Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009977

Physical Location & Seq

Genomic Coordinates Reverse (-)

56560878 .. 56562240

Gene Structure 1363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG379100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGTGAAGACAGAGCAGAGGATTCAGCTGGCTTCTGAGACCTCATTGAAACCATTAGTGCCTTCGTCGAAAACAACATCGAGGGACAAGAAGAAGAAGTACAAGGGTGTGAGGATGAGGAGCTGGGGCTCATGGGTTTCGGAGATTAGAGCCCCAAACCAGAAGACAAGAATATGGCTAGGCTCATACTCAACAGCGGAAGCAGCAGCCAGAGCCTATGATGCCGCTCTCCTGTGCCTCAAAGGCTCCTCAGCCAATCTCAACTTCCCAATCAGTGCCTCATCACAGTTTGTTCCTCATGAAAATACCATCATGTCCCCTAAGTCCATTCAGAGAGTAGCTGCAGCTGCTGCTAATAGCTTCAATCATGAAAATGCCACCACCATCACAGCCTCATCTCCACCATCACCGCCTCCTAATGATCTCTCTTCTTCATCTTCATCACTGGTATCATCCCCATCAATGTCATCATCCTCACCGTCGATTAATCTCGTCGACGATGACATGTCCTCGCTGATGGGCTCATTTGGGTCCTATACTCCTACTACTTATGATCATAATCCACAGGCGGACTATGATGTACCAATCTGCACCATGGAATCATGGAACAACTTTGATGATTTATTCACTGGTGCCTTGTTGGATCCACCTATGAATTATGACTTCTATGAAGAAAGCGATATTCGCTTGTGGAGCTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

234

Amino Acids

25.62

Weight (kDa)

5.62

Isoelectric Point (pI)

