Rroxscaffold_7G00197560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0014098
Physical Location & Seq
Forward (+)
41900179 .. 41900793
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00197560.1

Sequence Viewer

Length: 615 bp
ATGGAGTCCTCATCAGCAACTCCAGGCAGAAACACAATATTTCCAGCCATGAAGCTACATCCATCTTCTTCCTCTCGAAGAAGGCCATTATTTTCTTTTTCACCTTCATCTTTTGTATCATCCTTTAATGTCCCTGATCATGATGATTCCCCTGCCACCACCCCGTTTCCATTTTCTGGTGTCCCGTTTTCCTGGGAACATTTTCCTGGAATTCCAAAGAAACAAAGCTTCAATTGCAAGAAGAATGAACACTGCAGCTCACCATCATTGAAGGTTCTCCCATTGCCTCCTACAACCGCTCACCAAGCTCCGAAAAAGAAGCCCTCATCCAACTCAAAGCAGACTAGTACATTTCCGAAAGATCCTTTTGTTGCTGCTTTAGTTGAGTGTTCCAAGGAGGAAGATGAAGAAGAAGATCAATATTCCAAGAACAATGGTCAATGGAGTGCCAAGGTATCAAGAAGTGTAAGTGACAGGTTTGGATTTGTCAATCTTTATGCATCGTCTTGTAAAAGAAGTTGTGCAGTTTCTCAATCTATCATACATGTTCCGAGGCCAATCAGTAGAACCTCCTCTAACTACGATCTACTTAGTCACCGTTCCCGTTCCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

204

Amino Acids

22.64

Weight (kDa)

9.58

Isoelectric Point (pI)

