Rw6G015030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0014098
Physical Location & Seq
Reverse (-)
28227236 .. 28227895
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G015030.1

Sequence Viewer

Length: 660 bp
ATGAACGCAGCAGTAGAGTTGGAACAACAACAGAAGTTGAAGTATGGAGTCCTCATCAGCAACTCCAGGCAGAAACACAGTTTTCCAGTCATGAAGTTACATCCATCTTCTTCCTCTCCAAGACGGCCATTTTCTTTTTCACCTTCATCTTTTGTATCATCCTTTAATGTCCCTGATCATGATGATTCCCCTGCCACCACCCCGTTTCTATTTTCTGGTGTCCCATTTTCCTGGGAACATTTTCCTGGAATTCCAAAGAAACAAAGCTTCAATTGCAAGAAGAATGAACACTGCAGCTCACCATCATTGAAGGTTCTCCCATTGCCTCCTACAACTGCACATCAAGCTCCGAAAAAGAAGCCCTCATCCAACTCAAAGCAGACTAGTACATTTCCGAAAGATCCTTTTGTTGCTGCTTTAGTTGAGTGTTCCAAGGAGGAAGATGAAGAAGAAGATCAATATTCCAAGAACAATGGTCAATGGAGTGCCAAGGTATCAAGAAGTGTAAGTGACAGGTTTGGATTTGTCAATCTTTATGCATCGTCGTGTAAAAGAAGTTGTGCAGTTTCTCAATCTATCATACATGTTCCGAGGCCGCTCAGTAGAACCTCCTCTAACTACGATCTACTTAGTCACCGTTCCCGTTCCCGTTCCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

219

Amino Acids

24.51

Weight (kDa)

9.66

Isoelectric Point (pI)

