Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009977

Physical Location & Seq

Genomic Coordinates Forward (+)

30065236 .. 30065952

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g31590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGTGAAGTCGGAGCGGAGGATTCTTCAGCTGCCTTCAGTGATGACATCGTCGAAAACGACATCGACATCTTCTTCTTCTTCTTCTTCTTCTTCCTCAGCATGCAAGAAGAAGTTTAAGGGAGTGAGGATGAGGAGCTGGGGCTCTTGGGTTTCAGAGATTAGGGCTCCAAACCAAAAAACAAGAATATGGTTAGGCTCATATTCTACTGCTGAGGCTGCAGCGAGAGCCTATGATGCTGCCCTACTGTGCCTCAAGGGCTCCTCAGCCAACCTCAACTTCCCCACCACTGCCTCCTCACATTTTATCCCCCAAGAAATGACAGTCATATCCCCCAAATCCATCCAAAGGGTGGCTGCGGCCGCTGCCAATAGTTTTGTTCTTGATAATAATGCCGCTACCACCACCGCAAACATTGCCTTACCACCATCGGCCCCTCCTCAATCTACTTCTTCCTCATCTTTGGTCTCGTCTCCCTCGATGTCGTCCTCGCCGTCCAGTAACCTCATCGACGACGATTTGTCATCGCTGATGGGTGCATTTGGGGGGTCCTACACTCCCACTTACTATGATCAATCAAACGATCAATTACCAATGTTTAGCATGGATTCATGGAACAACTTTGACCAAATGTTCGATGGCGCCTGGGATCCACATCCACATATGATGTATGACTTATACGAGGAAAGTGACATTCGCTTGTGGAGCTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

239

Amino Acids

25.83

Weight (kDa)

6.28

Isoelectric Point (pI)

