RLG00000013763

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0014098
Physical Location & Seq
Forward (+)
40508567 .. 40509199
633 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013763

Sequence Viewer

Length: 633 bp
ATGGAGTCCTCATCAGCAACTCCAAGCAGAAACACAGTATTTCCAGCCATGAAGCTACAGCCATCTTCTTCCTCTCGAAGACAGCCCTTTTCTTTTTCACCATCATCTTTTGTATCATCCTTTAATGTCCCTGATCATGATGATTCCCCTGCCACCACCCCACTTCGATTTTCTGGTGTCCCATTTTCTTGGGAACATTTTCCTGGAATTCCAAAGAAACAAAGCTTCAATTGCAAGAAGAAGGAACACTGCAGCTCACCATCATTGAAGGTTCTCCCATTGCCTCCTACAACCGCTCATCAAGCTCTGAAAAAGAAGCCCTCATCCAACTCAAAGCAGACTAGTACATTTCCGAAAGATCCTTTCGTTGCTGCTTTAGTTGAGTGTTCCAAGGAGGAAGATGAAGAAGAAGATCAATATTCCAAGAACAATGGTCAAGCTGACACATTCCAATGGAGTGCCAAGGTATCAAGAAGTGTAAGTGACAGGTTTGGATTTGTCAATCTTTATGCATCGTCTTGTAAAAGAAGTTGTGCAGTTTCTCAATCTATCATACATGTTCCGAGGCCGATCAGTAGAACCTCCTCTAACTACGATCTACTTAGTCACCGTTCCCGTTCCCGTTCCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

211

Amino Acids

23.37

Weight (kDa)

9.65

Isoelectric Point (pI)

