Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0014098

Physical Location & Seq

Genomic Coordinates Reverse (-)

30914287 .. 30915074

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG179800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAGTCCTCATCAGCAACTCCAGGCAGAAACACAGTATTTCCAGCCATGAAGCTACATCCATCTTCTTCCTCTCCAAGACGGCCATTTTCTTTTTCACCTTCATCTTTTGTATCATCCTTTAATGTCCCTGATCATGATGATTCCCCTGCCACCACCCCGTTTCTATTTTCTGGTGTCCCATTTTCCTGGGAACATTTTCCTGGAATTCCAAAGAAACAAAGCTTCAATTGCAAGAAGACTGAACACTGCAGCTCACCATCATTGAAGGTTCTCCCATTGCCTCCTACAACTGCACATCAAGCTCCGAAAAAGAAGCCCTCATCCAACTCAAAGCAGACTAGTACATTTCCGAAAGATCCTTTTGTTGCTGCTTTAGTTGAGTGTTCCAAGGAGGAAGATGAAGAAGAAGATCAATATTCCAAGAACAATGGTCAATGGAGTGCCAAGGTATCAAGAAGTCAGCATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

157

Amino Acids

17.33

Weight (kDa)

8.44

Isoelectric Point (pI)

79.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22680 AT1G71970
fragaria_vesca	FvH4_2g11630
malus_domestica	MD05G1042300.v1.1
prunus_persica	Prupe.8G058900_v2.0.a1
pyrus_communis	pycom05g03490 pycom10g03480
rosa_chinensis	RchiOBHm_Chr6g0270871
rosa_laevigata	RLG00000013763
rosa_multiflora	Rmu_sc0010417.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238570 Rroxscaffold_7G00197560
rosa_samantha	Rh6AG176400 Rh6BG179800 Rh6CG175800 Rh6DG168100
rosa_wichuraiana	Rw6G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	353
AcoI	YGGCCR	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	207
AfaI	GTAC	1 cut(s)	346
AgsI	TTSAA	2 cut(s)	229, 268
AhlI	ACTAGT	1 cut(s)	341
AjnI	CCWGG	3 cut(s)	22, 188, 202
AluBI	AGCT	4 cut(s)	55, 225, 255, 305
AluI	AGCT	4 cut(s)	55, 225, 255, 305
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	252, 371
ApoI	RAATTY	1 cut(s)	207
Asp700I	GAANNNNTTC	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	90, 249
BbsI	GAAGAC	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	264, 358
BccI	CCATC	2 cut(s)	70, 268
BceAI	ACGGC	1 cut(s)	98
BciT130I	CCWGG	3 cut(s)	24, 190, 204
BclI	TGATCA	1 cut(s)	133
BcuI	ACTAGT	1 cut(s)	341
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	250
BisI	GCNGC	2 cut(s)	253, 372
BlsI	GCNGC	2 cut(s)	254, 373
Bme1390I	CCNGG	3 cut(s)	24, 190, 204
BmrFI	CCNGG	3 cut(s)	24, 190, 204
BpiI	GAAGAC	1 cut(s)	245
BpmI	CTGGAG	1 cut(s)	6
BsaJI	CCNNGG	3 cut(s)	189, 390, 447
Bse3DI	GCAATG	1 cut(s)	278
BseBI	CCWGG	3 cut(s)	24, 190, 204
BseDI	CCNNGG	3 cut(s)	189, 390, 447
BseGI	GGATG	3 cut(s)	58, 116, 323
BseMI	GCAATG	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	264, 358
BsgI	GTGCAG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	85
BslFI	GGGAC	2 cut(s)	113, 164
BsmFI	GGGAC	2 cut(s)	113, 164
BsnI	GGCC	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	133, 358, 412
BspANI	GGCC	1 cut(s)	85
BspHI	TCATGA	1 cut(s)	136
BspMAI	CTGCAG	1 cut(s)	254
BspPI	GGATC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	278
BssECI	CCNNGG	3 cut(s)	189, 390, 447
BssMI	GATC	3 cut(s)	133, 358, 412
BssT1I	CCWWGG	2 cut(s)	390, 447
Bst2UI	CCWGG	3 cut(s)	24, 190, 204
Bst4CI	ACNGT	1 cut(s)	37
BstF5I	GGATG	3 cut(s)	58, 116, 323
BstKTI	GATC	3 cut(s)	136, 361, 415
BstMBI	GATC	3 cut(s)	133, 358, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	231, 302
BstNI	CCWGG	3 cut(s)	24, 190, 204
