AT1G71970

Protein of unknown function (DUF688)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
27092893 .. 27094035
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71970.1

Sequence Viewer

Length: 678 bp
ATGGATTCTTTAAGAACTCGAAATGTATCCAAAAGATCCGATCCGATCAACTTTCCGGCGAAGTCATCCATTTCATCCCGGAGATCATTATCTTCTTCTTCTTCCTTCTCATCTTTTTCCTCCTGCTCCTCTAGCTCCCTTGTCTTTCCCGGCGACTCTCCTCTGAATTCTCCGGCGACTCCTCTCCGTCTACTCGGTGTCCCTTTTTCATGGGAACAACTTCCCGGAAAACCTAAAGACTACTCTCATAGACTCAACAACCGTCGAAACAATGAATCTTCAAATCTATTGCTACCCCTCCCTCCTCACCGGAATATTTCCTTTCCGGCCACCGGAAAAAAACCTAAACCTAACAATTCCAGTAAGAAGAACAGCTTCCCCGTGACCGGAAAAGATCCCTTCGCGGCTGCGTTGTTGGAATGTTCCAAAGACGAAGGAACAAACAGTGACAACGATGATGACGTCGACGGTGTTGAAGACGTAGATCGAAGGTTTCGAGGAAACTCCGGTGGTTCAAGCAAGGTGTTGTCAAAGAACAGCATCGGAGACAGGTTTGGGTTAGTAAATCTCTACGGTTCTTGTCGGAGAACTTGTGCAGTAACAGAGTCCATTGTTTATCTTCCAAGAGCAAGAAAAGCTGCTTCGTACGATAATCTTCTTCCACGTCGTCGCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

225

Amino Acids

24.62

Weight (kDa)

9.94

Isoelectric Point (pI)

