Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005712.1

Orthogroup ID

OG0009977

Physical Location & Seq

Genomic Coordinates Forward (+)

188300 .. 188692

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005712.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgtccccgaagtccattcagagagtagctgcagctgctgctaatagcttcaatcatgaaaatgccaccaccatcacagcctcatctccaccatcaccggctcctaatgatctctcttcttcatcttcatcactggtctcatccccatcaatgtcatcatcctcaccgtcgattaatctcgttgacgatgacatgtcctcgctgatgggatcatttgggtcctatactcctactacttatgatcataatccacaggcggactatgatgtaccaatctgcaccatggaatcatggaacaactttgatgatttattcactggtgccttgttggatccaccaatgaattatgacttctatgaagaaagcgatattcgcttgtggagcttctgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

130

Amino Acids

14.05

Weight (kDa)

4.05

Isoelectric Point (pI)

81.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21910 AT1G44830 AT1G77640
fragaria_vesca	FvH4_2g26630
malus_domestica	MD08G1166100.v1.1 MD15G1352400.v1.1
prunus_persica	Prupe.1G500900_v2.0.a1
pyrus_communis	pycom08g14230 pycom15g31590
rosa_chinensis	RchiOBHm_Chr6g0295481
rosa_laevigata	RLG00000011797
rosa_multiflora	Rmu_co8378119.1_g000001 Rmu_sc0005712.1_g000029 Rmu_sc0030312.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172440
rosa_rugosa	Rorug06G0251300
rosa_samantha	Rh6AG364500 Rh6BG372800 Rh6CG379100 Rh6DG365500
rosa_wichuraiana	Rw6G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	320
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	3 cut(s)	217, 326, 339
AfaI	GTAC	1 cut(s)	270
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	52
AluBI	AGCT	4 cut(s)	29, 35, 48, 384
AluI	AGCT	4 cut(s)	29, 35, 48, 384
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	3 cut(s)	217, 326, 339
AlwNI	CAGNNNCTG	1 cut(s)	38
ApeKI	GCWGC	4 cut(s)	29, 32, 35, 38
AseI	ATTAAT	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	219
AsuHPI	GGTGA	2 cut(s)	87, 156
AvaII	GGWCC	1 cut(s)	219
BamHI	GGATCC	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	320
BbvI	GCAGC	4 cut(s)	16, 22, 25, 44
BccI	CCATC	4 cut(s)	80, 100, 154, 199
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	142
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	4 cut(s)	30, 33, 36, 39
BlsI	GCNGC	4 cut(s)	31, 34, 37, 40
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	4 cut(s)	102, 220, 322, 333
BsaBI	GATNNNNATC	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	282
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	2 cut(s)	138, 322
Bse8I	GATNNNNATC	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	2 cut(s)	140, 158
BseJI	GATNNNNATC	1 cut(s)	246
BseNI	ACTGG	2 cut(s)	138, 322
BseXI	GCAGC	4 cut(s)	16, 22, 25, 44
BsgI	GTGCAG	1 cut(s)	262
BshNI	GGYRCC	1 cut(s)	320
BsiSI	CCGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	142
Bso31I	GGTCTC	1 cut(s)	142
Bsp143I	GATC	4 cut(s)	109, 209, 241, 331
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	1 cut(s)	257
BspHI	TCATGA	1 cut(s)	55
BspLI	GGNNCC	4 cut(s)	102, 220, 322, 333
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	3 cut(s)	217, 326, 339
BspT107I	GGYRCC	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	138, 322
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	4 cut(s)	109, 209, 241, 331
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	168
Bst6I	CTCTTC	1 cut(s)	121
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	2 cut(s)	140, 158
BstKTI	GATC	4 cut(s)	112, 212, 244, 334
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	4 cut(s)	109, 209, 241, 331
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 38, 372, 381
BstNSI	RCATGY	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	4 cut(s)	16, 22, 25, 44
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	140, 158
BtsIMutI	CAGTG	2 cut(s)	131, 315
CaiI	CAGNNNCTG	1 cut(s)	38
CciI	TCATGA	1 cut(s)	55
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	4 cut(s)	56, 193, 283, 291
CviJI	RGCY	6 cut(s)	29, 35, 48, 80, 101, 384
CviKI_1	RGCY	6 cut(s)	29, 35, 48, 80, 101, 384
CviQI	GTAC	1 cut(s)	269
DpnI	GATC	4 cut(s)	111, 211, 243, 333
DpnII	GATC	4 cut(s)	109, 209, 241, 331
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	272
Eco130I	CCWWGG	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	4 cut(s)	59, 196, 286, 294
FatI	CATG	4 cut(s)	55, 192, 282, 290
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	4 cut(s)	30, 33, 36, 39
FokI	GGATG	2 cut(s)	127, 145
Fsp4HI	GCNGC	4 cut(s)	30, 33, 36, 39
GluI	GCNGC	4 cut(s)	30, 33, 36, 39
HapII	CCGG	1 cut(s)	98
Hin1II	CATG	4 cut(s)	59, 196, 286, 294
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	287
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	2 cut(s)	87, 156
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	32, 279
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 38, 372, 381
Hsp92II	CATG	4 cut(s)	59, 196, 286, 294
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	109, 209, 241, 331
LmnI	GCTCC	2 cut(s)	106, 381
LpnPI	CCDG	4 cut(s)	111, 119, 239, 303
Lsp1109I	GCAGC	4 cut(s)	16, 22, 25, 44
MalI	GATC	4 cut(s)	111, 211, 243, 333
MboI	GATC	4 cut(s)	109, 209, 241, 331
MboII	GAAGA	4 cut(s)	108, 111, 117, 371
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	1 cut(s)	343
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	3 cut(s)	91, 172, 208
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	4 cut(s)	35, 38, 372, 381
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	4 cut(s)	109, 209, 241, 331
NlaIII	CATG	4 cut(s)	59, 196, 286, 294
NlaIV	GGNNCC	4 cut(s)	102, 220, 322, 333
NspI	RCATGY	1 cut(s)	196
PagI	TCATGA	1 cut(s)	55
PciI	ACATGT	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	4 cut(s)	31, 34, 37, 40
PpuMI	RGGWCCY	1 cut(s)	219
PscI	ACATGT	1 cut(s)	192
PshBI	ATTAAT	1 cut(s)	174
Psp5II	RGGWCCY	1 cut(s)	219
PspN4I	GGNNCC	4 cut(s)	102, 220, 322, 333
PspPI	GGNCC	1 cut(s)	219
PspPPI	RGGWCCY	1 cut(s)	219
PstI	CTGCAG	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	4 cut(s)	30, 33, 36, 39
Sau3AI	GATC	4 cut(s)	109, 209, 241, 331
Sau96I	GGNCC	1 cut(s)	219
SetI	ASST	4 cut(s)	31, 37, 50, 386
SfcI	CTRYAG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	60
Sse9I	AATT	1 cut(s)	343
SsiI	CCGC	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	170
TasI	AATT	1 cut(s)	343
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	2 cut(s)	138, 322
TseI	GCWGC	4 cut(s)	29, 32, 35, 38
TspDTI	ATGAA	5 cut(s)	72, 111, 117, 356, 372
TspRI	CASTG	2 cut(s)	138, 322
VpaK11BI	GGWCC	1 cut(s)	219
VspI	ATTAAT	1 cut(s)	174
XceI	RCATGY	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.