Rh6CG175800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0014098
Physical Location & Seq
Reverse (-)
24881746 .. 24882357
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG175800.1

Sequence Viewer

Length: 612 bp
ATGGAGTCCCCATCAGCAACTCCAGGCAGAAACACAGTATTTCCAGCCATGAAGCTACATCCATCTTCTTCCTCTCCAAGACGGCCATTTTCTTTTTCACCTTCATCTTTTAATGTCCCTGATCATGATGATTCCCCTGCCACCACCCCGTTTCTATTTTCTGGTGTCCCATTTTCCTGGGAACAATTTCCTGGAATTCCAAAGAAACAAAGCTTCAATTGCAAGAAGAATGAACACTGCAGCTCACCATCATTGAAGGTTCTCCCATTGCCTCCTACAACTGCCCATCAAGCTCCGAAAAAGAAGCCCTCATCCAACTCAAAGCAGACTAGTACATTTCCGAAAGATCCTTTTGTTGCTGCTTTAGTTGAGTGTTCCAAGGAGGAAGATGAAGAAGAAGATCAATATTCCAAGAACAATGGTCAATGGAGTGCCAAGGTATCAAGAAGTGTAAGTGACAGGTTTGGATTTGTCAATCTTTATGCATCGTCGTGTAAAAGAAGTTGTGCAGTTTCTCAATCTATCATACATGTTCCGAGGCCGCTCAGTAGAACCTCCTCTAACTACGATCTACTTAGTCACCGTTCCCGTTCCCGTTCCCGTTCCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

203

Amino Acids

22.54

Weight (kDa)

9.68

Isoelectric Point (pI)

