Prupe.8G058900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0014098
Physical Location & Seq
Reverse (-)
7590021 .. 7590725
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G058900.1

Sequence Viewer

Length: 705 bp
ATGGAGTCTTCAGCAACTGATTTAAGTGGCGGCCATGACCAAATTGTCTCCAAAAAATATAACACTTTATTTCCAGCCATGAACAAGCATCGATTTTCTTCTCGACGGACACCATCATTTTCTTCCTCCTCCTCATCATCCTTCTCCTCGTGTTCTTCATCTTTTTTATCATCGTCATCCTGTAATCCTGATCTTCATGATCCTTCTCCTCTTAGTCCGGCCACCCCACTTCGATTTTCCGGCGTCCCATTTTCTTGGGAACATTTTCCCGGAATCCCAAAGAAACTAAACAGCAGCAAGAAGGAATTATATTCCTCATTGAAGCGTCTCCCACTGCCTCCTCCCACCACTACCACTAAAAGTACACAAAAACCCTCGAAAAAGTTCATCTTGGATAACATTGGGGTCAATGTGAGGCACAAAAACCCTAGGGGACATTCTAGTGATTTCGCAAAGGATCCTTTCTTTGCTGCAATGGTTGAGTGTTCTAAAGATGCTCATGATGACGATGAAGAAGAAGAAGAAGAAGAATCAAATGCTAGCTTTTCAAGTGGTGCCAAGGTCTCAAGGAGTTCAAGTGAGAGGTTCGGATTTGTCAATCTTTATACATCTTGTAAGAGAACTTGTGCAGTTTCTGAATCCATCATACATCTTCCAAGGCCAAGTAGAACTTCTTATGATCTGATCAATCGCCTATCCCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

235

Amino Acids

25.87

Weight (kDa)

9.08

Isoelectric Point (pI)

