Rmu_sc0010417.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010417.1
OG0014098
Physical Location & Seq
Forward (+)
657 .. 1274
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010417.1_g000001.1.cds

Sequence Viewer

Length: 618 bp
atggagtcctcatcagcaactccaggcagaaacacagtatttccagccatgaagttacatccatcttcttcctctccaagacggccattttctttttcaccttcatcttttgtatcatcctttaatgtccctgatcatgatgattcccctgccaccaccccgtttctattttctggtgtcccattttcctgggaacattttcctggaattccaaagaaacaaagcttcaattgcaagaagaatgaacactgcagctcaccatcattgaaggttctcccattgcctcctacaactgcacatcaagctccgaaaaagaagccctcatccaactcaaagcagactagtacatttccgaaagatccttttgttgctgctttagttgagtgttccaaggaggaagatgaagaagaagatcaatattccaagaacaatggtcaatggagtgccaaggtatcaagaagtgtaagtgacaggtttggatttgtcaatctttatgcatcgtcgtgtaaaagaagttgtgcagtttctcaatctatcatacatgttccgaggccgctcagtagaacctcctctaactacgatctacttagtcaccgttcccgttcccgttcccgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

205

Amino Acids

22.71

Weight (kDa)

9.58

Isoelectric Point (pI)

87.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22680 AT1G71970
fragaria_vesca FvH4_2g11630
malus_domestica MD05G1042300.v1.1
prunus_persica Prupe.8G058900_v2.0.a1
pyrus_communis pycom05g03490 pycom10g03480
rosa_chinensis RchiOBHm_Chr6g0270871
rosa_laevigata RLG00000013763
rosa_multiflora Rmu_sc0010417.1_g000001
rosa_roxburghii Rroxscaffold_3G00238570 Rroxscaffold_7G00197560
rosa_samantha Rh6AG176400 Rh6BG179800 Rh6CG175800 Rh6DG168100
rosa_wichuraiana Rw6G015030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 556
AciI CCGC 1 cut(s) 554
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 1 cut(s) 207
AfaI GTAC 1 cut(s) 346
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 2 cut(s) 229, 268
AhlI ACTAGT 1 cut(s) 341
AjnI CCWGG 3 cut(s) 22, 188, 202
AluBI AGCT 3 cut(s) 225, 255, 305
AluI AGCT 3 cut(s) 225, 255, 305
AlwI GGATC 1 cut(s) 353
AoxI GGCC 2 cut(s) 83, 551
ApeKI GCWGC 2 cut(s) 252, 371
ApoI RAATTY 1 cut(s) 207
Asp700I GAANNNNTTC 1 cut(s) 198
AsuHPI GGTGA 3 cut(s) 90, 249, 584
BbvI GCAGC 2 cut(s) 264, 358
BccI CCATC 2 cut(s) 70, 268
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 3 cut(s) 24, 190, 204
BclI TGATCA 1 cut(s) 133
BcuI ACTAGT 1 cut(s) 341
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 250
BisI GCNGC 3 cut(s) 253, 372, 554
BlsI GCNGC 3 cut(s) 254, 373, 555
Bme1390I CCNGG 3 cut(s) 24, 190, 204
BmrFI CCNGG 3 cut(s) 24, 190, 204
BmsI GCATC 1 cut(s) 506
BpmI CTGGAG 1 cut(s) 6
BsaJI CCNNGG 4 cut(s) 189, 390, 447, 548
Bse3DI GCAATG 1 cut(s) 278
BseBI CCWGG 3 cut(s) 24, 190, 204
BseDI CCNNGG 4 cut(s) 189, 390, 447, 548
BseGI GGATG 3 cut(s) 58, 116, 323
BseMI GCAATG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 571
BseRI GAGGAG 1 cut(s) 559
BseXI GCAGC 2 cut(s) 264, 358
BsgI GTGCAG 2 cut(s) 279, 540
BshFI GGCC 2 cut(s) 85, 553
BslFI GGGAC 2 cut(s) 113, 164
BsmFI GGGAC 2 cut(s) 113, 164
BsnI GGCC 2 cut(s) 85, 553
Bsp143I GATC 4 cut(s) 133, 358, 412, 580
BspACI CCGC 1 cut(s) 554
BspANI GGCC 2 cut(s) 85, 553
BspCNI CTCAG 1 cut(s) 570
BspHI TCATGA 1 cut(s) 136
BspMAI CTGCAG 1 cut(s) 254
BspPI GGATC 1 cut(s) 353
BsrBI CCGCTC 1 cut(s) 556
BsrDI GCAATG 1 cut(s) 278
BssECI CCNNGG 4 cut(s) 189, 390, 447, 548
BssMI GATC 4 cut(s) 133, 358, 412, 580
BssT1I CCWWGG 2 cut(s) 390, 447
Bst2UI CCWGG 3 cut(s) 24, 190, 204
Bst4CI ACNGT 2 cut(s) 37, 596
BstDEI CTNAG 2 cut(s) 557, 587
BstF5I GGATG 3 cut(s) 58, 116, 323
BstKTI GATC 4 cut(s) 136, 361, 415, 583
BstMBI GATC 4 cut(s) 133, 358, 412, 580
BstMWI GCNNNNNNNGC 2 cut(s) 231, 302
BstNI CCWGG 3 cut(s) 24, 190, 204
BstNSI RCATGY 1 cut(s) 545
BstSCI CCNGG 3 cut(s) 22, 188, 202
BstSFI CTRYAG 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 264, 358
BstX2I RGATCY 1 cut(s) 358
BstXI CCANNNNNNTGG 1 cut(s) 189
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 2 cut(s) 85, 553
BtsCI GGATG 3 cut(s) 58, 116, 323