92.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22680 AT1G71970
fragaria_vesca FvH4_2g11630
malus_domestica MD05G1042300.v1.1
prunus_persica Prupe.8G058900_v2.0.a1
pyrus_communis pycom05g03490 pycom10g03480
rosa_chinensis RchiOBHm_Chr6g0270871
rosa_laevigata RLG00000013763
rosa_multiflora Rmu_sc0010417.1_g000001
rosa_roxburghii Rroxscaffold_3G00238570 Rroxscaffold_7G00197560
rosa_samantha Rh6AG176400 Rh6BG179800 Rh6CG175800 Rh6DG168100
rosa_wichuraiana Rw6G015030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 544
AciI CCGC 1 cut(s) 542
AclWI GGATC 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 1 cut(s) 195
AfaI GTAC 1 cut(s) 334
AflIII ACRYGT 1 cut(s) 529
AgsI TTSAA 2 cut(s) 217, 256
AhlI ACTAGT 1 cut(s) 329
AjnI CCWGG 3 cut(s) 22, 176, 190
AluBI AGCT 4 cut(s) 55, 213, 243, 293
AluI AGCT 4 cut(s) 55, 213, 243, 293
AlwI GGATC 1 cut(s) 341
AoxI GGCC 2 cut(s) 83, 539
ApeKI GCWGC 2 cut(s) 240, 359
ApoI RAATTY 1 cut(s) 195
Asp700I GAANNNNTTC 1 cut(s) 186
AsuHPI GGTGA 3 cut(s) 90, 237, 572
BbvI GCAGC 2 cut(s) 252, 346
BccI CCATC 4 cut(s) 19, 70, 256, 294
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 3 cut(s) 24, 178, 192
BclI TGATCA 1 cut(s) 121
BcuI ACTAGT 1 cut(s) 329
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 238
BisI GCNGC 3 cut(s) 241, 360, 542
BlsI GCNGC 3 cut(s) 242, 361, 543
Bme1390I CCNGG 3 cut(s) 24, 178, 192
BmrFI CCNGG 3 cut(s) 24, 178, 192
BmsI GCATC 1 cut(s) 494
BpmI CTGGAG 1 cut(s) 6
BsaJI CCNNGG 4 cut(s) 177, 378, 435, 536
Bse3DI GCAATG 1 cut(s) 266
BseBI CCWGG 3 cut(s) 24, 178, 192
BseDI CCNNGG 4 cut(s) 177, 378, 435, 536
BseGI GGATG 2 cut(s) 58, 311
BseMI GCAATG 1 cut(s) 266
BseMII CTCAG 1 cut(s) 559
BseRI GAGGAG 1 cut(s) 547
BseXI GCAGC 2 cut(s) 252, 346
BsgI GTGCAG 1 cut(s) 528
BshFI GGCC 2 cut(s) 85, 541
BslFI GGGAC 2 cut(s) 101, 152
BsmFI GGGAC 2 cut(s) 101, 152
BsnI GGCC 2 cut(s) 85, 541
Bsp143I GATC 4 cut(s) 121, 346, 400, 568
BspACI CCGC 1 cut(s) 542
BspANI GGCC 2 cut(s) 85, 541
BspCNI CTCAG 1 cut(s) 558
BspHI TCATGA 1 cut(s) 124
BspMAI CTGCAG 1 cut(s) 242
BspPI GGATC 1 cut(s) 341
BsrBI CCGCTC 1 cut(s) 544
BsrDI GCAATG 1 cut(s) 266
BssECI CCNNGG 4 cut(s) 177, 378, 435, 536
BssMI GATC 4 cut(s) 121, 346, 400, 568
BssT1I CCWWGG 2 cut(s) 378, 435
Bst2UI CCWGG 3 cut(s) 24, 178, 192
Bst4CI ACNGT 2 cut(s) 37, 584
BstDEI CTNAG 2 cut(s) 545, 575
BstF5I GGATG 2 cut(s) 58, 311
BstKTI GATC 4 cut(s) 124, 349, 403, 571
BstMBI GATC 4 cut(s) 121, 346, 400, 568
BstMWI GCNNNNNNNGC 2 cut(s) 219, 290
BstNI CCWGG 3 cut(s) 24, 178, 192
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 3 cut(s) 22, 176, 190
BstSFI CTRYAG 1 cut(s) 238
BstV1I GCAGC 2 cut(s) 252, 346
BstX2I RGATCY 1 cut(s) 346
BstXI CCANNNNNNTGG 1 cut(s) 177
BstYI RGATCY 1 cut(s) 346
BsuRI GGCC 2 cut(s) 85, 541
BtsCI GGATG 2 cut(s) 58, 311
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 235
CciI TCATGA 1 cut(s) 124
Csp6I GTAC 1 cut(s) 333
CviAII CATG 3 cut(s) 49, 125, 530
CviJI RGCY 8 cut(s) 47, 55, 85, 213, 243, 293, 307, 541
CviKI_1 RGCY 8 cut(s) 47, 55, 85, 213, 243, 293, 307, 541
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 2 cut(s) 545, 575
DpnI GATC 4 cut(s) 123, 348, 402, 570
DpnII GATC 4 cut(s) 121, 346, 400, 568
EaeI YGGCCR 1 cut(s) 83
Eco130I CCWWGG 2 cut(s) 378, 435
EcoRI GAATTC 1 cut(s) 195
EcoRII CCWGG 3 cut(s) 22, 176, 190
EcoT14I CCWWGG 2 cut(s) 378, 435