88.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22680 AT1G71970
fragaria_vesca FvH4_2g11630
malus_domestica MD05G1042300.v1.1
prunus_persica Prupe.8G058900_v2.0.a1
pyrus_communis pycom05g03490 pycom10g03480
rosa_chinensis RchiOBHm_Chr6g0270871
rosa_laevigata RLG00000013763
rosa_multiflora Rmu_sc0010417.1_g000001
rosa_roxburghii Rroxscaffold_3G00238570 Rroxscaffold_7G00197560
rosa_samantha Rh6AG176400 Rh6BG179800 Rh6CG175800 Rh6DG168100
rosa_wichuraiana Rw6G015030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 296
AciI CCGC 1 cut(s) 294
AclWI GGATC 1 cut(s) 353
AcsI RAATTY 1 cut(s) 207
AfaI GTAC 1 cut(s) 346
AflIII ACRYGT 1 cut(s) 556
AgsI TTSAA 2 cut(s) 229, 268
AhlI ACTAGT 1 cut(s) 341
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 5 cut(s) 55, 225, 255, 305, 440
AluI AGCT 5 cut(s) 55, 225, 255, 305, 440
AlwI GGATC 1 cut(s) 353
AoxI GGCC 1 cut(s) 566
ApeKI GCWGC 2 cut(s) 252, 371
ApoI RAATTY 1 cut(s) 207
Asp700I GAANNNNTTC 1 cut(s) 198
AsuHPI GGTGA 3 cut(s) 90, 249, 599
BbsI GAAGAC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 264, 358
BccI CCATC 3 cut(s) 70, 109, 268
BciT130I CCWGG 1 cut(s) 204
BclI TGATCA 1 cut(s) 133
BcuI ACTAGT 1 cut(s) 341
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 2 cut(s) 56, 250
BisI GCNGC 2 cut(s) 253, 372
BlsI GCNGC 2 cut(s) 254, 373
Bme1390I CCNGG 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 521
BpiI GAAGAC 1 cut(s) 85
BsaJI CCNNGG 3 cut(s) 390, 462, 563
Bse3DI GCAATG 1 cut(s) 278
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 3 cut(s) 390, 462, 563
BseGI GGATG 2 cut(s) 116, 323
BseMI GCAATG 1 cut(s) 278
BseRI GAGGAG 1 cut(s) 574
BseXI GCAGC 2 cut(s) 264, 358
BsgI GTGCAG 1 cut(s) 555
BshFI GGCC 1 cut(s) 568
BslFI GGGAC 2 cut(s) 113, 164
BsmFI GGGAC 2 cut(s) 113, 164
BsnI GGCC 1 cut(s) 568
Bsp143I GATC 5 cut(s) 133, 358, 412, 570, 595
BspACI CCGC 1 cut(s) 294
BspANI GGCC 1 cut(s) 568
BspHI TCATGA 1 cut(s) 136
BspMAI CTGCAG 1 cut(s) 254
BspPI GGATC 1 cut(s) 353
BsrBI CCGCTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 278
BssECI CCNNGG 3 cut(s) 390, 462, 563
BssMI GATC 5 cut(s) 133, 358, 412, 570, 595
BssT1I CCWWGG 2 cut(s) 390, 462
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 37, 611
BstDEI CTNAG 1 cut(s) 602
BstF5I GGATG 2 cut(s) 116, 323
BstKTI GATC 5 cut(s) 136, 361, 415, 573, 598
BstMBI GATC 5 cut(s) 133, 358, 412, 570, 595
BstMWI GCNNNNNNNGC 2 cut(s) 231, 302
BstNI CCWGG 1 cut(s) 204
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 1 cut(s) 202
BstSFI CTRYAG 2 cut(s) 56, 250
BstV1I GCAGC 2 cut(s) 264, 358
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 358
BstXI CCANNNNNNTGG 1 cut(s) 189
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 1 cut(s) 568
BtsCI GGATG 2 cut(s) 116, 323
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 247
CciI TCATGA 1 cut(s) 136
Csp6I GTAC 1 cut(s) 345
CviAII CATG 3 cut(s) 49, 137, 557
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 1 cut(s) 602
DpnI GATC 5 cut(s) 135, 360, 414, 572, 597
DpnII GATC 5 cut(s) 133, 358, 412, 570, 595
Eco130I CCWWGG 2 cut(s) 390, 462
EcoRI GAATTC 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 202
EcoT14I CCWWGG 2 cut(s) 390, 462
EcoT22I ATGCAT 1 cut(s) 514
ErhI CCWWGG 2 cut(s) 390, 462
FaeI CATG 3 cut(s) 52, 140, 560
FaiI YATR 5 cut(s) 50, 138, 510, 554, 558
FaqI GGGAC 2 cut(s) 113, 164
FatI CATG 3 cut(s) 48, 136, 556
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 253, 372
FokI GGATG 2 cut(s) 103, 310
Fsp4HI GCNGC 2 cut(s) 253, 372
FspBI CTAG 1 cut(s) 342
GluI GCNGC 2 cut(s) 253, 372
HaeIII GGCC 1 cut(s) 568
Hin1II CATG 3 cut(s) 52, 140, 560
HindIII AAGCTT 1 cut(s) 223
HinfI GANTC 2 cut(s) 5, 143
HphI GGTGA 3 cut(s) 90, 249, 599
Hpy188I TCNGA 3 cut(s) 309, 354, 564
Hpy188III TCNNGA 4 cut(s) 75, 137, 471, 627
HpyAV CCTTC 2 cut(s) 235, 262
HpyCH4III ACNGT 2 cut(s) 37, 611
HpyCH4V TGCA 4 cut(s) 234, 252, 512, 536
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 302
HpyF3I CTNAG 1 cut(s) 602
Hsp92II CATG 3 cut(s) 52, 140, 560
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 5 cut(s) 133, 358, 412, 570, 595
LpnPI CCDG 7 cut(s) 57, 144, 159, 162, 189, 216, 472
Lsp1109I GCAGC 2 cut(s) 264, 358
LweI GCATC 1 cut(s) 521
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 2 cut(s) 482, 605
MalI GATC 5 cut(s) 135, 360, 414, 572, 597
MbiI CCGCTC 1 cut(s) 296
MboI GATC 5 cut(s) 133, 358, 412, 570, 595
MboII GAAGA 8 cut(s) 57, 60, 90, 250, 410, 416, 419, 422
MfeI CAATTG 1 cut(s) 229
MflI RGATCY 1 cut(s) 358
MluCI AATT 2 cut(s) 207, 229
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 8 cut(s) 19, 82, 294, 331, 388, 558, 592, 595
Mph1103I ATGCAT 1 cut(s) 514
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 451
MspR9I CCNGG 1 cut(s) 204
MunI CAATTG 1 cut(s) 229
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 231, 302
NdeII GATC 5 cut(s) 133, 358, 412, 570, 595
NlaIII CATG 3 cut(s) 52, 140, 560
NmuCI GTSAC 2 cut(s) 482, 605
NsiI ATGCAT 1 cut(s) 514
NspI RCATGY 1 cut(s) 560
PagI TCATGA 1 cut(s) 136
PciI ACATGT 1 cut(s) 556
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 143
PfoI TCCNGGA 1 cut(s) 202
PkrI GCNGC 2 cut(s) 254, 373
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PscI ACATGT 1 cut(s) 556
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PstI CTGCAG 1 cut(s) 254
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 451
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 2 cut(s) 253, 372
Sau3AI GATC 5 cut(s) 133, 358, 412, 570, 595
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 204
SetI ASST 9 cut(s) 57, 227, 257, 273, 307, 442, 468, 491, 584
SfaNI GCATC 1 cut(s) 521
SfcI CTRYAG 2 cut(s) 56, 250
SmiMI CAYNNNNRTG 1 cut(s) 451
SpeI ACTAGT 1 cut(s) 341
Sse9I AATT 2 cut(s) 207, 229
SsiI CCGC 1 cut(s) 294
SspI AATATT 1 cut(s) 419
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 202
StyI CCWWGG 2 cut(s) 390, 462
TaaI ACNGT 2 cut(s) 37, 611
TaqI TCGA 2 cut(s) 76, 166
TasI AATT 2 cut(s) 207, 229
TatI WGTACW 1 cut(s) 344
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 254
TseFI GTSAC 2 cut(s) 482, 605
TseI GCWGC 2 cut(s) 252, 371
Tsp45I GTSAC 2 cut(s) 482, 605
TspDTI ATGAA 2 cut(s) 65, 417
TspRI CASTG 1 cut(s) 254
XapI RAATTY 1 cut(s) 207
XceI RCATGY 1 cut(s) 560
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 1 cut(s) 342
Zsp2I ATGCAT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.