82.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22680 AT1G71970
fragaria_vesca FvH4_2g11630
malus_domestica MD05G1042300.v1.1
prunus_persica Prupe.8G058900_v2.0.a1
pyrus_communis pycom05g03490 pycom10g03480
rosa_chinensis RchiOBHm_Chr6g0270871
rosa_laevigata RLG00000013763
rosa_multiflora Rmu_sc0010417.1_g000001
rosa_roxburghii Rroxscaffold_3G00238570 Rroxscaffold_7G00197560
rosa_samantha Rh6AG176400 Rh6BG179800 Rh6CG175800 Rh6DG168100
rosa_wichuraiana Rw6G015030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 598
AciI CCGC 1 cut(s) 596
AclWI GGATC 1 cut(s) 395
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 1 cut(s) 249
AfaI GTAC 1 cut(s) 388
AflIII ACRYGT 1 cut(s) 583
AgsI TTSAA 3 cut(s) 40, 271, 310
AhlI ACTAGT 1 cut(s) 383
AjnI CCWGG 3 cut(s) 65, 230, 244
AluBI AGCT 3 cut(s) 267, 297, 347
AluI AGCT 3 cut(s) 267, 297, 347
AlwI GGATC 1 cut(s) 395
AoxI GGCC 2 cut(s) 125, 593
ApeKI GCWGC 3 cut(s) 8, 294, 413
ApoI RAATTY 1 cut(s) 249
Asp700I GAANNNNTTC 1 cut(s) 240
AsuHPI GGTGA 3 cut(s) 132, 291, 626
BbvI GCAGC 3 cut(s) 20, 306, 400
BccI CCATC 2 cut(s) 112, 310
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 3 cut(s) 67, 232, 246
BclI TGATCA 1 cut(s) 175
BcuI ACTAGT 1 cut(s) 383
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 292
BisI GCNGC 4 cut(s) 9, 295, 414, 596
BlsI GCNGC 4 cut(s) 10, 296, 415, 597
Bme1390I CCNGG 3 cut(s) 67, 232, 246
BmrFI CCNGG 3 cut(s) 67, 232, 246
BmsI GCATC 1 cut(s) 548
BpmI CTGGAG 1 cut(s) 49
BsaJI CCNNGG 4 cut(s) 231, 432, 489, 590
Bse1I ACTGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 320
BseBI CCWGG 3 cut(s) 67, 232, 246
BseDI CCNNGG 4 cut(s) 231, 432, 489, 590
BseGI GGATG 3 cut(s) 100, 158, 365
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 613
BseNI ACTGG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 601
BseXI GCAGC 3 cut(s) 20, 306, 400
BsgI GTGCAG 2 cut(s) 321, 582
BshFI GGCC 2 cut(s) 127, 595
BslFI GGGAC 2 cut(s) 155, 206
BsmFI GGGAC 2 cut(s) 155, 206
BsnI GGCC 2 cut(s) 127, 595
Bsp143I GATC 4 cut(s) 175, 400, 454, 622
BspACI CCGC 1 cut(s) 596
BspANI GGCC 2 cut(s) 127, 595
BspCNI CTCAG 1 cut(s) 612
BspHI TCATGA 2 cut(s) 90, 178
BspMAI CTGCAG 1 cut(s) 296
BspPI GGATC 1 cut(s) 395
BsrBI CCGCTC 1 cut(s) 598
BsrDI GCAATG 1 cut(s) 320
BsrI ACTGG 1 cut(s) 86
BssECI CCNNGG 4 cut(s) 231, 432, 489, 590
BssMI GATC 4 cut(s) 175, 400, 454, 622
BssT1I CCWWGG 2 cut(s) 432, 489
Bst2UI CCWGG 3 cut(s) 67, 232, 246
Bst4CI ACNGT 2 cut(s) 80, 638
BstDEI CTNAG 2 cut(s) 599, 629
BstF5I GGATG 3 cut(s) 100, 158, 365
BstKTI GATC 4 cut(s) 178, 403, 457, 625
BstMBI GATC 4 cut(s) 175, 400, 454, 622
BstMWI GCNNNNNNNGC 2 cut(s) 273, 344
BstNI CCWGG 3 cut(s) 67, 232, 246
BstNSI RCATGY 1 cut(s) 587
BstSCI CCNGG 3 cut(s) 65, 230, 244
BstSFI CTRYAG 1 cut(s) 292
BstV1I GCAGC 3 cut(s) 20, 306, 400
BstX2I RGATCY 1 cut(s) 400
BstXI CCANNNNNNTGG 1 cut(s) 231
BstYI RGATCY 1 cut(s) 400
BsuRI GGCC 2 cut(s) 127, 595
BtsCI GGATG 3 cut(s) 100, 158, 365
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 289
CciI TCATGA 2 cut(s) 90, 178
Csp6I GTAC 1 cut(s) 387
CviAII CATG 3 cut(s) 91, 179, 584
CviJI RGCY 6 cut(s) 127, 267, 297, 347, 361, 595
CviKI_1 RGCY 6 cut(s) 127, 267, 297, 347, 361, 595
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 2 cut(s) 599, 629
DpnI GATC 4 cut(s) 177, 402, 456, 624
DpnII GATC 4 cut(s) 175, 400, 454, 622
EaeI YGGCCR 1 cut(s) 125
Eco130I CCWWGG 2 cut(s) 432, 489
EcoRI GAATTC 1 cut(s) 249
EcoRII CCWGG 3 cut(s) 65, 230, 244