EcoT22I ATGCAT 1 cut(s) 487
ErhI CCWWGG 2 cut(s) 378, 435
FaeI CATG 3 cut(s) 52, 128, 533
FaiI YATR 5 cut(s) 50, 126, 483, 527, 531
FaqI GGGAC 2 cut(s) 101, 152
FatI CATG 3 cut(s) 48, 124, 529
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 241, 360, 542
FokI GGATG 2 cut(s) 45, 298
Fsp4HI GCNGC 3 cut(s) 241, 360, 542
FspBI CTAG 1 cut(s) 330
GluI GCNGC 3 cut(s) 241, 360, 542
GsuI CTGGAG 1 cut(s) 6
HaeIII GGCC 2 cut(s) 85, 541
Hin1II CATG 3 cut(s) 52, 128, 533
HindIII AAGCTT 1 cut(s) 211
HinfI GANTC 2 cut(s) 5, 131
HphI GGTGA 3 cut(s) 90, 237, 572
Hpy188I TCNGA 3 cut(s) 297, 342, 537
Hpy188III TCNNGA 3 cut(s) 125, 444, 606
Hpy99I CGWCG 1 cut(s) 493
HpyAV CCTTC 2 cut(s) 111, 250
HpyCH4III ACNGT 2 cut(s) 37, 584
HpyCH4V TGCA 4 cut(s) 222, 240, 485, 509
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 290
HpyF3I CTNAG 2 cut(s) 545, 575
Hsp92II CATG 3 cut(s) 52, 128, 533
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 4 cut(s) 121, 346, 400, 568
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 2 cut(s) 252, 346
LweI GCATC 1 cut(s) 494
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 2 cut(s) 455, 578
MalI GATC 4 cut(s) 123, 348, 402, 570
MbiI CCGCTC 1 cut(s) 544
MboI GATC 4 cut(s) 121, 346, 400, 568
MboII GAAGA 7 cut(s) 57, 60, 238, 398, 404, 407, 410
MfeI CAATTG 1 cut(s) 217
MflI RGATCY 1 cut(s) 346
MluCI AATT 3 cut(s) 185, 195, 217
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 7 cut(s) 82, 282, 319, 376, 531, 565, 568
Mph1103I ATGCAT 1 cut(s) 487
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 490
MspR9I CCNGG 3 cut(s) 24, 178, 192
MunI CAATTG 1 cut(s) 217
MvaI CCWGG 3 cut(s) 24, 178, 192
MwoI GCNNNNNNNGC 2 cut(s) 219, 290
NdeII GATC 4 cut(s) 121, 346, 400, 568
NlaIII CATG 3 cut(s) 52, 128, 533
NmuCI GTSAC 2 cut(s) 455, 578
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 1 cut(s) 533
PagI TCATGA 1 cut(s) 124
PciI ACATGT 1 cut(s) 529
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 131
PfoI TCCNGGA 1 cut(s) 190
PkrI GCNGC 3 cut(s) 242, 361, 543
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PscI ACATGT 1 cut(s) 529
Psp6I CCWGG 3 cut(s) 22, 176, 190
PspGI CCWGG 3 cut(s) 22, 176, 190
PstI CTGCAG 1 cut(s) 242
PsuI RGATCY 1 cut(s) 346
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
RseI CAYNNNNRTG 1 cut(s) 490
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 3 cut(s) 241, 360, 542
Sau3AI GATC 4 cut(s) 121, 346, 400, 568
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 24, 178, 192
SetI ASST 9 cut(s) 57, 103, 215, 245, 261, 295, 441, 464, 557
SfaNI GCATC 1 cut(s) 494
SfcI CTRYAG 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 490
SpeI ACTAGT 1 cut(s) 329
Sse9I AATT 3 cut(s) 185, 195, 217
SsiI CCGC 1 cut(s) 542
SspI AATATT 1 cut(s) 407
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 3 cut(s) 22, 176, 190
StyI CCWWGG 2 cut(s) 378, 435
TaaI ACNGT 2 cut(s) 37, 584
TasI AATT 3 cut(s) 185, 195, 217
TatI WGTACW 1 cut(s) 332
TauI GCSGC 1 cut(s) 544
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 1 cut(s) 242
TseFI GTSAC 2 cut(s) 455, 578
TseI GCWGC 2 cut(s) 240, 359
Tsp45I GTSAC 2 cut(s) 455, 578
TspDTI ATGAA 4 cut(s) 65, 93, 246, 405
TspRI CASTG 1 cut(s) 242
XapI RAATTY 1 cut(s) 195
XceI RCATGY 1 cut(s) 533
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 1 cut(s) 330
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.