCATCGATGATGACATGTCATTGCTAATGGGGTCATTTGGGGGGTCCTACATTCCCACTTACTATGATCGATCAAATGATCAATTACCAATGTCTAGCATGGATTCATGGAACAACTTTGACCAAATGTTCGATGGCGCATTGTTGGATCCACAGCCACCTATGATATATGACTTTTATGAGGAAAGTGACATTCGTTTGTGGAGCTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

243

Amino Acids

26.16

Weight (kDa)

7.61

Isoelectric Point (pI)

75.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	40 - 89	1e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21910 AT1G44830 AT1G77640
fragaria_vesca	FvH4_2g26630
malus_domestica	MD08G1166100.v1.1 MD15G1352400.v1.1
prunus_persica	Prupe.1G500900_v2.0.a1
pyrus_communis	pycom08g14230 pycom15g31590
rosa_chinensis	RchiOBHm_Chr6g0295481
rosa_laevigata	RLG00000011797
rosa_multiflora	Rmu_co8378119.1_g000001 Rmu_sc0005712.1_g000029 Rmu_sc0030312.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172440
rosa_rugosa	Rorug06G0251300
rosa_samantha	Rh6AG364500 Rh6BG372800 Rh6CG379100 Rh6DG365500
rosa_wichuraiana	Rw6G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	67, 334
AccB7I	CCANNNNNTGG	1 cut(s)	358
AciI	CCGC	4 cut(s)	227, 369, 387, 399
AclWI	GGATC	2 cut(s)	656, 669
AcuI	CTGAAG	1 cut(s)	21
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	358
AflIII	ACRYGT	1 cut(s)	528
AjnI	CCWGG	1 cut(s)	318
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	4 cut(s)	31, 144, 218, 720
AluI	AGCT	4 cut(s)	31, 144, 218, 720
Alw26I	GTCTC	5 cut(s)	75, 463, 468, 474, 481
AlwI	GGATC	2 cut(s)	656, 669
AlwNI	CAGNNNCTG	1 cut(s)	371
ApeKI	GCWGC	6 cut(s)	31, 224, 245, 362, 365, 371
ArsI	GACNNNNNNTTYG	2 cut(s)	626, 658
AspLEI	GCGC	1 cut(s)	653
AspS9I	GGNCC	1 cut(s)	558
AsuHPI	GGTGA	2 cut(s)	16, 414
AvaII	GGWCC	1 cut(s)	558
BamHI	GGATCC	1 cut(s)	661
BanII	GRGCYC	3 cut(s)	152, 175, 269
BbsI	GAAGAC	2 cut(s)	14, 435
BbvCI	CCTCAGC	3 cut(s)	100, 219, 271
BbvI	GCAGC	6 cut(s)	18, 211, 232, 349, 358, 377
BccI	CCATC	5 cut(s)	82, 356, 427, 493, 641
BceAI	ACGGC	2 cut(s)	233, 487
BciT130I	CCWGG	1 cut(s)	320
BclI	TGATCA	1 cut(s)	592
BcoDI	GTCTC	5 cut(s)	75, 463, 468, 474, 481
BfaI	CTAG	1 cut(s)	609
BfmI	CTRYAG	1 cut(s)	363
BglI	GCCNNNNNGGC	1 cut(s)	264
BisI	GCNGC	9 cut(s)	32, 225, 228, 246, 363, 366, 369, 372, 387
BlsI	GCNGC	9 cut(s)	33, 226, 229, 247, 364, 367, 370, 373, 388
Bme1390I	CCNGG	1 cut(s)	320
Bme18I	GGWCC	1 cut(s)	558
BmgT120I	GGNCC	1 cut(s)	558
BmiI	GGNNCC	3 cut(s)	268, 559, 663
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	1 cut(s)	232
BpiI	GAAGAC	2 cut(s)	14, 435
Bpu10I	CCTNAGC	3 cut(s)	100, 219, 271
BpuEI	CTTGAG	1 cut(s)	245
Bsa29I	ATCGAT	2 cut(s)	519, 583
BsaI	GGTCTC	2 cut(s)	463, 481
BsaJI	CCNNGG	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse3DI	GCAATG	2 cut(s)	405, 533
BseBI	CCWGG	1 cut(s)	320
BseCI	ATCGAT	2 cut(s)	519, 583
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	2 cut(s)	141, 348
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMI	GCAATG	2 cut(s)	405, 533
BseMII	CTCAG	3 cut(s)	114, 210, 285
BseRI	GAGGAG	4 cut(s)	154, 259, 292, 420
BseXI	GCAGC	6 cut(s)	18, 211, 232, 349, 358, 377
BseYI	CCCAGC	1 cut(s)	144