EcoT14I CCWWGG 2 cut(s) 432, 489
EcoT22I ATGCAT 1 cut(s) 541
ErhI CCWWGG 2 cut(s) 432, 489
FaeI CATG 3 cut(s) 94, 182, 587
FaiI YATR 6 cut(s) 45, 92, 180, 537, 581, 585
FaqI GGGAC 2 cut(s) 155, 206
FatI CATG 3 cut(s) 90, 178, 583
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 4 cut(s) 9, 295, 414, 596
FokI GGATG 3 cut(s) 87, 145, 352
Fsp4HI GCNGC 4 cut(s) 9, 295, 414, 596
FspBI CTAG 1 cut(s) 384
GluI GCNGC 4 cut(s) 9, 295, 414, 596
GsuI CTGGAG 1 cut(s) 49
HaeIII GGCC 2 cut(s) 127, 595
Hin1II CATG 3 cut(s) 94, 182, 587
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 2 cut(s) 48, 185
HphI GGTGA 3 cut(s) 132, 291, 626
Hpy188I TCNGA 3 cut(s) 351, 396, 591
Hpy188III TCNNGA 4 cut(s) 91, 179, 498, 654
Hpy99I CGWCG 1 cut(s) 547
HpyAV CCTTC 2 cut(s) 153, 304
HpyCH4III ACNGT 2 cut(s) 80, 638
HpyCH4V TGCA 5 cut(s) 276, 294, 338, 539, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 273, 344
HpyF3I CTNAG 2 cut(s) 599, 629
Hsp92II CATG 3 cut(s) 94, 182, 587
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 4 cut(s) 175, 400, 454, 622
LmnI GCTCC 1 cut(s) 352
Lsp1109I GCAGC 3 cut(s) 20, 306, 400
LweI GCATC 1 cut(s) 548
MaeI CTAG 1 cut(s) 384
MaeIII GTNAC 3 cut(s) 96, 509, 632
MalI GATC 4 cut(s) 177, 402, 456, 624
MbiI CCGCTC 1 cut(s) 598
MboI GATC 4 cut(s) 175, 400, 454, 622
MboII GAAGA 7 cut(s) 99, 102, 292, 452, 458, 461, 464
MfeI CAATTG 1 cut(s) 271
MflI RGATCY 1 cut(s) 400
MluCI AATT 2 cut(s) 249, 271
MlyI GAGTC 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 393
MnlI CCTC 8 cut(s) 62, 124, 336, 373, 430, 585, 619, 622
Mph1103I ATGCAT 1 cut(s) 541
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 544
MspR9I CCNGG 3 cut(s) 67, 232, 246
MunI CAATTG 1 cut(s) 271
MvaI CCWGG 3 cut(s) 67, 232, 246
MwoI GCNNNNNNNGC 2 cut(s) 273, 344
NdeII GATC 4 cut(s) 175, 400, 454, 622
NlaIII CATG 3 cut(s) 94, 182, 587
NmuCI GTSAC 2 cut(s) 509, 632
NsiI ATGCAT 1 cut(s) 541
NspI RCATGY 1 cut(s) 587
PagI TCATGA 2 cut(s) 90, 178
PciI ACATGT 1 cut(s) 583
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 185
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 4 cut(s) 10, 296, 415, 597
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PscI ACATGT 1 cut(s) 583
Psp6I CCWGG 3 cut(s) 65, 230, 244
PspGI CCWGG 3 cut(s) 65, 230, 244
PstI CTGCAG 1 cut(s) 296
PsuI RGATCY 1 cut(s) 400
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
RseI CAYNNNNRTG 1 cut(s) 544
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 4 cut(s) 9, 295, 414, 596
Sau3AI GATC 4 cut(s) 175, 400, 454, 622
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 3 cut(s) 67, 232, 246
SetI ASST 8 cut(s) 145, 269, 299, 315, 349, 495, 518, 611
SfaNI GCATC 1 cut(s) 548
SfcI CTRYAG 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 544
SpeI ACTAGT 1 cut(s) 383
Sse9I AATT 2 cut(s) 249, 271
SsiI CCGC 1 cut(s) 596
SspI AATATT 1 cut(s) 461
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 3 cut(s) 65, 230, 244
StyI CCWWGG 2 cut(s) 432, 489
TaaI ACNGT 2 cut(s) 80, 638
TasI AATT 2 cut(s) 249, 271
TatI WGTACW 1 cut(s) 386
TauI GCSGC 1 cut(s) 598
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 296
TseFI GTSAC 2 cut(s) 509, 632
TseI GCWGC 3 cut(s) 8, 294, 413
Tsp45I GTSAC 2 cut(s) 509, 632
TspDTI ATGAA 5 cut(s) 17, 107, 135, 300, 459
TspRI CASTG 1 cut(s) 296
XapI RAATTY 1 cut(s) 249
XceI RCATGY 1 cut(s) 587
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 384
Zsp2I ATGCAT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.