AT1G22680

Protein of unknown function (DUF688)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014098
Physical Location & Seq
Reverse (-)
8024967 .. 8026356
1390 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G22680.1

Sequence Viewer

Length: 558 bp
ATGGATACTTCGCCAAGGACCCGAATTGTACCTACTAGACGATCCAACTCGGTCAAATTCTCCTCGACGGTTAACATTTCAACCCGGCGATCACTCTCTTCCTCCTCCTCCAATTCCCTCCTATTCTCCGGCAACTCTCCGGCAACTCCTCTCCATCCACTTGGCATCCCATTTTCATGGGAAAAGCTTCCCGGTAAACCTAAAGAGTTCTCGTATCACCGGAAAAACGAATCATTAAGCAACCTCTTGCCTCTCCCTCCTCACTGGAGTAACCATAGCCCTAACACCAGATGTAAGAAGAACACGTCCCCTGCGGCCATGAGAGATCCTTTCATGGCGGCGTTGGTAGAGTGTTCCAAAGGCGCTACCACAGACGGAGAACATACCGGCGGCGAATCAAGGAAGGTCTTGAGGAAGAGCAGGAGCATCGGGTTACTGAATCTTTACTCTTCTTGTAGAAGAGCTTGTGAAGTTTCTGAATCCATTGTTTATCTCCCGAAGTCCATTGCTTCCTACGATCATCTTCATCTCAGCACTCGTGGTCGTCGTCGCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

185

Amino Acids

20.59

Weight (kDa)

10.65

Isoelectric Point (pI)