BshVI	ATCGAT	2 cut(s)	519, 583
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	5 cut(s)	75, 463, 468, 474, 481
BsmBI	CGTCTC	2 cut(s)	468, 474
BsmFI	GGGAC	1 cut(s)	322
Bso31I	GGTCTC	2 cut(s)	463, 481
Bsp1286I	GDGCHC	3 cut(s)	152, 175, 269
Bsp143I	GATC	5 cut(s)	13, 580, 584, 592, 661
BspACI	CCGC	4 cut(s)	227, 369, 387, 399
BspCNI	CTCAG	3 cut(s)	113, 211, 284
BspDI	ATCGAT	2 cut(s)	519, 583
BspLI	GGNNCC	3 cut(s)	268, 559, 663
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	2 cut(s)	656, 669
BspTNI	GGTCTC	2 cut(s)	463, 481
BsrDI	GCAATG	2 cut(s)	405, 533
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	5 cut(s)	13, 580, 584, 592, 661
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	2 cut(s)	255, 331
BstAPI	GCANNNNNTGC	2 cut(s)	371, 407
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	3 cut(s)	100, 219, 271
BstF5I	GGATG	2 cut(s)	141, 348
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	5 cut(s)	16, 583, 587, 595, 664
BstMAI	GTCTC	5 cut(s)	75, 463, 468, 474, 481
BstMBI	GATC	5 cut(s)	13, 580, 584, 592, 661
BstMWI	GCNNNNNNNGC	7 cut(s)	224, 233, 242, 264, 368, 371, 407
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	2 cut(s)	108, 532
BstSCI	CCNGG	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	363
BstV1I	GCAGC	6 cut(s)	18, 211, 232, 349, 358, 377
BstV2I	GAAGAC	2 cut(s)	14, 435
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
Bsu15I	ATCGAT	2 cut(s)	519, 583
BsuTUI	ATCGAT	2 cut(s)	519, 583
BtsCI	GGATG	2 cut(s)	141, 348
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	106
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	1 cut(s)	653
Cfr13I	GGNCC	1 cut(s)	558
ClaI	ATCGAT	2 cut(s)	519, 583
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	5 cut(s)	105, 334, 529, 613, 621
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	3 cut(s)	100, 219, 271
DpnI	GATC	5 cut(s)	15, 582, 586, 594, 663
DpnII	GATC	5 cut(s)	13, 580, 584, 592, 661
DrdI	GACNNNNNNGTC	2 cut(s)	67, 334
DseDI	GACNNNNNNGTC	2 cut(s)	67, 334
Eco24I	GRGCYC	3 cut(s)	152, 175, 269
Eco31I	GGTCTC	2 cut(s)	463, 481
Eco47I	GGWCC	1 cut(s)	558
Eco57I	CTGAAG	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	318
EcoT38I	GRGCYC	3 cut(s)	152, 175, 269
Esp3I	CGTCTC	2 cut(s)	468, 474
FaeI	CATG	5 cut(s)	108, 337, 532, 616, 624
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	5 cut(s)	104, 333, 528, 612, 620
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	9 cut(s)	32, 225, 228, 246, 363, 366, 369, 372, 387
FokI	GGATG	2 cut(s)	148, 335
FriOI	GRGCYC	3 cut(s)	152, 175, 269
Fsp4HI	GCNGC	9 cut(s)	32, 225, 228, 246, 363, 366, 369, 372, 387
FspBI	CTAG	1 cut(s)	609
GlaI	GCGC	1 cut(s)	652
GluI	GCNGC	9 cut(s)	32, 225, 228, 246, 363, 366, 369, 372, 387
GsaI	CCCAGC	1 cut(s)	148
HhaI	GCGC	1 cut(s)	653
Hin1II	CATG	5 cut(s)	108, 337, 532, 616, 624
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HinfI	GANTC	1 cut(s)	617
HphI	GGTGA	2 cut(s)	16, 414
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188I	TCNGA	3 cut(s)	18, 40, 163
Hpy188III	TCNNGA	1 cut(s)	352