87.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22680 AT1G71970
fragaria_vesca FvH4_2g11630
malus_domestica MD05G1042300.v1.1
prunus_persica Prupe.8G058900_v2.0.a1
pyrus_communis pycom05g03490 pycom10g03480
rosa_chinensis RchiOBHm_Chr6g0270871
rosa_laevigata RLG00000013763
rosa_multiflora Rmu_sc0010417.1_g000001
rosa_roxburghii Rroxscaffold_3G00238570 Rroxscaffold_7G00197560
rosa_samantha Rh6AG176400 Rh6BG179800 Rh6CG175800 Rh6DG168100
rosa_wichuraiana Rw6G015030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 176
AccBSI CCGCTC 1 cut(s) 299
AciI CCGC 1 cut(s) 297
AclWI GGATC 1 cut(s) 356
AcsI RAATTY 1 cut(s) 210
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 1 cut(s) 176
AflIII ACRYGT 1 cut(s) 544
AgsI TTSAA 2 cut(s) 232, 271
AhlI ACTAGT 1 cut(s) 344
AjnI CCWGG 3 cut(s) 22, 191, 205
AluBI AGCT 4 cut(s) 55, 228, 258, 308
AluI AGCT 4 cut(s) 55, 228, 258, 308
AlwI GGATC 1 cut(s) 356
AoxI GGCC 2 cut(s) 83, 554
ApeKI GCWGC 2 cut(s) 255, 374
ApoI RAATTY 1 cut(s) 210
Asp700I GAANNNNTTC 1 cut(s) 201
AsuHPI GGTGA 4 cut(s) 93, 252, 293, 587
BbvI GCAGC 2 cut(s) 267, 361
BccI CCATC 2 cut(s) 70, 271
BciT130I CCWGG 3 cut(s) 24, 193, 207
BclI TGATCA 1 cut(s) 136
BcuI ACTAGT 1 cut(s) 344
BfaI CTAG 1 cut(s) 345
BfmI CTRYAG 1 cut(s) 253
BisI GCNGC 2 cut(s) 256, 375
BlsI GCNGC 2 cut(s) 257, 376
Bme1390I CCNGG 3 cut(s) 24, 193, 207
BmrFI CCNGG 3 cut(s) 24, 193, 207
BmsI GCATC 1 cut(s) 509
BpmI CTGGAG 1 cut(s) 6
BsaJI CCNNGG 4 cut(s) 192, 393, 450, 551
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 281
BseBI CCWGG 3 cut(s) 24, 193, 207
BseDI CCNNGG 4 cut(s) 192, 393, 450, 551
BseGI GGATG 3 cut(s) 58, 119, 326
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMI GCAATG 1 cut(s) 281
BseRI GAGGAG 1 cut(s) 562
BseXI GCAGC 2 cut(s) 267, 361
BsgI GTGCAG 1 cut(s) 543
BshFI GGCC 2 cut(s) 85, 556
BslFI GGGAC 2 cut(s) 116, 167
BslI CCNNNNNNNGG 1 cut(s) 176
BsmFI GGGAC 2 cut(s) 116, 167
BsnI GGCC 2 cut(s) 85, 556
Bsp143I GATC 4 cut(s) 136, 361, 415, 583
BspACI CCGC 1 cut(s) 297
BspANI GGCC 2 cut(s) 85, 556
BspHI TCATGA 1 cut(s) 139
BspMAI CTGCAG 1 cut(s) 257
BspPI GGATC 1 cut(s) 356
BsrBI CCGCTC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 281
BssECI CCNNGG 4 cut(s) 192, 393, 450, 551
BssMI GATC 4 cut(s) 136, 361, 415, 583
BssT1I CCWWGG 2 cut(s) 393, 450
Bst2UI CCWGG 3 cut(s) 24, 193, 207
Bst4CI ACNGT 1 cut(s) 599
BstDEI CTNAG 1 cut(s) 590
BstF5I GGATG 3 cut(s) 58, 119, 326
BstKTI GATC 4 cut(s) 139, 364, 418, 586
BstMBI GATC 4 cut(s) 136, 361, 415, 583
BstMWI GCNNNNNNNGC 2 cut(s) 234, 305
BstNI CCWGG 3 cut(s) 24, 193, 207
BstNSI RCATGY 1 cut(s) 548
BstSCI CCNGG 3 cut(s) 22, 191, 205
BstSFI CTRYAG 1 cut(s) 253
BstV1I GCAGC 2 cut(s) 267, 361
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BsuRI GGCC 2 cut(s) 85, 556
BtsCI GGATG 3 cut(s) 58, 119, 326
BtsI GCAGTG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 250
CciI TCATGA 1 cut(s) 139
Csp6I GTAC 1 cut(s) 348
CviAII CATG 3 cut(s) 49, 140, 545
CviJI RGCY 8 cut(s) 47, 55, 85, 228, 258, 308, 322, 556
CviKI_1 RGCY 8 cut(s) 47, 55, 85, 228, 258, 308, 322, 556
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 1 cut(s) 590
DpnI GATC 4 cut(s) 138, 363, 417, 585
DpnII GATC 4 cut(s) 136, 361, 415, 583