BstSCI	CCNGG	3 cut(s)	22, 188, 202
BstSFI	CTRYAG	1 cut(s)	250
BstV1I	GCAGC	2 cut(s)	264, 358
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	85
BtsCI	GGATG	3 cut(s)	58, 116, 323
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	247
CciI	TCATGA	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	345
CviAII	CATG	3 cut(s)	49, 137, 467
CviJI	RGCY	7 cut(s)	47, 55, 85, 225, 255, 305, 319
CviKI_1	RGCY	7 cut(s)	47, 55, 85, 225, 255, 305, 319
CviQI	GTAC	1 cut(s)	345
DpnI	GATC	3 cut(s)	135, 360, 414
DpnII	GATC	3 cut(s)	133, 358, 412
EaeI	YGGCCR	1 cut(s)	83
Eco130I	CCWWGG	2 cut(s)	390, 447
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	3 cut(s)	22, 188, 202
EcoT14I	CCWWGG	2 cut(s)	390, 447
ErhI	CCWWGG	2 cut(s)	390, 447
FaeI	CATG	3 cut(s)	52, 140, 470
FaiI	YATR	3 cut(s)	50, 138, 468
FaqI	GGGAC	2 cut(s)	113, 164
FatI	CATG	3 cut(s)	48, 136, 466
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	253, 372
FokI	GGATG	3 cut(s)	45, 103, 310
Fsp4HI	GCNGC	2 cut(s)	253, 372
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	2 cut(s)	253, 372
GsuI	CTGGAG	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	85
Hin1II	CATG	3 cut(s)	52, 140, 470
HindIII	AAGCTT	1 cut(s)	223
HinfI	GANTC	2 cut(s)	5, 143
HphI	GGTGA	2 cut(s)	90, 249
Hpy188I	TCNGA	2 cut(s)	309, 354
Hpy188III	TCNNGA	2 cut(s)	137, 456
HpyAV	CCTTC	2 cut(s)	111, 262
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	3 cut(s)	234, 252, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	231, 302
Hsp92II	CATG	3 cut(s)	52, 140, 470
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	133, 358, 412
LmnI	GCTCC	1 cut(s)	310
Lsp1109I	GCAGC	2 cut(s)	264, 358
MaeI	CTAG	1 cut(s)	342
MalI	GATC	3 cut(s)	135, 360, 414
MboI	GATC	3 cut(s)	133, 358, 412
MboII	GAAGA	7 cut(s)	57, 60, 250, 410, 416, 419, 422
MfeI	CAATTG	1 cut(s)	229
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	2 cut(s)	207, 229
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	5 cut(s)	19, 82, 294, 331, 388
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	1 cut(s)	123
MspR9I	CCNGG	3 cut(s)	24, 190, 204
MunI	CAATTG	1 cut(s)	229
MvaI	CCWGG	3 cut(s)	24, 190, 204
MwoI	GCNNNNNNNGC	2 cut(s)	231, 302
NdeII	GATC	3 cut(s)	133, 358, 412
NlaIII	CATG	3 cut(s)	52, 140, 470
PagI	TCATGA	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	143
PfoI	TCCNGGA	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	254, 373
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	3 cut(s)	22, 188, 202
PspGI	CCWGG	3 cut(s)	22, 188, 202
PstI	CTGCAG	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	253, 372
Sau3AI	GATC	3 cut(s)	133, 358, 412
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	3 cut(s)	24, 190, 204
SetI	ASST	7 cut(s)	57, 103, 227, 257, 273, 307, 453
SfcI	CTRYAG	1 cut(s)	250
SpeI	ACTAGT	1 cut(s)	341
Sse9I	AATT	2 cut(s)	207, 229
SspI	AATATT	1 cut(s)	419
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	3 cut(s)	22, 188, 202
StyI	CCWWGG	2 cut(s)	390, 447
TaaI	ACNGT	1 cut(s)	37
TasI	AATT	2 cut(s)	207, 229
TatI	WGTACW	1 cut(s)	344
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	254
TseI	GCWGC	2 cut(s)	252, 371
TspDTI	ATGAA	3 cut(s)	65, 93, 417
TspRI	CASTG	1 cut(s)	254
XapI	RAATTY	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.