66.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	38 - 87	6.5e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21910 AT1G44830 AT1G77640
fragaria_vesca	FvH4_2g26630
malus_domestica	MD08G1166100.v1.1 MD15G1352400.v1.1
prunus_persica	Prupe.1G500900_v2.0.a1
pyrus_communis	pycom08g14230 pycom15g31590
rosa_chinensis	RchiOBHm_Chr6g0295481
rosa_laevigata	RLG00000011797
rosa_multiflora	Rmu_co8378119.1_g000001 Rmu_sc0005712.1_g000029 Rmu_sc0030312.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172440
rosa_rugosa	Rorug06G0251300
rosa_samantha	Rh6AG364500 Rh6BG372800 Rh6CG379100 Rh6DG365500
rosa_wichuraiana	Rw6G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	641
AccB7I	CCANNNNNTGG	1 cut(s)	352
AccBSI	CCGCTC	1 cut(s)	16
AciI	CCGC	5 cut(s)	16, 359, 363, 396, 408
AclWI	GGATC	2 cut(s)	644, 657
AcoI	YGGCCR	1 cut(s)	360
AcuI	CTGAAG	2 cut(s)	11, 21
AcyI	GRCGYC	1 cut(s)	642
AfiI	CCNNNNNNNGG	2 cut(s)	348, 352
AhdI	GACNNNNNGTC	1 cut(s)	520
AjnI	CCWGG	1 cut(s)	644
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	3 cut(s)	31, 138, 708
AluI	AGCT	3 cut(s)	31, 138, 708
Alw26I	GTCTC	2 cut(s)	472, 477
AlwI	GGATC	2 cut(s)	644, 657
AoxI	GGCC	2 cut(s)	360, 432
ApeKI	GCWGC	6 cut(s)	31, 218, 221, 239, 356, 365
ArsI	GACNNNNNNTTYG	2 cut(s)	617, 649
AspLEI	GCGC	1 cut(s)	644
AspS9I	GGNCC	2 cut(s)	433, 549
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	549
BamHI	GGATCC	1 cut(s)	649
BanI	GGYRCC	1 cut(s)	641
BanII	GRGCYC	3 cut(s)	146, 169, 263
BbvCI	CCTCAGC	3 cut(s)	97, 213, 265
BbvI	GCAGC	6 cut(s)	18, 205, 226, 233, 343, 352
BccI	CCATC	4 cut(s)	350, 436, 526, 632
BceAI	ACGGC	1 cut(s)	478
BciT130I	CCWGG	1 cut(s)	646
BclI	TGATCA	1 cut(s)	571
BcoDI	GTCTC	2 cut(s)	472, 477
BfmI	CTRYAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	645
BglI	GCCNNNNNGGC	1 cut(s)	258
BisI	GCNGC	9 cut(s)	32, 219, 222, 240, 357, 360, 363, 366, 396
BlsI	GCNGC	9 cut(s)	33, 220, 223, 241, 358, 361, 364, 367, 397
Bme1390I	CCNGG	1 cut(s)	646
Bme18I	GGWCC	1 cut(s)	549
BmeRI	GACNNNNNGTC	1 cut(s)	520
BmgT120I	GGNCC	2 cut(s)	433, 549
BmiI	GGNNCC	6 cut(s)	168, 262, 435, 550, 643, 651
BmrFI	CCNGG	1 cut(s)	646
BmsI	GCATC	1 cut(s)	226
Bpu10I	CCTNAGC	3 cut(s)	97, 213, 265
BpuEI	CTTGAG	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	654
BsaHI	GRCGYC	1 cut(s)	642
BsaI	GGTCTC	1 cut(s)	472
BsaJI	CCNNGG	1 cut(s)	645
Bsc4I	CCNNNNNNNGG	2 cut(s)	348, 352
Bse1I	ACTGG	1 cut(s)	498
Bse3DI	GCAATG	1 cut(s)	414
Bse8I	GATNNNNATC	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	646
BseDI	CCNNGG	1 cut(s)	645
BseGI	GGATG	3 cut(s)	135, 342, 655
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	2 cut(s)	348, 352
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	3 cut(s)	111, 204, 279
BseNI	ACTGG	1 cut(s)	498
BseRI	GAGGAG	4 cut(s)	148, 253, 286, 429
BseX3I	CGGCCG	1 cut(s)	360
BseXI	GCAGC	6 cut(s)	18, 205, 226, 233, 343, 352
BseYI	CCCAGC	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	2 cut(s)	362, 434
BshNI	GGYRCC	1 cut(s)	641
BsiEI	CGRYCG	1 cut(s)	363
BslI	CCNNNNNNNGG	2 cut(s)	348, 352
BsmAI	GTCTC	2 cut(s)	472, 477