61.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	33 - 82	3e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21910 AT1G44830 AT1G77640
fragaria_vesca	FvH4_2g26630
malus_domestica	MD08G1166100.v1.1 MD15G1352400.v1.1
prunus_persica	Prupe.1G500900_v2.0.a1
pyrus_communis	pycom08g14230 pycom15g31590
rosa_chinensis	RchiOBHm_Chr6g0295481
rosa_laevigata	RLG00000011797
rosa_multiflora	Rmu_co8378119.1_g000001 Rmu_sc0005712.1_g000029 Rmu_sc0030312.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172440
rosa_rugosa	Rorug06G0251300
rosa_samantha	Rh6AG364500 Rh6BG372800 Rh6CG379100 Rh6DG365500
rosa_wichuraiana	Rw6G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	632
AccBSI	CCGCTC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	495
AciI	CCGC	4 cut(s)	197, 225, 410, 569
AclWI	GGATC	2 cut(s)	638, 651
AfaI	GTAC	2 cut(s)	101, 582
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	2 cut(s)	49, 364
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AluBI	AGCT	6 cut(s)	28, 123, 341, 347, 360, 696
AluI	AGCT	6 cut(s)	28, 123, 341, 347, 360, 696
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	2 cut(s)	638, 651
AlwNI	CAGNNNCTG	1 cut(s)	350
ApeKI	GCWGC	6 cut(s)	203, 206, 341, 344, 347, 350
AseI	ATTAAT	1 cut(s)	486
AspS9I	GGNCC	1 cut(s)	531
AsuHPI	GGTGA	3 cut(s)	16, 399, 468
AvaII	GGWCC	1 cut(s)	531
BamHI	GGATCC	1 cut(s)	643
BanI	GGYRCC	1 cut(s)	632
BanII	GRGCYC	3 cut(s)	131, 154, 524
BarI	GAAGNNNNNNTAC	2 cut(s)	83, 115
BbsI	GAAGAC	2 cut(s)	14, 170
BbvCI	CCTCAGC	1 cut(s)	250
BbvI	GCAGC	6 cut(s)	215, 218, 328, 334, 337, 356
BccI	CCATC	5 cut(s)	317, 392, 412, 466, 511
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	342
BglI	GCCNNNNNGGC	1 cut(s)	243
BisI	GCNGC	7 cut(s)	204, 207, 225, 342, 345, 348, 351
BlsI	GCNGC	7 cut(s)	205, 208, 226, 343, 346, 349, 352
Bme18I	GGWCC	1 cut(s)	531
BmgT120I	GGNCC	1 cut(s)	531
BmiI	GGNNCC	4 cut(s)	247, 532, 634, 645
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	2 cut(s)	14, 170
Bpu10I	CCTNAGC	1 cut(s)	250
BsaBI	GATNNNNATC	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	594
Bse1I	ACTGG	2 cut(s)	450, 634
Bse8I	GATNNNNATC	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	594
BseGI	GGATG	3 cut(s)	120, 452, 470
BseJI	GATNNNNATC	1 cut(s)	558
BseMII	CTCAG	2 cut(s)	27, 264
BseNI	ACTGG	2 cut(s)	450, 634
BseRI	GAGGAG	2 cut(s)	133, 238
BseXI	GCAGC	6 cut(s)	215, 218, 328, 334, 337, 356
BseYI	CCCAGC	1 cut(s)	123
BsgI	GTGCAG	1 cut(s)	574
BshNI	GGYRCC	1 cut(s)	632
BslFI	GGGAC	2 cut(s)	98, 301
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	98, 301
Bso31I	GGTCTC	1 cut(s)	32
Bsp1286I	GDGCHC	3 cut(s)	131, 154, 524
Bsp143I	GATC	3 cut(s)	421, 553, 643
Bsp19I	CCATGG	1 cut(s)	594
BspACI	CCGC	4 cut(s)	197, 225, 410, 569
BspCNI	CTCAG	2 cut(s)	28, 263
BspHI	TCATGA	2 cut(s)	298, 367
BspLI	GGNNCC	4 cut(s)	247, 532, 634, 645
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	2 cut(s)	638, 651
BspT107I	GGYRCC	1 cut(s)	632
BspTNI	GGTCTC	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	450, 634
BssECI	CCNNGG	1 cut(s)	594
BssMI	GATC	3 cut(s)	421, 553, 643
BssT1I	CCWWGG	1 cut(s)	594
Bst4CI	ACNGT	2 cut(s)	288, 480
Bst6I	CTCTTC	1 cut(s)	433
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	3 cut(s)	36, 250, 321
BstDSI	CCRYGG	1 cut(s)	594
BstF5I	GGATG	3 cut(s)	120, 452, 470
BstKTI	GATC	3 cut(s)	424, 556, 646
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	3 cut(s)	421, 553, 643
BstMWI	GCNNNNNNNGC	8 cut(s)	203, 212, 221, 243, 347, 350, 684, 693
BstNSI	RCATGY	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	6 cut(s)	215, 218, 328, 334, 337, 356
BstV2I	GAAGAC	2 cut(s)	14, 170
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
BtgI	CCRYGG	1 cut(s)	594
BtsCI	GGATG	3 cut(s)	120, 452, 470
BtsIMutI	CAGTG	3 cut(s)	280, 443, 627
Cac8I	GCNNGC	1 cut(s)	30
CaiI	CAGNNNCTG	1 cut(s)	350
CciI	TCATGA	2 cut(s)	298, 367
Cfr13I	GGNCC	1 cut(s)	531
Csp6I	GTAC	2 cut(s)	100, 581
CviAII	CATG	7 cut(s)	132, 299, 313, 368, 505, 595, 603
CviQI	GTAC	2 cut(s)	100, 581
DdeI	CTNAG	3 cut(s)	36, 250, 321
DpnI	GATC	3 cut(s)	423, 555, 645