74.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22680 AT1G71970
fragaria_vesca FvH4_2g11630
malus_domestica MD05G1042300.v1.1
prunus_persica Prupe.8G058900_v2.0.a1
pyrus_communis pycom05g03490 pycom10g03480
rosa_chinensis RchiOBHm_Chr6g0270871
rosa_laevigata RLG00000013763
rosa_multiflora Rmu_sc0010417.1_g000001
rosa_roxburghii Rroxscaffold_3G00238570 Rroxscaffold_7G00197560
rosa_samantha Rh6AG176400 Rh6BG179800 Rh6CG175800 Rh6DG168100
rosa_wichuraiana Rw6G015030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 554
AciI CCGC 1 cut(s) 30
AclWI GGATC 3 cut(s) 194, 452, 465
AcoI YGGCCR 2 cut(s) 31, 219
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 1 cut(s) 364
AgsI TTSAA 3 cut(s) 322, 549, 576
AjuI GAANNNNNNNTTGG 2 cut(s) 655, 687
AluBI AGCT 1 cut(s) 543
AluI AGCT 1 cut(s) 543
Alw26I GTCTC 3 cut(s) 52, 332, 568
AlwI GGATC 3 cut(s) 194, 452, 465
AlwNI CAGNNNCTG 2 cut(s) 17, 635
AoxI GGCC 3 cut(s) 31, 219, 659
ApeKI GCWGC 2 cut(s) 294, 470
Asp700I GAANNNNTTC 2 cut(s) 264, 383
AspA2I CCTAGG 1 cut(s) 428
AsuC2I CCSGG 1 cut(s) 270
AsuNHI GCTAGC 1 cut(s) 539
AvrII CCTAGG 1 cut(s) 428
BamHI GGATCC 1 cut(s) 457
BanI GGYRCC 1 cut(s) 554
BauI CACGAG 1 cut(s) 148
BbvI GCAGC 2 cut(s) 306, 457
BccI CCATC 2 cut(s) 121, 650
BclI TGATCA 1 cut(s) 684
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 3 cut(s) 52, 332, 568
BfaI CTAG 3 cut(s) 429, 441, 540
BisI GCNGC 3 cut(s) 31, 295, 471
BlnI CCTAGG 1 cut(s) 428
BlsI GCNGC 3 cut(s) 32, 296, 472
Bme1390I CCNGG 1 cut(s) 270
BmiI GGNNCC 2 cut(s) 459, 556
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 2 cut(s) 97, 484
BmtI GCTAGC 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 550
BpuMI CCSGG 1 cut(s) 270
Bsa29I ATCGAT 1 cut(s) 91
BsaHI GRCGYC 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 568
BsaJI CCNNGG 3 cut(s) 428, 558, 656
BsaXI ACNNNNNCTCC 2 cut(s) 562, 592
Bse3DI GCAATG 1 cut(s) 480
BseCI ATCGAT 1 cut(s) 91
BseDI CCNNGG 3 cut(s) 428, 558, 656
BseGI GGATG 2 cut(s) 137, 176
BseMI GCAATG 1 cut(s) 480
BseRI GAGGAG 5 cut(s) 118, 121, 136, 198, 330
BseXI GCAGC 2 cut(s) 306, 457
BsgI GTGCAG 1 cut(s) 648
BshFI GGCC 3 cut(s) 33, 221, 661
BshNI GGYRCC 1 cut(s) 554
BshVI ATCGAT 1 cut(s) 91
BsiSI CCGG 3 cut(s) 218, 240, 270
BslFI GGGAC 2 cut(s) 230, 447
BsmAI GTCTC 3 cut(s) 52, 332, 568
BsmBI CGTCTC 1 cut(s) 332
BsmFI GGGAC 2 cut(s) 230, 447
BsnI GGCC 3 cut(s) 33, 221, 661
Bso31I GGTCTC 1 cut(s) 568
Bsp143I GATC 5 cut(s) 190, 199, 457, 679, 684
BspACI CCGC 1 cut(s) 30
BspANI GGCC 3 cut(s) 33, 221, 661
BspDI ATCGAT 1 cut(s) 91
BspHI TCATGA 2 cut(s) 196, 499
BspLI GGNNCC 2 cut(s) 459, 556
BspOI GCTAGC 1 cut(s) 543
BspPI GGATC 3 cut(s) 194, 452, 465
BspT107I GGYRCC 1 cut(s) 554
BspTNI GGTCTC 1 cut(s) 568
BsrDI GCAATG 1 cut(s) 480
BssECI CCNNGG 3 cut(s) 428, 558, 656
BssMI GATC 5 cut(s) 190, 199, 457, 679, 684
BssNI GRCGYC 1 cut(s) 243
BssSI CACGAG 1 cut(s) 148
BssT1I CCWWGG 3 cut(s) 428, 558, 656
Bst2BI CACGAG 1 cut(s) 148
BstACI GRCGYC 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 541
BstDEI CTNAG 1 cut(s) 212
BstF5I GGATG 2 cut(s) 137, 176
BstKTI GATC 5 cut(s) 193, 202, 460, 682, 687
BstMAI GTCTC 3 cut(s) 52, 332, 568
BstMBI GATC 5 cut(s) 190, 199, 457, 679, 684
BstSCI CCNGG 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 306, 457
BstX2I RGATCY 1 cut(s) 457
BstXI CCANNNNNNTGG 1 cut(s) 255
BstYI RGATCY 1 cut(s) 457
Bsu15I ATCGAT 1 cut(s) 91
BsuRI GGCC 3 cut(s) 33, 221, 661
BsuTUI ATCGAT 1 cut(s) 91
BtsCI GGATG 2 cut(s) 137, 176
BtsI GCAGTG 1 cut(s) 332
BtsIMutI CAGTG 1 cut(s) 332
Cac8I GCNNGC 1 cut(s) 541
CaiI CAGNNNCTG 2 cut(s) 17, 635
CciI TCATGA 2 cut(s) 196, 499
ClaI ATCGAT 1 cut(s) 91
CseI GACGC 2 cut(s) 232, 314
