Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009977

Physical Location & Seq

Genomic Coordinates Reverse (-)

60199986 .. 60200186

Gene Structure 201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG372800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGTCCTCGCTGATGGGCTCATTTGGGTCCTATACTCCTACTACTTATGATCATAATCCACAGGCGGACTATGATGTACCAATCTGCACCATGGAATCATGGAACAACTTTGATGATTTATTCACTGGTGCCTTGTTGGATCCACCTATGAATTATGACTTCTATGAAGAAAGCGATATTCGCTTGTGGAGCTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

66

Amino Acids

7.66

Weight (kDa)

4.05

Isoelectric Point (pI)

59.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21910 AT1G44830 AT1G77640
fragaria_vesca	FvH4_2g26630
malus_domestica	MD08G1166100.v1.1 MD15G1352400.v1.1
prunus_persica	Prupe.1G500900_v2.0.a1
pyrus_communis	pycom08g14230 pycom15g31590
rosa_chinensis	RchiOBHm_Chr6g0295481
rosa_laevigata	RLG00000011797
rosa_multiflora	Rmu_co8378119.1_g000001 Rmu_sc0005712.1_g000029 Rmu_sc0030312.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172440
rosa_rugosa	Rorug06G0251300
rosa_samantha	Rh6AG364500 Rh6BG372800 Rh6CG379100 Rh6DG365500
rosa_wichuraiana	Rw6G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	128
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	2 cut(s)	134, 147
AfaI	GTAC	1 cut(s)	78
AluBI	AGCT	1 cut(s)	192
AluI	AGCT	1 cut(s)	192
AlwI	GGATC	2 cut(s)	134, 147
AspS9I	GGNCC	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	27
BamHI	GGATCC	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	20
BccI	CCATC	1 cut(s)	7
BclI	TGATCA	1 cut(s)	49
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	3 cut(s)	28, 130, 141
BsaBI	GATNNNNATC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	130
Bse8I	GATNNNNATC	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	90
BseJI	GATNNNNATC	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	130
BsgI	GTGCAG	1 cut(s)	70
BshNI	GGYRCC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	49, 139
Bsp19I	CCATGG	1 cut(s)	90
BspACI	CCGC	1 cut(s)	65
BspLI	GGNNCC	3 cut(s)	28, 130, 141
BspPI	GGATC	2 cut(s)	134, 147
BspT107I	GGYRCC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	49, 139
BssT1I	CCWWGG	1 cut(s)	90
BstDSI	CCRYGG	1 cut(s)	90
BstKTI	GATC	2 cut(s)	52, 142
BstMBI	GATC	2 cut(s)	49, 139
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 189
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BtgI	CCRYGG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	2 cut(s)	91, 99
CviJI	RGCY	2 cut(s)	18, 192
CviKI_1	RGCY	2 cut(s)	18, 192
CviQI	GTAC	1 cut(s)	77
DpnI	GATC	2 cut(s)	51, 141
DpnII	GATC	2 cut(s)	49, 139
EciI	GGCGGA	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	94, 102
FaiI	YATR	9 cut(s)	33, 48, 54, 72, 92, 100, 149, 156, 165
FatI	CATG	2 cut(s)	90, 98
FbaI	TGATCA	1 cut(s)	49
FriOI	GRGCYC	1 cut(s)	20
Hin1II	CATG	2 cut(s)	94, 102
HinfI	GANTC	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 189
Hsp92II	CATG	2 cut(s)	94, 102
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	49, 139
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	2 cut(s)	47, 111
MalI	GATC	2 cut(s)	51, 141
MboI	GATC	2 cut(s)	49, 139
MboII	GAAGA	1 cut(s)	179
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	1 cut(s)	16
MwoI	GCNNNNNNNGC	2 cut(s)	180, 189
NcoI	CCATGG	1 cut(s)	90
NdeII	GATC	2 cut(s)	49, 139
NlaIII	CATG	2 cut(s)	94, 102
NlaIV	GGNNCC	3 cut(s)	28, 130, 141
PfeI	GAWTC	1 cut(s)	95
PpuMI	RGGWCCY	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	27
PspN4I	GGNNCC	3 cut(s)	28, 130, 141
PspPI	GGNCC	1 cut(s)	27
PspPPI	RGGWCCY	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
Sau3AI	GATC	2 cut(s)	49, 139
Sau96I	GGNCC	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	2 cut(s)	148, 194
SgeI	CNNG	7 cut(s)	19, 74, 103, 111, 138, 145, 196
SinI	GGWCC	1 cut(s)	27
Sse9I	AATT	1 cut(s)	151
SsiI	CCGC	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	90
TasI	AATT	1 cut(s)	151
TfiI	GAWTC	1 cut(s)	95
TscAI	CASTG	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	164, 180
TspRI	CASTG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.