69.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014098)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 465
AccI GTMKAC 2 cut(s) 190, 465
AccII CGCG 1 cut(s) 404
AciI CCGC 1 cut(s) 404
AclWI GGATC 3 cut(s) 30, 35, 389
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 1 cut(s) 166
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 1 cut(s) 647
AfiI CCNNNNNNNGG 2 cut(s) 332, 386
AgsI TTSAA 3 cut(s) 282, 476, 516
AjiI CACGTC 1 cut(s) 665
AluBI AGCT 3 cut(s) 135, 375, 638
AluI AGCT 3 cut(s) 135, 375, 638
Alw26I GTCTC 1 cut(s) 540
AlwI GGATC 3 cut(s) 30, 35, 389
AoxI GGCC 1 cut(s) 327
ApeKI GCWGC 2 cut(s) 407, 638
ApoI RAATTY 1 cut(s) 166
Asp700I GAANNNNTTC 2 cut(s) 219, 374
AsuC2I CCSGG 3 cut(s) 79, 150, 225
AsuHPI GGTGA 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 483
BbvI GCAGC 2 cut(s) 394, 625
BciVI GTATCC 1 cut(s) 37
BcnI CCSGG 3 cut(s) 79, 150, 225
BcoDI GTCTC 1 cut(s) 540
BfaI CTAG 1 cut(s) 132
BfuI GTATCC 1 cut(s) 37
BisI GCNGC 3 cut(s) 405, 408, 639
BlsI GCNGC 3 cut(s) 406, 409, 640
Bme1390I CCNGG 3 cut(s) 79, 150, 225
BmgBI CACGTC 1 cut(s) 665
BmrFI CCNGG 3 cut(s) 79, 150, 225
BmsI GCATC 1 cut(s) 549
BpiI GAAGAC 1 cut(s) 483
BpuMI CCSGG 3 cut(s) 79, 150, 225
BsaBI GATNNNNATC 1 cut(s) 88
BsaHI GRCGYC 1 cut(s) 462
BsaWI WCCGGW 4 cut(s) 309, 332, 386, 506
BsaXI ACNNNNNCTCC 2 cut(s) 577, 607
Bsc4I CCNNNNNNNGG 2 cut(s) 332, 386
Bse1I ACTGG 1 cut(s) 360
Bse8I GATNNNNATC 1 cut(s) 88
BseGI GGATG 2 cut(s) 65, 74
BseJI GATNNNNATC 1 cut(s) 88
BseLI CCNNNNNNNGG 2 cut(s) 332, 386
BseNI ACTGG 1 cut(s) 360
BseRI GAGGAG 4 cut(s) 118, 150, 171, 294
BseXI GCAGC 2 cut(s) 394, 625
BsgI GTGCAG 1 cut(s) 615
Bsh1236I CGCG 1 cut(s) 404
BshFI GGCC 1 cut(s) 329
BsiWI CGTACG 1 cut(s) 645
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 2 cut(s) 332, 386
BsmAI GTCTC 1 cut(s) 540
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 1 cut(s) 329
Bsp143I GATC 6 cut(s) 35, 40, 45, 83, 394, 484
BspACI CCGC 1 cut(s) 404
BspANI GGCC 1 cut(s) 329
BspFNI CGCG 1 cut(s) 404
BspPI GGATC 3 cut(s) 30, 35, 389
BsrI ACTGG 1 cut(s) 360
BssMI GATC 6 cut(s) 35, 40, 45, 83, 394, 484
BssNI GRCGYC 1 cut(s) 462
Bst4CI ACNGT 4 cut(s) 263, 446, 470, 575
BstACI GRCGYC 1 cut(s) 462
BstF5I GGATG 2 cut(s) 65, 74
BstFNI CGCG 1 cut(s) 404
BstKTI GATC 6 cut(s) 38, 43, 48, 86, 397, 487
BstMAI GTCTC 1 cut(s) 540
BstMBI GATC 6 cut(s) 35, 40, 45, 83, 394, 484
BstMWI GCNNNNNNNGC 2 cut(s) 132, 635
BstSCI CCNGG 3 cut(s) 77, 148, 223
BstUI CGCG 1 cut(s) 404
BstV1I GCAGC 2 cut(s) 394, 625
BstV2I GAAGAC 1 cut(s) 483
BstX2I RGATCY 2 cut(s) 35, 394
BstYI RGATCY 2 cut(s) 35, 394
BsuI GTATCC 1 cut(s) 37
BsuRI GGCC 1 cut(s) 329
BtrI CACGTC 1 cut(s) 665
BtsCI GGATG 2 cut(s) 65, 74
BtsIMutI CAGTG 1 cut(s) 451
Csp6I GTAC 1 cut(s) 646
CviAII CATG 1 cut(s) 210
CviJI RGCY 5 cut(s) 135, 329, 375, 407, 638
CviKI_1 RGCY 5 cut(s) 135, 329, 375, 407, 638
CviQI GTAC 1 cut(s) 646
DpnI GATC 6 cut(s) 37, 42, 47, 85, 396, 486
DpnII GATC 6 cut(s) 35, 40, 45, 83, 394, 484
EaeI YGGCCR 1 cut(s) 327
EcoRI GAATTC 1 cut(s) 166
FaeI CATG 1 cut(s) 213
FaiI YATR 2 cut(s) 211, 249
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 1 cut(s) 185