Hpy8I	GTNNAC	1 cut(s)	416
Hpy99I	CGWCG	4 cut(s)	484, 496, 499, 502
HpyAV	CCTTC	1 cut(s)	45
HpyCH4III	ACNGT	2 cut(s)	255, 331
HpyCH4IV	ACGT	1 cut(s)	491
HpyCH4V	TGCA	2 cut(s)	108, 365
HpyF10VI	GCNNNNNNNGC	7 cut(s)	224, 233, 242, 264, 368, 371, 407
HpyF3I	CTNAG	3 cut(s)	100, 219, 271
HpySE526I	ACGT	1 cut(s)	491
Hsp92II	CATG	5 cut(s)	108, 337, 532, 616, 624
HspAI	GCGC	1 cut(s)	651
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	5 cut(s)	13, 580, 584, 592, 661
LmnI	GCTCC	3 cut(s)	141, 272, 717
LpnPI	CCDG	6 cut(s)	130, 305, 332, 365, 424, 458
Lsp1109I	GCAGC	6 cut(s)	18, 211, 232, 349, 358, 377
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	609
MaeII	ACGT	1 cut(s)	491
MaeIII	GTNAC	1 cut(s)	701
MalI	GATC	5 cut(s)	15, 582, 586, 594, 663
MboI	GATC	5 cut(s)	13, 580, 584, 592, 661
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	3 cut(s)	152, 175, 269
MluCI	AATT	1 cut(s)	596
MmeI	TCCRAC	1 cut(s)	639
MseI	TTAA	2 cut(s)	123, 510
MspA1I	CMGCKG	3 cut(s)	31, 218, 371
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	7 cut(s)	224, 233, 242, 264, 368, 371, 407
NdeII	GATC	5 cut(s)	13, 580, 584, 592, 661
NlaIII	CATG	5 cut(s)	108, 337, 532, 616, 624
NlaIV	GGNNCC	3 cut(s)	268, 559, 663
NmuCI	GTSAC	1 cut(s)	701
NspI	RCATGY	2 cut(s)	108, 532
PaeI	GCATGC	1 cut(s)	108
PciI	ACATGT	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	3 cut(s)	246, 488, 500
PfeI	GAWTC	1 cut(s)	617
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	9 cut(s)	33, 226, 229, 247, 364, 367, 370, 373, 388
PpuMI	RGGWCCY	1 cut(s)	558
PscI	ACATGT	1 cut(s)	528
Psp5II	RGGWCCY	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	3 cut(s)	268, 559, 663
PspPI	GGNCC	1 cut(s)	558
PspPPI	RGGWCCY	1 cut(s)	558
PstI	CTGCAG	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	661
PvuII	CAGCTG	2 cut(s)	31, 218
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SaqAI	TTAA	2 cut(s)	123, 510
SatI	GCNGC	9 cut(s)	32, 225, 228, 246, 363, 366, 369, 372, 387
Sau3AI	GATC	5 cut(s)	13, 580, 584, 592, 661
Sau96I	GGNCC	1 cut(s)	558
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	3 cut(s)	152, 175, 269
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SphI	GCATGC	1 cut(s)	108
Sse9I	AATT	1 cut(s)	596
SsiI	CCGC	4 cut(s)	227, 369, 387, 399
SspMI	CTAG	1 cut(s)	609
StyD4I	CCNGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	255, 331
TaiI	ACGT	1 cut(s)	494
TaqI	TCGA	6 cut(s)	53, 65, 212, 519, 583, 645
TasI	AATT	1 cut(s)	596
TauI	GCSGC	3 cut(s)	230, 371, 389
TfiI	GAWTC	1 cut(s)	617
Tru1I	TTAA	2 cut(s)	123, 510
Tru9I	TTAA	2 cut(s)	123, 510
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	1 cut(s)	701
TseI	GCWGC	6 cut(s)	31, 224, 245, 362, 365, 371
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	3 cut(s)	195, 438, 609
TspGWI	ACGGA	1 cut(s)	456
TspRI	CASTG	1 cut(s)	301
Van91I	CCANNNNNTGG	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	558
XceI	RCATGY	2 cut(s)	108, 532
XcmI	CCANNNNNNNNNTGG	2 cut(s)	355, 644
XspI	CTAG	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.