BsmBI	CGTCTC	1 cut(s)	477
BsnI	GGCC	2 cut(s)	362, 434
Bso31I	GGTCTC	1 cut(s)	472
Bsp1286I	GDGCHC	3 cut(s)	146, 169, 263
Bsp143I	GATC	3 cut(s)	571, 583, 649
BspACI	CCGC	5 cut(s)	16, 359, 363, 396, 408
BspANI	GGCC	2 cut(s)	362, 434
BspCNI	CTCAG	3 cut(s)	110, 205, 278
BspLI	GGNNCC	6 cut(s)	168, 262, 435, 550, 643, 651
BspMAI	CTGCAG	1 cut(s)	223
BspPI	GGATC	2 cut(s)	644, 657
BspT107I	GGYRCC	1 cut(s)	641
BspTNI	GGTCTC	1 cut(s)	472
BsrBI	CCGCTC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	498
BssECI	CCNNGG	1 cut(s)	645
BssMI	GATC	3 cut(s)	571, 583, 649
BssNI	GRCGYC	1 cut(s)	642
Bst2UI	CCWGG	1 cut(s)	646
Bst4CI	ACNGT	2 cut(s)	249, 325
BstACI	GRCGYC	1 cut(s)	642
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	3 cut(s)	97, 213, 265
BstF5I	GGATG	3 cut(s)	135, 342, 655
BstH2I	RGCGCY	1 cut(s)	645
BstHHI	GCGC	1 cut(s)	644
BstKTI	GATC	3 cut(s)	574, 586, 652
BstMAI	GTCTC	2 cut(s)	472, 477
BstMBI	GATC	3 cut(s)	571, 583, 649
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	8 cut(s)	218, 227, 236, 258, 362, 365, 416, 705
BstNI	CCWGG	1 cut(s)	646
BstNSI	RCATGY	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	644
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	6 cut(s)	18, 205, 226, 233, 343, 352
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BstZI	CGGCCG	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	362, 434
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	3 cut(s)	135, 342, 655
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	45, 288
Cac8I	GCNNGC	1 cut(s)	103
CciNI	GCGGCCGC	1 cut(s)	360
CfoI	GCGC	1 cut(s)	644
Cfr13I	GGNCC	2 cut(s)	433, 549
CviAII	CATG	3 cut(s)	102, 604, 612
DdeI	CTNAG	3 cut(s)	97, 213, 265
DinI	GGCGCC	1 cut(s)	643
DpnI	GATC	3 cut(s)	573, 585, 651
DpnII	GATC	3 cut(s)	571, 583, 649
DriI	GACNNNNNGTC	1 cut(s)	520
EaeI	YGGCCR	1 cut(s)	360
EagI	CGGCCG	1 cut(s)	360
Eam1105I	GACNNNNNGTC	1 cut(s)	520
EclXI	CGGCCG	1 cut(s)	360
Eco24I	GRGCYC	3 cut(s)	146, 169, 263
Eco31I	GGTCTC	1 cut(s)	472
Eco47I	GGWCC	1 cut(s)	549
Eco52I	CGGCCG	1 cut(s)	360
Eco57I	CTGAAG	2 cut(s)	11, 21
EcoO109I	RGGNCCY	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	644
EcoT38I	GRGCYC	3 cut(s)	146, 169, 263
EgeI	GGCGCC	1 cut(s)	643
EheI	GGCGCC	1 cut(s)	643
Esp3I	CGTCTC	1 cut(s)	477
FaeI	CATG	3 cut(s)	105, 607, 615
FatI	CATG	3 cut(s)	101, 603, 611
FauNDI	CATATG	1 cut(s)	663
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	9 cut(s)	32, 219, 222, 240, 357, 360, 363, 366, 396
FokI	GGATG	3 cut(s)	142, 329, 642
FriOI	GRGCYC	3 cut(s)	146, 169, 263
Fsp4HI	GCNGC	9 cut(s)	32, 219, 222, 240, 357, 360, 363, 366, 396
GlaI	GCGC	1 cut(s)	643
GluI	GCNGC	9 cut(s)	32, 219, 222, 240, 357, 360, 363, 366, 396
GsaI	CCCAGC	1 cut(s)	142
HaeII	RGCGCY	1 cut(s)	645
HaeIII	GGCC	2 cut(s)	362, 434
HhaI	GCGC	1 cut(s)	644
Hin1I	GRCGYC	1 cut(s)	642
Hin1II	CATG	3 cut(s)	105, 607, 615
Hin6I	GCGC	1 cut(s)	642
HinP1I	GCGC	1 cut(s)	642
HinfI	GANTC	2 cut(s)	22, 608
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	13, 157
Hpy188III	TCNNGA	1 cut(s)	383
Hpy99I	CGWCG	3 cut(s)	55, 515, 518