FatI CATG 1 cut(s) 209
FblI GTMKAC 2 cut(s) 190, 465
Fnu4HI GCNGC 3 cut(s) 405, 408, 639
FokI GGATG 2 cut(s) 52, 61
Fsp4HI GCNGC 3 cut(s) 405, 408, 639
FspBI CTAG 1 cut(s) 132
GluI GCNGC 3 cut(s) 405, 408, 639
HaeIII GGCC 1 cut(s) 329
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 1 cut(s) 213
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 6 cut(s) 5, 155, 178, 252, 275, 605
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 2 cut(s) 191, 466
Hpy188I TCNGA 5 cut(s) 40, 45, 165, 545, 585
Hpy8I GTNNAC 2 cut(s) 191, 466
Hpy99I CGWCG 5 cut(s) 267, 467, 470, 669, 672
HpyAV CCTTC 4 cut(s) 115, 409, 428, 483
HpyCH4III ACNGT 4 cut(s) 263, 446, 470, 575
HpyCH4IV ACGT 3 cut(s) 462, 480, 664
HpyCH4V TGCA 1 cut(s) 596
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 635
HpySE526I ACGT 3 cut(s) 462, 480, 664
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 1 cut(s) 213
Kzo9I GATC 6 cut(s) 35, 40, 45, 83, 394, 484
LmnI GCTCC 2 cut(s) 131, 140
Lsp1109I GCAGC 2 cut(s) 394, 625
LweI GCATC 1 cut(s) 549
MaeI CTAG 1 cut(s) 132
MaeII ACGT 3 cut(s) 462, 480, 664
MaeIII GTNAC 3 cut(s) 382, 446, 598
MalI GATC 6 cut(s) 37, 42, 47, 85, 396, 486
MboI GATC 6 cut(s) 35, 40, 45, 83, 394, 484
MflI RGATCY 2 cut(s) 35, 394
MluCI AATT 2 cut(s) 166, 355
MlyI GAGTC 4 cut(s) 149, 172, 246, 614
MmeI TCCRAC 2 cut(s) 396, 563
MnlI CCTC 8 cut(s) 130, 139, 171, 192, 308, 312, 315, 491
MroXI GAANNNNTTC 2 cut(s) 219, 374
MseI TTAA 1 cut(s) 11
MspR9I CCNGG 3 cut(s) 79, 150, 225
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 2 cut(s) 132, 635
NciI CCSGG 3 cut(s) 79, 150, 225
NdeII GATC 6 cut(s) 35, 40, 45, 83, 394, 484
NlaIII CATG 1 cut(s) 213
NmuCI GTSAC 2 cut(s) 382, 446
PcsI WCGNNNNNNNCGW 2 cut(s) 459, 493
PdmI GAANNNNTTC 2 cut(s) 219, 374
PfeI GAWTC 2 cut(s) 5, 275
Pfl23II CGTACG 1 cut(s) 645
PfoI TCCNGGA 2 cut(s) 77, 223
PkrI GCNGC 3 cut(s) 406, 409, 640
PleI GAGTC 4 cut(s) 149, 172, 246, 613
PpsI GAGTC 4 cut(s) 149, 172, 246, 613
PspLI CGTACG 1 cut(s) 645
PsuI RGATCY 2 cut(s) 35, 394
RsaI GTAC 1 cut(s) 647
RsaNI GTAC 1 cut(s) 646
SalI GTCGAC 1 cut(s) 464
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 3 cut(s) 405, 408, 639
Sau3AI GATC 6 cut(s) 35, 40, 45, 83, 394, 484
SchI GAGTC 4 cut(s) 149, 172, 246, 614
ScrFI CCNGG 3 cut(s) 79, 150, 225
SfaNI GCATC 1 cut(s) 549
SgrDI CGTCGACG 1 cut(s) 464
Sse9I AATT 2 cut(s) 166, 355
SsiI CCGC 1 cut(s) 404
SspI AATATT 1 cut(s) 316
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 3 cut(s) 77, 148, 223
TaaI ACNGT 4 cut(s) 263, 446, 470, 575
TaiI ACGT 3 cut(s) 465, 483, 667
TaqI TCGA 5 cut(s) 19, 265, 465, 487, 496
TasI AATT 2 cut(s) 166, 355
TauI GCSGC 1 cut(s) 407
TfiI GAWTC 2 cut(s) 5, 275
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 2 cut(s) 382, 446
TseI GCWGC 2 cut(s) 407, 638
Tsp45I GTSAC 2 cut(s) 382, 446
TspDTI ATGAA 3 cut(s) 63, 198, 288
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 1 cut(s) 451
XapI RAATTY 1 cut(s) 166
XmiI GTMKAC 2 cut(s) 190, 465
XmnI GAANNNNTTC 2 cut(s) 219, 374
XspI CTAG 1 cut(s) 132
ZraI GACGTC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.