FvH4_2g11630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014098
Physical Location & Seq
Reverse (-)
10157609 .. 10160596
2988 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11630.t1

Sequence Viewer

Length: 675 bp
ATGAAGCTACATCCTTCTACTTCCTCCCTAAGACCATCGTCTTCTTCTTCTTCATTACCTTTATTTATGTCTTCCTTTAATGTCCCTGATCGTGATGATTCCCCTGCCACCACCCCGTTTCGATTTTCTGGTGTCCCATTTTCCTGGGAACACGTTCCTGGAATTCCAAAGAAACAAAGCTTGAACTGCAAGAAGAAGGAAAATTGCAGCTCATCATCACTGAAGATTCTCCCATTGCCTCCTACAACCACTCATCAAGCTCCGAAAAAGAAGCCATCATCCAACCCCAAGCAAACTAGTACGTTCCCCAAAGATCCTTTCGTTGCCGCTTTAGTGGAGTGTTCCAAGGAGGAAGATGAAGAACAAGATCAATATTCCAAGAACAATGGTCAAGCTGACATATTCCAATGGAGTGCCAAGGGACGCCGCAGAGGAGGTCGTGAGGGGGTGGAGGAGGGGACGAATTTGGGAGAACTGTCGGAGGAGAAAGGGGTAGGAGGCTATGAGGAGGAGGAGGAGGAGGTCGATGTAGATTGGGTTGGAGATGCCGAGTTTCAGTTTGAAGTCGTCGAACTTGAAGGGATGAATCTCAGAGCAAAGACGAAAGTAGAACAATGCAAGGACGAAAGTAGCCTTGAAATACTGTCAGTTAACGACGTCATGACGACAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

225

Amino Acids

24.88

Weight (kDa)

4.98

Isoelectric Point (pI)

