Rroxscaffold_3G00238570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014098
Physical Location & Seq
Reverse (-)
26764634 .. 26765080
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00238570.1

Sequence Viewer

Length: 447 bp
ATGTCCCTGATCATGATAATTCCCCTGCCACCACCCCCTTTCGATTTTCTGGTGTCCCATTTTCCTGGGAACATTTTCCCATCATTGAAGGTTCTTCCATTGCCTCCTACAACCGCTCATCAAGCTCTGAAAAAGAAGCCCTCATCCAACTCAAAGCAGACTAGTACATTTCCGAAAGATCCTTTCGTTGCTGCTTTAGTTGAGTGTTCCAAGGAGGAAGATGAAGAAGAAGATCTATATTCCAAGAACAATGGTCAAGCTGACATATTCCAATGGAGTGCCAAGGTATCAAGAAGTGTAAGTGCAGGTTTGGATTTGTCAACCTTTATGCATCGTCTTGTAAAAGAAGTTGTGCAGTTTCTCAATCTATCATACATGTTCCCGATCAGTAGAACCTCCTCTAACTACGATCTACTTAGTCACCGTTCCCGTTCCCATTCCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

148

Amino Acids

16.66

Weight (kDa)

8.74

Isoelectric Point (pI)

69.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22680 AT1G71970
fragaria_vesca FvH4_2g11630
malus_domestica MD05G1042300.v1.1
prunus_persica Prupe.8G058900_v2.0.a1
pyrus_communis pycom05g03490 pycom10g03480
rosa_chinensis RchiOBHm_Chr6g0270871
rosa_laevigata RLG00000013763
rosa_multiflora Rmu_sc0010417.1_g000001
rosa_roxburghii Rroxscaffold_3G00238570 Rroxscaffold_7G00197560
rosa_samantha Rh6AG176400 Rh6BG179800 Rh6CG175800 Rh6DG168100
rosa_wichuraiana Rw6G015030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 296
AccBSI CCGCTC 1 cut(s) 116
AciI CCGC 1 cut(s) 114
AclWI GGATC 1 cut(s) 173
AfaI GTAC 1 cut(s) 166
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 1 cut(s) 88
AhlI ACTAGT 1 cut(s) 161
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 2 cut(s) 125, 260
AluI AGCT 2 cut(s) 125, 260
AlwI GGATC 1 cut(s) 173
ApeKI GCWGC 1 cut(s) 191
Asp700I GAANNNNTTC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 413
BbvI GCAGC 1 cut(s) 178
BccI CCATC 1 cut(s) 88
BciT130I CCWGG 1 cut(s) 66
BclI TGATCA 1 cut(s) 9
BcuI ACTAGT 1 cut(s) 161
BfaI CTAG 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 296
BglII AGATCT 1 cut(s) 232
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 340
BsaJI CCNNGG 3 cut(s) 65, 210, 282
Bse3DI GCAATG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 3 cut(s) 65, 210, 282
BseGI GGATG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 388
BseXI GCAGC 1 cut(s) 178
BsgI GTGCAG 2 cut(s) 324, 374
BslFI GGGAC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 40
Bsp143I GATC 5 cut(s) 9, 178, 232, 384, 409
BspACI CCGC 1 cut(s) 114
BspHI TCATGA 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 296
BspPI GGATC 1 cut(s) 173
BsrBI CCGCTC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 98
BssECI CCNNGG 3 cut(s) 65, 210, 282
BssMI GATC 5 cut(s) 9, 178, 232, 384, 409
BssT1I CCWWGG 2 cut(s) 210, 282
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 425
BstDEI CTNAG 1 cut(s) 416
BstF5I GGATG 1 cut(s) 143
BstKTI GATC 5 cut(s) 12, 181, 235, 387, 412
BstMBI GATC 5 cut(s) 9, 178, 232, 384, 409
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 66
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 178
BstX2I RGATCY 2 cut(s) 178, 232
BstXI CCANNNNNNTGG 1 cut(s) 65
BstYI RGATCY 2 cut(s) 178, 232
BtsCI GGATG 1 cut(s) 143
BveI ACCTGC 1 cut(s) 296
CciI TCATGA 1 cut(s) 12
Csp6I GTAC 1 cut(s) 165
CviAII CATG 2 cut(s) 13, 376
CviJI RGCY 3 cut(s) 125, 139, 260
CviKI_1 RGCY 3 cut(s) 125, 139, 260
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 1 cut(s) 416
DpnI GATC 5 cut(s) 11, 180, 234, 386, 411
DpnII GATC 5 cut(s) 9, 178, 232, 384, 409
Eco130I CCWWGG 2 cut(s) 210, 282
EcoRII CCWGG 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 210, 282
EcoT22I ATGCAT 1 cut(s) 333
ErhI CCWWGG 2 cut(s) 210, 282
FaeI CATG 2 cut(s) 16, 379
FaiI YATR 6 cut(s) 14, 238, 266, 329, 373, 377
FaqI GGGAC 1 cut(s) 40
FatI CATG 2 cut(s) 12, 375
FbaI TGATCA 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 1 cut(s) 162
GluI GCNGC 1 cut(s) 192
Hin1II CATG 2 cut(s) 16, 379
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 2 cut(s) 129, 174
Hpy188III TCNNGA 4 cut(s) 13, 291, 382, 441
Hpy8I GTNNAC 1 cut(s) 321
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 425
HpyCH4V TGCA 3 cut(s) 305, 331, 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 416
Hsp92II CATG 2 cut(s) 16, 379
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 5 cut(s) 9, 178, 232, 384, 409
LpnPI CCDG 6 cut(s) 20, 35, 38, 51, 78, 291
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 340
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 419
MalI GATC 5 cut(s) 11, 180, 234, 386, 411
MbiI CCGCTC 1 cut(s) 116
MboI GATC 5 cut(s) 9, 178, 232, 384, 409
MboII GAAGA 5 cut(s) 86, 230, 236, 239, 242
MflI RGATCY 2 cut(s) 178, 232
MluCI AATT 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 5 cut(s) 114, 151, 208, 406, 409
Mph1103I ATGCAT 1 cut(s) 333
MroXI GAANNNNTTC 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 5 cut(s) 9, 178, 232, 384, 409
NlaIII CATG 2 cut(s) 16, 379
NmuCI GTSAC 1 cut(s) 419
NsiI ATGCAT 1 cut(s) 333
NspI RCATGY 1 cut(s) 379
PagI TCATGA 1 cut(s) 12
PciI ACATGT 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 193
PscI ACATGT 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PsuI RGATCY 2 cut(s) 178, 232
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 5 cut(s) 9, 178, 232, 384, 409
ScrFI CCNGG 1 cut(s) 66
SetI ASST 7 cut(s) 93, 127, 262, 288, 310, 326, 398
SfaNI GCATC 1 cut(s) 340
SpeI ACTAGT 1 cut(s) 161
Sse9I AATT 1 cut(s) 18
SsiI CCGC 1 cut(s) 114
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 2 cut(s) 210, 282
TaaI ACNGT 1 cut(s) 425
TaqI TCGA 1 cut(s) 42
TasI AATT 1 cut(s) 18
TatI WGTACW 1 cut(s) 164
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 1 cut(s) 237
XceI RCATGY 1 cut(s) 379
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 1 cut(s) 162
Zsp2I ATGCAT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.