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 247
CciI TCATGA 1 cut(s) 136
Csp6I GTAC 1 cut(s) 345
CviAII CATG 3 cut(s) 49, 137, 542
CviJI RGCY 7 cut(s) 47, 85, 225, 255, 305, 319, 553
CviKI_1 RGCY 7 cut(s) 47, 85, 225, 255, 305, 319, 553
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 2 cut(s) 557, 587
DpnI GATC 4 cut(s) 135, 360, 414, 582
DpnII GATC 4 cut(s) 133, 358, 412, 580
EaeI YGGCCR 1 cut(s) 83
Eco130I CCWWGG 2 cut(s) 390, 447
EcoRI GAATTC 1 cut(s) 207
EcoRII CCWGG 3 cut(s) 22, 188, 202
EcoT14I CCWWGG 2 cut(s) 390, 447
EcoT22I ATGCAT 1 cut(s) 499
ErhI CCWWGG 2 cut(s) 390, 447
FaeI CATG 3 cut(s) 52, 140, 545
FaiI YATR 5 cut(s) 50, 138, 495, 539, 543
FaqI GGGAC 2 cut(s) 113, 164
FatI CATG 3 cut(s) 48, 136, 541
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 3 cut(s) 253, 372, 554
FokI GGATG 3 cut(s) 45, 103, 310
Fsp4HI GCNGC 3 cut(s) 253, 372, 554
FspBI CTAG 1 cut(s) 342
GluI GCNGC 3 cut(s) 253, 372, 554
GsuI CTGGAG 1 cut(s) 6
HaeIII GGCC 2 cut(s) 85, 553
Hin1II CATG 3 cut(s) 52, 140, 545
HindIII AAGCTT 1 cut(s) 223
HinfI GANTC 2 cut(s) 5, 143
HphI GGTGA 3 cut(s) 90, 249, 584
Hpy188I TCNGA 3 cut(s) 309, 354, 549
Hpy188III TCNNGA 3 cut(s) 137, 456, 612
Hpy99I CGWCG 1 cut(s) 505
HpyAV CCTTC 2 cut(s) 111, 262
HpyCH4III ACNGT 2 cut(s) 37, 596
HpyCH4V TGCA 5 cut(s) 234, 252, 296, 497, 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 302
HpyF3I CTNAG 2 cut(s) 557, 587
Hsp92II CATG 3 cut(s) 52, 140, 545
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 4 cut(s) 133, 358, 412, 580
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 2 cut(s) 264, 358
LweI GCATC 1 cut(s) 506
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 3 cut(s) 54, 467, 590
MalI GATC 4 cut(s) 135, 360, 414, 582
MbiI CCGCTC 1 cut(s) 556
MboI GATC 4 cut(s) 133, 358, 412, 580
MboII GAAGA 7 cut(s) 57, 60, 250, 410, 416, 419, 422
MfeI CAATTG 1 cut(s) 229
MflI RGATCY 1 cut(s) 358
MluCI AATT 2 cut(s) 207, 229
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 8 cut(s) 19, 82, 294, 331, 388, 543, 577, 580
Mph1103I ATGCAT 1 cut(s) 499
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 502
MspR9I CCNGG 3 cut(s) 24, 190, 204
MunI CAATTG 1 cut(s) 229
MvaI CCWGG 3 cut(s) 24, 190, 204
MwoI GCNNNNNNNGC 2 cut(s) 231, 302
NdeII GATC 4 cut(s) 133, 358, 412, 580
NlaIII CATG 3 cut(s) 52, 140, 545
NmuCI GTSAC 2 cut(s) 467, 590
NsiI ATGCAT 1 cut(s) 499
NspI RCATGY 1 cut(s) 545
PagI TCATGA 1 cut(s) 136
PciI ACATGT 1 cut(s) 541
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 143
PfoI TCCNGGA 1 cut(s) 202
PkrI GCNGC 3 cut(s) 254, 373, 555
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PscI ACATGT 1 cut(s) 541
Psp6I CCWGG 3 cut(s) 22, 188, 202
PspGI CCWGG 3 cut(s) 22, 188, 202
PstI CTGCAG 1 cut(s) 254
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 502
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 3 cut(s) 253, 372, 554
Sau3AI GATC 4 cut(s) 133, 358, 412, 580
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 24, 190, 204
SetI ASST 8 cut(s) 103, 227, 257, 273, 307, 453, 476, 569
SfaNI GCATC 1 cut(s) 506
SfcI CTRYAG 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 502
SpeI ACTAGT 1 cut(s) 341
Sse9I AATT 2 cut(s) 207, 229
SsiI CCGC 1 cut(s) 554
SspI AATATT 1 cut(s) 419
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 3 cut(s) 22, 188, 202
StyI CCWWGG 2 cut(s) 390, 447
TaaI ACNGT 2 cut(s) 37, 596
TasI AATT 2 cut(s) 207, 229
TatI WGTACW 1 cut(s) 344
TauI GCSGC 1 cut(s) 556
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 254
TseFI GTSAC 2 cut(s) 467, 590
TseI GCWGC 2 cut(s) 252, 371
Tsp45I GTSAC 2 cut(s) 467, 590
TspDTI ATGAA 4 cut(s) 65, 93, 258, 417
TspRI CASTG 1 cut(s) 254
XapI RAATTY 1 cut(s) 207
XceI RCATGY 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 1 cut(s) 342
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.