HpyAV	CCTTC	1 cut(s)	45
HpyCH4III	ACNGT	2 cut(s)	249, 325
HpyCH4V	TGCA	3 cut(s)	105, 221, 539
HpyF10VI	GCNNNNNNNGC	8 cut(s)	218, 227, 236, 258, 362, 365, 416, 705
HpyF3I	CTNAG	3 cut(s)	97, 213, 265
Hsp92I	GRCGYC	1 cut(s)	642
Hsp92II	CATG	3 cut(s)	105, 607, 615
HspAI	GCGC	1 cut(s)	642
KasI	GGCGCC	1 cut(s)	641
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	3 cut(s)	571, 583, 649
LmnI	GCTCC	5 cut(s)	13, 135, 172, 266, 705
LpnPI	CCDG	4 cut(s)	124, 511, 631, 658
Lsp1109I	GCAGC	6 cut(s)	18, 205, 226, 233, 343, 352
LweI	GCATC	1 cut(s)	226
MaeIII	GTNAC	2 cut(s)	500, 689
MalI	GATC	3 cut(s)	573, 585, 651
MbiI	CCGCTC	1 cut(s)	16
MboI	GATC	3 cut(s)	571, 583, 649
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	3 cut(s)	146, 169, 263
MluCI	AATT	1 cut(s)	587
Mly113I	GGCGCC	1 cut(s)	642
MseI	TTAA	1 cut(s)	117
MspA1I	CMGCKG	2 cut(s)	31, 365
MspR9I	CCNGG	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	646
MwoI	GCNNNNNNNGC	8 cut(s)	218, 227, 236, 258, 362, 365, 416, 705
NarI	GGCGCC	1 cut(s)	642
NdeI	CATATG	1 cut(s)	663
NdeII	GATC	3 cut(s)	571, 583, 649
NlaIII	CATG	3 cut(s)	105, 607, 615
NlaIV	GGNNCC	6 cut(s)	168, 262, 435, 550, 643, 651
NmuCI	GTSAC	1 cut(s)	689
NotI	GCGGCCGC	1 cut(s)	360
NspI	RCATGY	1 cut(s)	105
PaeI	GCATGC	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	3 cut(s)	56, 476, 491
PfeI	GAWTC	2 cut(s)	22, 608
PflFI	GACNNNGTC	1 cut(s)	49
PflMI	CCANNNNNTGG	1 cut(s)	352
PkrI	GCNGC	9 cut(s)	33, 220, 223, 241, 358, 361, 364, 367, 397
PluTI	GGCGCC	1 cut(s)	645
PpuMI	RGGWCCY	1 cut(s)	549
Psp5II	RGGWCCY	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	644
PspFI	CCCAGC	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	644
PspN4I	GGNNCC	6 cut(s)	168, 262, 435, 550, 643, 651
PspPI	GGNCC	2 cut(s)	433, 549
PspPPI	RGGWCCY	1 cut(s)	549
PstI	CTGCAG	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	649
PsyI	GACNNNGTC	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	9 cut(s)	32, 219, 222, 240, 357, 360, 363, 366, 396
Sau3AI	GATC	3 cut(s)	571, 583, 649
Sau96I	GGNCC	2 cut(s)	433, 549
ScrFI	CCNGG	1 cut(s)	646
SduI	GDGCHC	3 cut(s)	146, 169, 263
SetI	ASST	5 cut(s)	33, 140, 276, 507, 710
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	219
SfoI	GGCGCC	1 cut(s)	643
SinI	GGWCC	1 cut(s)	549
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SphI	GCATGC	1 cut(s)	105
Sse9I	AATT	1 cut(s)	587
SsiI	CCGC	5 cut(s)	16, 359, 363, 396, 408
SspDI	GGCGCC	1 cut(s)	641
StyD4I	CCNGG	1 cut(s)	644
TaaI	ACNGT	2 cut(s)	249, 325
TaqI	TCGA	5 cut(s)	53, 65, 479, 510, 636
TasI	AATT	1 cut(s)	587
TauI	GCSGC	3 cut(s)	362, 365, 398
TfiI	GAWTC	2 cut(s)	22, 608
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	45, 295
TseFI	GTSAC	1 cut(s)	689
TseI	GCWGC	6 cut(s)	31, 218, 221, 239, 356, 365
Tsp45I	GTSAC	1 cut(s)	689
TspDTI	ATGAA	1 cut(s)	600
TspRI	CASTG	2 cut(s)	45, 295
Tth111I	GACNNNGTC	1 cut(s)	49
Van91I	CCANNNNNTGG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	549
XceI	RCATGY	1 cut(s)	105
XcmI	CCANNNNNNNNNTGG	2 cut(s)	349, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.