63.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22680 AT1G71970
fragaria_vesca FvH4_2g11630
malus_domestica MD05G1042300.v1.1
prunus_persica Prupe.8G058900_v2.0.a1
pyrus_communis pycom05g03490 pycom10g03480
rosa_chinensis RchiOBHm_Chr6g0270871
rosa_laevigata RLG00000013763
rosa_multiflora Rmu_sc0010417.1_g000001
rosa_roxburghii Rroxscaffold_3G00238570 Rroxscaffold_7G00197560
rosa_samantha Rh6AG176400 Rh6BG179800 Rh6CG175800 Rh6DG168100
rosa_wichuraiana Rw6G015030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 660
AciI CCGC 2 cut(s) 327, 427
AclWI GGATC 1 cut(s) 308
AcsI RAATTY 2 cut(s) 162, 463
AcuI CTGAAG 1 cut(s) 242
AcyI GRCGYC 2 cut(s) 424, 657
AfaI GTAC 1 cut(s) 301
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 4 cut(s) 184, 563, 578, 638
AhlI ACTAGT 1 cut(s) 296
AjnI CCWGG 2 cut(s) 143, 157
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AluBI AGCT 5 cut(s) 7, 180, 210, 260, 395
AluI AGCT 5 cut(s) 7, 180, 210, 260, 395
AlwI GGATC 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 207
ApoI RAATTY 2 cut(s) 162, 463
Asp700I GAANNNNTTC 1 cut(s) 153
BbsI GAAGAC 2 cut(s) 33, 63
BbvI GCAGC 1 cut(s) 219
BccI CCATC 2 cut(s) 43, 283
BciT130I CCWGG 2 cut(s) 145, 159
BcuI ACTAGT 1 cut(s) 296
BfaI CTAG 1 cut(s) 297
BisI GCNGC 3 cut(s) 208, 327, 427
BlsI GCNGC 3 cut(s) 209, 328, 428
Bme1390I CCNGG 2 cut(s) 145, 159
BmrFI CCNGG 2 cut(s) 145, 159
BmsI GCATC 1 cut(s) 535
BoxI GACNNNNGTC 1 cut(s) 37
BpiI GAAGAC 2 cut(s) 33, 63
BsaHI GRCGYC 2 cut(s) 424, 657
BsaJI CCNNGG 3 cut(s) 144, 345, 417
Bse3DI GCAATG 1 cut(s) 233
BseBI CCWGG 2 cut(s) 145, 159
BseDI CCNNGG 3 cut(s) 144, 345, 417
BseGI GGATG 3 cut(s) 10, 278, 588
BseMI GCAATG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 604
BseRI GAGGAG 8 cut(s) 447, 467, 497, 521, 524, 527, 530, 533
BseXI GCAGC 1 cut(s) 219
BslFI GGGAC 4 cut(s) 68, 119, 435, 472
BsmFI GGGAC 4 cut(s) 68, 119, 435, 472
Bsp143I GATC 3 cut(s) 88, 313, 367
BspACI CCGC 2 cut(s) 327, 427
BspCNI CTCAG 1 cut(s) 603
BspHI TCATGA 1 cut(s) 660
BspPI GGATC 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 233
BssECI CCNNGG 3 cut(s) 144, 345, 417
BssMI GATC 3 cut(s) 88, 313, 367
BssNI GRCGYC 2 cut(s) 424, 657
BssT1I CCWWGG 2 cut(s) 345, 417
Bst2UI CCWGG 2 cut(s) 145, 159
Bst4CI ACNGT 2 cut(s) 477, 645
BstACI GRCGYC 2 cut(s) 424, 657
BstDEI CTNAG 2 cut(s) 29, 590
BstF5I GGATG 3 cut(s) 10, 278, 588
BstKTI GATC 3 cut(s) 91, 316, 370
BstMBI GATC 3 cut(s) 88, 313, 367
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstNI CCWGG 2 cut(s) 145, 159
BstPAI GACNNNNGTC 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 143, 157
BstV1I GCAGC 1 cut(s) 219
BstV2I GAAGAC 2 cut(s) 33, 63
BstX2I RGATCY 1 cut(s) 313
BstXI CCANNNNNNTGG 1 cut(s) 144
BstYI RGATCY 1 cut(s) 313
BtsCI GGATG 3 cut(s) 10, 278, 588
BtsIMutI CAGTG 1 cut(s) 218
CciI TCATGA 1 cut(s) 660
CseI GACGC 1 cut(s) 432
Csp6I GTAC 1 cut(s) 300
CviAII CATG 1 cut(s) 661
CviJI RGCY 8 cut(s) 7, 180, 210, 260, 274, 395, 501, 633
CviKI_1 RGCY 8 cut(s) 7, 180, 210, 260, 274, 395, 501, 633
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 2 cut(s) 29, 590
DpnI GATC 3 cut(s) 90, 315, 369