70.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22680 AT1G71970
fragaria_vesca FvH4_2g11630
malus_domestica MD05G1042300.v1.1
prunus_persica Prupe.8G058900_v2.0.a1
pyrus_communis pycom05g03490 pycom10g03480
rosa_chinensis RchiOBHm_Chr6g0270871
rosa_laevigata RLG00000013763
rosa_multiflora Rmu_sc0010417.1_g000001
rosa_roxburghii Rroxscaffold_3G00238570 Rroxscaffold_7G00197560
rosa_samantha Rh6AG176400 Rh6BG179800 Rh6CG175800 Rh6DG168100
rosa_wichuraiana Rw6G015030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 314, 338, 390
AclWI GGATC 2 cut(s) 36, 320
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 1 cut(s) 56
AfaI GTAC 1 cut(s) 30
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 1 cut(s) 81
AjiI CACGTC 1 cut(s) 306
AluBI AGCT 2 cut(s) 187, 464
AluI AGCT 2 cut(s) 187, 464
AlwI GGATC 2 cut(s) 36, 320
AoxI GGCC 1 cut(s) 315
ApoI RAATTY 1 cut(s) 56
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 2 cut(s) 85, 192
AsuHPI GGTGA 1 cut(s) 209
AvaII GGWCC 1 cut(s) 18
BauI CACGAG 1 cut(s) 537
BccI CCATC 1 cut(s) 162
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BcnI CCSGG 2 cut(s) 85, 192
BfaI CTAG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 366
BisI GCNGC 3 cut(s) 315, 339, 391
BlsI GCNGC 3 cut(s) 316, 340, 392
Bme1390I CCNGG 2 cut(s) 85, 192
Bme18I GGWCC 1 cut(s) 18
BmgBI CACGTC 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 20
BmrFI CCNGG 2 cut(s) 85, 192
BmsI GCATC 2 cut(s) 174, 435
BpmI CTGGAG 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 430
BpuMI CCSGG 2 cut(s) 85, 192
BsaJI CCNNGG 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 219
Bse118I RCCGGY 1 cut(s) 386
Bse1I ACTGG 1 cut(s) 269
Bse3DI GCAATG 1 cut(s) 504
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 2 cut(s) 154, 165
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 1 cut(s) 544
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 5 cut(s) 52, 94, 97, 138, 249
BshFI GGCC 1 cut(s) 317
BsiSI CCGG 6 cut(s) 85, 129, 140, 192, 220, 387
BslFI GGGAC 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 292
BsnI GGCC 1 cut(s) 317
Bsp143I GATC 4 cut(s) 41, 89, 325, 517
BspACI CCGC 3 cut(s) 314, 338, 390
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 1 cut(s) 543
BspLI GGNNCC 1 cut(s) 20
BspPI GGATC 2 cut(s) 36, 320
BspQI GCTCTTC 2 cut(s) 410, 454
BsrDI GCAATG 1 cut(s) 504
BsrFI RCCGGY 1 cut(s) 386
BsrI ACTGG 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 4 cut(s) 41, 89, 325, 517
BssSI CACGAG 1 cut(s) 537
BssT1I CCWWGG 1 cut(s) 14
Bst2BI CACGAG 1 cut(s) 537
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 4 cut(s) 103, 410, 454, 454
BstDEI CTNAG 1 cut(s) 530
BstF5I GGATG 2 cut(s) 154, 165
BstH2I RGCGCY 1 cut(s) 366
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 4 cut(s) 44, 92, 328, 520
BstMBI GATC 4 cut(s) 41, 89, 325, 517
BstSCI CCNGG 2 cut(s) 83, 190
BstX2I RGATCY 1 cut(s) 325
BstXI CCANNNNNNTGG 2 cut(s) 161, 177
BstYI RGATCY 1 cut(s) 325
BsuRI GGCC 1 cut(s) 317
BtrI CACGTC 1 cut(s) 306
BtsCI GGATG 2 cut(s) 154, 165
BtsIMutI CAGTG 1 cut(s) 262
CfoI GCGC 1 cut(s) 365
Cfr10I RCCGGY 1 cut(s) 386
Cfr13I GGNCC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 29
CviAII CATG 3 cut(s) 177, 319, 334
CviJI RGCY 4 cut(s) 187, 279, 317, 464
CviKI_1 RGCY 4 cut(s) 187, 279, 317, 464
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 1 cut(s) 530
DpnI GATC 4 cut(s) 43, 91, 327, 519
DpnII GATC 4 cut(s) 41, 89, 325, 517
EaeI YGGCCR 1 cut(s) 315
Eam1104I CTCTTC 4 cut(s) 103, 410, 454, 454
EarI CTCTTC 4 cut(s) 103, 410, 454, 454
Eco130I CCWWGG 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 18
EcoO109I RGGNCCY 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 14
FaeI CATG 3 cut(s) 180, 322, 337
FaiI YATR 5 cut(s) 178, 276, 320, 335, 384
FaqI GGGAC 1 cut(s) 292
FatI CATG 3 cut(s) 176, 318, 333
Fnu4HI GCNGC 3 cut(s) 315, 339, 391
FokI GGATG 2 cut(s) 141, 152
Fsp4HI GCNGC 3 cut(s) 315, 339, 391
FspBI CTAG 1 cut(s) 36
GlaI GCGC 1 cut(s) 364
GluI GCNGC 3 cut(s) 315, 339, 391
GsuI CTGGAG 1 cut(s) 286
HaeII RGCGCY 1 cut(s) 366
HaeIII GGCC 1 cut(s) 317
HapII CCGG 6 cut(s) 85, 129, 140, 192, 220, 387
HhaI GCGC 1 cut(s) 365
Hin1II CATG 3 cut(s) 180, 322, 337
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 4 cut(s) 230, 395, 439, 479
HpaI GTTAAC 1 cut(s) 73
HpaII CCGG 6 cut(s) 85, 129, 140, 192, 220, 387
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 2 cut(s) 73, 197
Hpy188I TCNGA 1 cut(s) 478
Hpy188III TCNNGA 2 cut(s) 409, 496
Hpy8I GTNNAC 2 cut(s) 73, 197
Hpy99I CGWCG 3 cut(s) 70, 549, 552
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 305
HpyF3I CTNAG 1 cut(s) 530
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 3 cut(s) 180, 322, 337
HspAI GCGC 1 cut(s) 363
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 4 cut(s) 41, 89, 325, 517
LguI GCTCTTC 2 cut(s) 410, 454
LmnI GCTCC 1 cut(s) 423
LweI GCATC 2 cut(s) 174, 435
MaeI CTAG 1 cut(s) 36
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 2 cut(s) 269, 432
MalI GATC 4 cut(s) 43, 91, 327, 519
MboI GATC 4 cut(s) 41, 89, 325, 517
MboII GAAGA 6 cut(s) 90, 310, 427, 441, 471, 515
MflI RGATCY 1 cut(s) 325
MluCI AATT 3 cut(s) 24, 56, 112
MmeI TCCRAC 1 cut(s) 69
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 2 cut(s) 72, 236
MslI CAYNNNNRTG 1 cut(s) 175
MspI CCGG 6 cut(s) 85, 129, 140, 192, 220, 387
MspR9I CCNGG 2 cut(s) 85, 192
NciI CCSGG 2 cut(s) 85, 192
NdeII GATC 4 cut(s) 41, 89, 325, 517
NlaIII CATG 3 cut(s) 180, 322, 337
NlaIV GGNNCC 1 cut(s) 20
PciSI GCTCTTC 2 cut(s) 410, 454
PcsI WCGNNNNNNNCGW 2 cut(s) 544, 550
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 4 cut(s) 230, 395, 439, 479
PkrI GCNGC 3 cut(s) 316, 340, 392
PpuMI RGGWCCY 1 cut(s) 18
Psp5II RGGWCCY 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 20
PspPI GGNCC 1 cut(s) 18
PspPPI RGGWCCY 1 cut(s) 18
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 175
SapI GCTCTTC 2 cut(s) 410, 454
SaqAI TTAA 2 cut(s) 72, 236
SatI GCNGC 3 cut(s) 315, 339, 391
Sau3AI GATC 4 cut(s) 41, 89, 325, 517
Sau96I GGNCC 1 cut(s) 18
ScrFI CCNGG 2 cut(s) 85, 192
SetI ASST 7 cut(s) 34, 189, 202, 246, 308, 408, 466
SfaNI GCATC 2 cut(s) 174, 435
SinI GGWCC 1 cut(s) 18
SmiMI CAYNNNNRTG 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 409
SmoI CTYRAG 1 cut(s) 409
Sse9I AATT 3 cut(s) 24, 56, 112
SsiI CCGC 3 cut(s) 314, 338, 390
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 2 cut(s) 83, 190
StyI CCWWGG 1 cut(s) 14
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 1 cut(s) 308
TaqI TCGA 1 cut(s) 65
TaqII GACCGA 1 cut(s) 40
TasI AATT 3 cut(s) 24, 56, 112
TauI GCSGC 3 cut(s) 317, 341, 393
TfiI GAWTC 4 cut(s) 230, 395, 439, 479
Tru1I TTAA 2 cut(s) 72, 236
Tru9I TTAA 2 cut(s) 72, 236
TscAI CASTG 1 cut(s) 269
TspDTI ATGAA 3 cut(s) 165, 322, 515
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 18
XapI RAATTY 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.