DpnII	GATC	3 cut(s)	421, 553, 643
Eam1104I	CTCTTC	1 cut(s)	433
EarI	CTCTTC	1 cut(s)	433
EciI	GGCGGA	1 cut(s)	584
Eco130I	CCWWGG	1 cut(s)	594
Eco24I	GRGCYC	3 cut(s)	131, 154, 524
Eco31I	GGTCTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	531
EcoT14I	CCWWGG	1 cut(s)	594
EcoT38I	GRGCYC	3 cut(s)	131, 154, 524
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	7 cut(s)	135, 302, 316, 371, 508, 598, 606
FaqI	GGGAC	2 cut(s)	98, 301
FatI	CATG	7 cut(s)	131, 298, 312, 367, 504, 594, 602
FbaI	TGATCA	1 cut(s)	553
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	7 cut(s)	204, 207, 225, 342, 345, 348, 351
FokI	GGATG	3 cut(s)	127, 439, 457
FriOI	GRGCYC	3 cut(s)	131, 154, 524
Fsp4HI	GCNGC	7 cut(s)	204, 207, 225, 342, 345, 348, 351
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	7 cut(s)	204, 207, 225, 342, 345, 348, 351
GsaI	CCCAGC	1 cut(s)	127
Hin1II	CATG	7 cut(s)	135, 302, 316, 371, 508, 598, 606
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	2 cut(s)	22, 599
HphI	GGTGA	3 cut(s)	16, 399, 468
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	3 cut(s)	37, 142, 333
Hpy188III	TCNNGA	2 cut(s)	299, 368
Hpy8I	GTNNAC	1 cut(s)	496
Hpy99I	CGWCG	4 cut(s)	70, 484, 497, 500
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	2 cut(s)	288, 480
HpyCH4V	TGCA	2 cut(s)	344, 591
HpyF10VI	GCNNNNNNNGC	8 cut(s)	203, 212, 221, 243, 347, 350, 684, 693
HpyF3I	CTNAG	3 cut(s)	36, 250, 321
Hsp92II	CATG	7 cut(s)	135, 302, 316, 371, 508, 598, 606
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	3 cut(s)	421, 553, 643
LmnI	GCTCC	3 cut(s)	120, 251, 693
LpnPI	CCDG	8 cut(s)	14, 109, 173, 223, 245, 431, 551, 615
Lsp1109I	GCAGC	6 cut(s)	215, 218, 328, 334, 337, 356
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	179
MalI	GATC	3 cut(s)	423, 555, 645
MbiI	CCGCTC	1 cut(s)	227
MboI	GATC	3 cut(s)	421, 553, 643
MboII	GAAGA	8 cut(s)	19, 103, 106, 175, 420, 423, 429, 683
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	3 cut(s)	131, 154, 524
MluCI	AATT	1 cut(s)	655
MmeI	TCCRAC	1 cut(s)	621
MseI	TTAA	1 cut(s)	486
MslI	CAYNNNNRTG	1 cut(s)	372
MspA1I	CMGCKG	3 cut(s)	28, 197, 347
MwoI	GCNNNNNNNGC	8 cut(s)	203, 212, 221, 243, 347, 350, 684, 693
NcoI	CCATGG	1 cut(s)	594
NdeII	GATC	3 cut(s)	421, 553, 643
NlaIII	CATG	7 cut(s)	135, 302, 316, 371, 508, 598, 606
NlaIV	GGNNCC	4 cut(s)	247, 532, 634, 645
NspI	RCATGY	1 cut(s)	508
PagI	TCATGA	2 cut(s)	298, 367
PciI	ACATGT	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	22, 599
PkrI	GCNGC	7 cut(s)	205, 208, 226, 343, 346, 349, 352
PpuMI	RGGWCCY	1 cut(s)	531
PscI	ACATGT	1 cut(s)	504
PshBI	ATTAAT	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	531
PspFI	CCCAGC	1 cut(s)	123
PspN4I	GGNNCC	4 cut(s)	247, 532, 634, 645
PspPI	GGNCC	1 cut(s)	531
PspPPI	RGGWCCY	1 cut(s)	531
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	643
PvuII	CAGCTG	2 cut(s)	28, 347
RsaI	GTAC	2 cut(s)	101, 582
RsaNI	GTAC	2 cut(s)	100, 581
RseI	CAYNNNNRTG	1 cut(s)	372
SalI	GTCGAC	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	7 cut(s)	204, 207, 225, 342, 345, 348, 351
Sau3AI	GATC	3 cut(s)	421, 553, 643
Sau96I	GGNCC	1 cut(s)	531
SduI	GDGCHC	3 cut(s)	131, 154, 524
SetI	ASST	8 cut(s)	30, 44, 125, 343, 349, 362, 652, 698
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	342
SgrDI	CGTCGACG	1 cut(s)	494
SinI	GGWCC	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	372
Sse9I	AATT	1 cut(s)	655
SsiI	CCGC	4 cut(s)	197, 225, 410, 569
SspMI	CTAG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	2 cut(s)	288, 480
TaqI	TCGA	4 cut(s)	68, 80, 482, 495
TasI	AATT	1 cut(s)	655
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	2 cut(s)	22, 599
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	3 cut(s)	280, 450, 634
TseI	GCWGC	6 cut(s)	203, 206, 341, 344, 347, 350
TspDTI	ATGAA	6 cut(s)	315, 384, 423, 429, 668, 684
TspRI	CASTG	3 cut(s)	280, 450, 634
VpaK11BI	GGWCC	1 cut(s)	531
VspI	ATTAAT	1 cut(s)	486
XceI	RCATGY	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	495
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.