Csp6I GTAC 1 cut(s) 363
CviAII CATG 4 cut(s) 35, 79, 197, 500
CviJI RGCY 5 cut(s) 33, 77, 221, 543, 661
CviKI_1 RGCY 5 cut(s) 33, 77, 221, 543, 661
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 1 cut(s) 212
DpnI GATC 5 cut(s) 192, 201, 459, 681, 686
DpnII GATC 5 cut(s) 190, 199, 457, 679, 684
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
EaeI YGGCCR 2 cut(s) 31, 219
Eco130I CCWWGG 3 cut(s) 428, 558, 656
Eco31I GGTCTC 1 cut(s) 568
EcoT14I CCWWGG 3 cut(s) 428, 558, 656
ErhI CCWWGG 3 cut(s) 428, 558, 656
Esp3I CGTCTC 1 cut(s) 332
FaeI CATG 4 cut(s) 38, 82, 200, 503
FaiI YATR 9 cut(s) 36, 60, 80, 198, 310, 501, 606, 647, 678
FalI AAGNNNNNCTT 4 cut(s) 374, 406, 655, 687
FaqI GGGAC 2 cut(s) 230, 447
FatI CATG 4 cut(s) 34, 78, 196, 499
FbaI TGATCA 1 cut(s) 684
Fnu4HI GCNGC 3 cut(s) 31, 295, 471
FokI GGATG 2 cut(s) 124, 163
Fsp4HI GCNGC 3 cut(s) 31, 295, 471
FspBI CTAG 3 cut(s) 429, 441, 540
GluI GCNGC 3 cut(s) 31, 295, 471
HaeIII GGCC 3 cut(s) 33, 221, 661
HapII CCGG 3 cut(s) 218, 240, 270
HgaI GACGC 2 cut(s) 232, 314
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 4 cut(s) 38, 82, 200, 503
HinfI GANTC 4 cut(s) 5, 273, 530, 638
HpaII CCGG 3 cut(s) 218, 240, 270
Hpy166II GTNNAC 1 cut(s) 365
Hpy188I TCNGA 3 cut(s) 590, 637, 684
Hpy188III TCNNGA 5 cut(s) 102, 188, 197, 500, 699
Hpy8I GTNNAC 1 cut(s) 365
Hpy99I CGWCG 1 cut(s) 108
HpyAV CCTTC 3 cut(s) 151, 213, 295
HpyCH4V TGCA 2 cut(s) 473, 629
HpyF3I CTNAG 1 cut(s) 212
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 4 cut(s) 38, 82, 200, 503
Ksp22I TGATCA 1 cut(s) 684
Kzo9I GATC 5 cut(s) 190, 199, 457, 679, 684
LpnPI CCDG 6 cut(s) 87, 193, 201, 231, 253, 283
Lsp1109I GCAGC 2 cut(s) 306, 457
LweI GCATC 2 cut(s) 97, 484
MaeI CTAG 3 cut(s) 429, 441, 540
MalI GATC 5 cut(s) 192, 201, 459, 681, 686
MboI GATC 5 cut(s) 190, 199, 457, 679, 684
MflI RGATCY 1 cut(s) 457
MluCI AATT 2 cut(s) 42, 305
MlyI GAGTC 1 cut(s) 14
MroXI GAANNNNTTC 2 cut(s) 264, 383
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 441
MspI CCGG 3 cut(s) 218, 240, 270
MspR9I CCNGG 1 cut(s) 270
NciI CCSGG 1 cut(s) 270
NdeII GATC 5 cut(s) 190, 199, 457, 679, 684
NheI GCTAGC 1 cut(s) 539
NlaIII CATG 4 cut(s) 38, 82, 200, 503
NlaIV GGNNCC 2 cut(s) 459, 556
PagI TCATGA 2 cut(s) 196, 499
PcsI WCGNNNNNNNCGW 1 cut(s) 697
PdmI GAANNNNTTC 2 cut(s) 264, 383
PfeI GAWTC 3 cut(s) 273, 530, 638
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 3 cut(s) 32, 296, 472
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 459, 556
PstNI CAGNNNCTG 2 cut(s) 17, 635
PsuI RGATCY 1 cut(s) 457
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
RseI CAYNNNNRTG 1 cut(s) 441
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 3 cut(s) 31, 295, 471
Sau3AI GATC 5 cut(s) 190, 199, 457, 679, 684
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 270
SetI ASST 3 cut(s) 545, 564, 587
SfaNI GCATC 2 cut(s) 97, 484
SmiMI CAYNNNNRTG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 565
SmoI CTYRAG 1 cut(s) 565
Sse9I AATT 2 cut(s) 42, 305
SsiI CCGC 1 cut(s) 30
SspMI CTAG 3 cut(s) 429, 441, 540
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 3 cut(s) 428, 558, 656
TaqI TCGA 4 cut(s) 91, 103, 232, 377
TasI AATT 2 cut(s) 42, 305
TatI WGTACW 1 cut(s) 362
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 3 cut(s) 273, 530, 638
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 339
TseI GCWGC 2 cut(s) 294, 470
TspDTI ATGAA 5 cut(s) 95, 147, 185, 376, 525
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 1 cut(s) 339
XmaJI CCTAGG 1 cut(s) 428
XmnI GAANNNNTTC 2 cut(s) 264, 383
XspI CTAG 3 cut(s) 429, 441, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.