Eco130I CCWWGG 2 cut(s) 393, 450
EcoRI GAATTC 1 cut(s) 210
EcoRII CCWGG 3 cut(s) 22, 191, 205
EcoT14I CCWWGG 2 cut(s) 393, 450
EcoT22I ATGCAT 1 cut(s) 502
ErhI CCWWGG 2 cut(s) 393, 450
FaeI CATG 3 cut(s) 52, 143, 548
FaiI YATR 5 cut(s) 50, 141, 498, 542, 546
FaqI GGGAC 2 cut(s) 116, 167
FatI CATG 3 cut(s) 48, 139, 544
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 256, 375
FokI GGATG 3 cut(s) 45, 106, 313
Fsp4HI GCNGC 2 cut(s) 256, 375
FspBI CTAG 1 cut(s) 345
GluI GCNGC 2 cut(s) 256, 375
GsuI CTGGAG 1 cut(s) 6
HaeIII GGCC 2 cut(s) 85, 556
Hin1II CATG 3 cut(s) 52, 143, 548
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 2 cut(s) 5, 146
HphI GGTGA 4 cut(s) 93, 252, 293, 587
Hpy188I TCNGA 3 cut(s) 312, 357, 552
Hpy188III TCNNGA 4 cut(s) 75, 140, 459, 609
HpyAV CCTTC 3 cut(s) 75, 114, 265
HpyCH4III ACNGT 1 cut(s) 599
HpyCH4V TGCA 4 cut(s) 237, 255, 500, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 305
HpyF3I CTNAG 1 cut(s) 590
Hsp92II CATG 3 cut(s) 52, 143, 548
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 4 cut(s) 136, 361, 415, 583
LmnI GCTCC 1 cut(s) 313
Lsp1109I GCAGC 2 cut(s) 267, 361
LweI GCATC 1 cut(s) 509
MaeI CTAG 1 cut(s) 345
MaeIII GTNAC 2 cut(s) 470, 593
MalI GATC 4 cut(s) 138, 363, 417, 585
MbiI CCGCTC 1 cut(s) 299
MboI GATC 4 cut(s) 136, 361, 415, 583
MboII GAAGA 8 cut(s) 57, 60, 90, 253, 413, 419, 422, 425
MfeI CAATTG 1 cut(s) 232
MflI RGATCY 1 cut(s) 361
MluCI AATT 2 cut(s) 210, 232
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 8 cut(s) 19, 82, 297, 334, 391, 546, 580, 583
Mph1103I ATGCAT 1 cut(s) 502
MroXI GAANNNNTTC 1 cut(s) 201
MseI TTAA 1 cut(s) 126
MspR9I CCNGG 3 cut(s) 24, 193, 207
MunI CAATTG 1 cut(s) 232
MvaI CCWGG 3 cut(s) 24, 193, 207
MwoI GCNNNNNNNGC 2 cut(s) 234, 305
NdeII GATC 4 cut(s) 136, 361, 415, 583
NlaIII CATG 3 cut(s) 52, 143, 548
NmuCI GTSAC 2 cut(s) 470, 593
NsiI ATGCAT 1 cut(s) 502
NspI RCATGY 1 cut(s) 548
PagI TCATGA 1 cut(s) 139
PciI ACATGT 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 176
PfoI TCCNGGA 1 cut(s) 205
PkrI GCNGC 2 cut(s) 257, 376
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PscI ACATGT 1 cut(s) 544
Psp6I CCWGG 3 cut(s) 22, 191, 205
PspGI CCWGG 3 cut(s) 22, 191, 205
PstI CTGCAG 1 cut(s) 257
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 256, 375
Sau3AI GATC 4 cut(s) 136, 361, 415, 583
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 24, 193, 207
SetI ASST 9 cut(s) 57, 106, 230, 260, 276, 310, 456, 479, 572
SfaNI GCATC 1 cut(s) 509
SfcI CTRYAG 1 cut(s) 253
SpeI ACTAGT 1 cut(s) 344
Sse9I AATT 2 cut(s) 210, 232
SsiI CCGC 1 cut(s) 297
SspI AATATT 2 cut(s) 39, 422
SspMI CTAG 1 cut(s) 345
StyD4I CCNGG 3 cut(s) 22, 191, 205
StyI CCWWGG 2 cut(s) 393, 450
TaaI ACNGT 1 cut(s) 599
TaqI TCGA 1 cut(s) 76
TasI AATT 2 cut(s) 210, 232
TatI WGTACW 1 cut(s) 347
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 257
TseFI GTSAC 2 cut(s) 470, 593
TseI GCWGC 2 cut(s) 255, 374
Tsp45I GTSAC 2 cut(s) 470, 593
TspDTI ATGAA 4 cut(s) 65, 96, 261, 420
TspRI CASTG 1 cut(s) 257
Van91I CCANNNNNTGG 1 cut(s) 176
XapI RAATTY 1 cut(s) 210
XceI RCATGY 1 cut(s) 548
XmnI GAANNNNTTC 1 cut(s) 201
XspI CTAG 1 cut(s) 345
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.