DpnII GATC 3 cut(s) 88, 313, 367
Eco130I CCWWGG 2 cut(s) 345, 417
Eco57I CTGAAG 1 cut(s) 242
EcoRI GAATTC 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 143, 157
EcoT14I CCWWGG 2 cut(s) 345, 417
ErhI CCWWGG 2 cut(s) 345, 417
FaeI CATG 1 cut(s) 664
FaiI YATR 4 cut(s) 68, 401, 504, 662
FaqI GGGAC 4 cut(s) 68, 119, 435, 472
FatI CATG 1 cut(s) 660
Fnu4HI GCNGC 3 cut(s) 208, 327, 427
FokI GGATG 2 cut(s) 265, 595
Fsp4HI GCNGC 3 cut(s) 208, 327, 427
FspBI CTAG 1 cut(s) 297
GluI GCNGC 3 cut(s) 208, 327, 427
HgaI GACGC 1 cut(s) 432
Hin1I GRCGYC 2 cut(s) 424, 657
Hin1II CATG 1 cut(s) 664
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HindIII AAGCTT 1 cut(s) 178
HinfI GANTC 3 cut(s) 98, 226, 586
HpaI GTTAAC 1 cut(s) 652
Hpy166II GTNNAC 1 cut(s) 652
Hpy188I TCNGA 3 cut(s) 264, 481, 593
Hpy188III TCNNGA 3 cut(s) 92, 440, 661
Hpy8I GTNNAC 1 cut(s) 652
Hpy99I CGWCG 2 cut(s) 572, 659
HpyAV CCTTC 3 cut(s) 24, 190, 572
HpyCH4III ACNGT 2 cut(s) 477, 645
HpyCH4IV ACGT 3 cut(s) 153, 302, 657
HpyCH4V TGCA 3 cut(s) 189, 207, 618
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpyF3I CTNAG 2 cut(s) 29, 590
HpySE526I ACGT 3 cut(s) 153, 302, 657
Hsp92I GRCGYC 2 cut(s) 424, 657
Hsp92II CATG 1 cut(s) 664
KspAI GTTAAC 1 cut(s) 652
Kzo9I GATC 3 cut(s) 88, 313, 367
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 7 cut(s) 99, 114, 117, 130, 144, 157, 171
Lsp1109I GCAGC 1 cut(s) 219
LweI GCATC 1 cut(s) 535
MaeI CTAG 1 cut(s) 297
MaeII ACGT 3 cut(s) 153, 302, 657
MalI GATC 3 cut(s) 90, 315, 369
MboI GATC 3 cut(s) 88, 313, 367
MboII GAAGA 9 cut(s) 33, 36, 39, 42, 63, 205, 235, 365, 371
MflI RGATCY 1 cut(s) 313
MluCI AATT 3 cut(s) 162, 202, 463
MmeI TCCRAC 3 cut(s) 306, 459, 520
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 2 cut(s) 78, 651
MspR9I CCNGG 2 cut(s) 145, 159
MvaI CCWGG 2 cut(s) 145, 159
MwoI GCNNNNNNNGC 1 cut(s) 186
NdeII GATC 3 cut(s) 88, 313, 367
NlaIII CATG 1 cut(s) 664
NmeAIII GCCGAG 1 cut(s) 574
PagI TCATGA 1 cut(s) 660
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 3 cut(s) 98, 226, 586
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 3 cut(s) 209, 328, 428
PshAI GACNNNNGTC 1 cut(s) 37
Psp6I CCWGG 2 cut(s) 143, 157
PspGI CCWGG 2 cut(s) 143, 157
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
SaqAI TTAA 2 cut(s) 78, 651
SatI GCNGC 3 cut(s) 208, 327, 427
Sau3AI GATC 3 cut(s) 88, 313, 367
ScrFI CCNGG 2 cut(s) 145, 159
SfaNI GCATC 1 cut(s) 535
SpeI ACTAGT 1 cut(s) 296
Sse9I AATT 3 cut(s) 162, 202, 463
SsiI CCGC 2 cut(s) 327, 427
SspI AATATT 1 cut(s) 374
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 2 cut(s) 143, 157
StyI CCWWGG 2 cut(s) 345, 417
TaaI ACNGT 2 cut(s) 477, 645
TaiI ACGT 3 cut(s) 156, 305, 660
TaqI TCGA 3 cut(s) 121, 525, 570
TasI AATT 3 cut(s) 162, 202, 463
TauI GCSGC 2 cut(s) 329, 429
TfiI GAWTC 3 cut(s) 98, 226, 586
Tru1I TTAA 2 cut(s) 78, 651
Tru9I TTAA 2 cut(s) 78, 651
TscAI CASTG 1 cut(s) 225
TseI GCWGC 1 cut(s) 207
TspDTI ATGAA 4 cut(s) 17, 42, 372, 599
TspRI CASTG 1 cut(s) 225
XapI RAATTY 2 cut(s) 162, 463
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 1 cut(s) 297
ZraI GACGTC 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.