Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0014098

Physical Location & Seq

Genomic Coordinates Reverse (-)

25985089 .. 25985868

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG168100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAGTCCCCATCAGCAACTCCAGGCAGAAACACAGTATTTCCAGCCATGAAGCTACATCCATCTTCTTCCTCTCCAAGACGGCCATTTTCTTTTTCACCTTCATCTTTTAATGTCCCTGATCATGATGATTCCCCTGCCACCACCCCGTTTCTATTTTCTGGTGTCCCATTTTCCTGGGAACAATTTCCTGGAATTCCAAAGAAACAAAGCTTCAATTGCAAGAAGAATGAACACTGCAGCTCACCATCATTGAAGGTTCTCCCATTGCCTCCTACAACTGCCCATCAAGCTCCGAAAAAGAAGCCCTCATCCAACTCAAAGCAGACTAGTACATTTCCGAAAGATCCTTTTGTTGCTGCTTTAGTTGAGTGTTCCAAGGAGGAAGATGAAGAAGAAGATCAATATTCCAAGAACAATGGTCAATGGAGTGCCAAGGTATCAAGAAGTCATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

152

Amino Acids

16.79

Weight (kDa)

8.44

Isoelectric Point (pI)

81.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22680 AT1G71970
fragaria_vesca	FvH4_2g11630
malus_domestica	MD05G1042300.v1.1
prunus_persica	Prupe.8G058900_v2.0.a1
pyrus_communis	pycom05g03490 pycom10g03480
rosa_chinensis	RchiOBHm_Chr6g0270871
rosa_laevigata	RLG00000013763
rosa_multiflora	Rmu_sc0010417.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238570 Rroxscaffold_7G00197560
rosa_samantha	Rh6AG176400 Rh6BG179800 Rh6CG175800 Rh6DG168100
rosa_wichuraiana	Rw6G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	341
AcoI	YGGCCR	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	195
AfaI	GTAC	1 cut(s)	334
AgsI	TTSAA	2 cut(s)	217, 256
AhlI	ACTAGT	1 cut(s)	329
AjnI	CCWGG	3 cut(s)	22, 176, 190
AluBI	AGCT	4 cut(s)	55, 213, 243, 293
AluI	AGCT	4 cut(s)	55, 213, 243, 293
AlwI	GGATC	1 cut(s)	341
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	240, 359
ApoI	RAATTY	1 cut(s)	195
Asp700I	GAANNNNTTC	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	90, 237
BbvI	GCAGC	2 cut(s)	252, 346
BccI	CCATC	4 cut(s)	19, 70, 256, 294
BceAI	ACGGC	1 cut(s)	98
BciT130I	CCWGG	3 cut(s)	24, 178, 192
BclI	TGATCA	1 cut(s)	121
BcuI	ACTAGT	1 cut(s)	329
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	238
BisI	GCNGC	2 cut(s)	241, 360
BlsI	GCNGC	2 cut(s)	242, 361
Bme1390I	CCNGG	3 cut(s)	24, 178, 192
BmrFI	CCNGG	3 cut(s)	24, 178, 192
BpmI	CTGGAG	1 cut(s)	6
BsaJI	CCNNGG	3 cut(s)	177, 378, 435
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	3 cut(s)	24, 178, 192
BseDI	CCNNGG	3 cut(s)	177, 378, 435
BseGI	GGATG	2 cut(s)	58, 311
BseMI	GCAATG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	252, 346
BshFI	GGCC	1 cut(s)	85
BslFI	GGGAC	2 cut(s)	101, 152
BsmFI	GGGAC	2 cut(s)	101, 152
BsnI	GGCC	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	121, 346, 400
BspANI	GGCC	1 cut(s)	85
BspHI	TCATGA	2 cut(s)	124, 451
BspMAI	CTGCAG	1 cut(s)	242
BspPI	GGATC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	266
BssECI	CCNNGG	3 cut(s)	177, 378, 435
BssMI	GATC	3 cut(s)	121, 346, 400
BssT1I	CCWWGG	2 cut(s)	378, 435
Bst2UI	CCWGG	3 cut(s)	24, 178, 192
Bst4CI	ACNGT	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	58, 311
BstKTI	GATC	3 cut(s)	124, 349, 403
BstMBI	GATC	3 cut(s)	121, 346, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 290
BstNI	CCWGG	3 cut(s)	24, 178, 192
BstSCI	CCNGG	3 cut(s)	22, 176, 190
BstSFI	CTRYAG	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	252, 346
BstX2I	RGATCY	1 cut(s)	346
BstXI	CCANNNNNNTGG	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	58, 311
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	235
CciI	TCATGA	2 cut(s)	124, 451
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	3 cut(s)	49, 125, 452
CviJI	RGCY	7 cut(s)	47, 55, 85, 213, 243, 293, 307
CviKI_1	RGCY	7 cut(s)	47, 55, 85, 213, 243, 293, 307
CviQI	GTAC	1 cut(s)	333
DpnI	GATC	3 cut(s)	123, 348, 402
DpnII	GATC	3 cut(s)	121, 346, 400
EaeI	YGGCCR	1 cut(s)	83
Eco130I	CCWWGG	2 cut(s)	378, 435
EcoRI	GAATTC	1 cut(s)	195
EcoRII	CCWGG	3 cut(s)	22, 176, 190
EcoT14I	CCWWGG	2 cut(s)	378, 435
ErhI	CCWWGG	2 cut(s)	378, 435
FaeI	CATG	3 cut(s)	52, 128, 455
FaiI	YATR	3 cut(s)	50, 126, 453
FaqI	GGGAC	2 cut(s)	101, 152
FatI	CATG	3 cut(s)	48, 124, 451
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	2 cut(s)	241, 360
FokI	GGATG	2 cut(s)	45, 298
Fsp4HI	GCNGC	2 cut(s)	241, 360
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	2 cut(s)	241, 360
GsuI	CTGGAG	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	85
Hin1II	CATG	3 cut(s)	52, 128, 455
HindIII	AAGCTT	1 cut(s)	211
HinfI	GANTC	2 cut(s)	5, 131
HphI	GGTGA	2 cut(s)	90, 237
Hpy188I	TCNGA	2 cut(s)	297, 342
Hpy188III	TCNNGA	3 cut(s)	125, 444, 452
HpyAV	CCTTC	2 cut(s)	111, 250
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	2 cut(s)	222, 240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 290
Hsp92II	CATG	3 cut(s)	52, 128, 455
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	121, 346, 400
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	2 cut(s)	252, 346
MaeI	CTAG	1 cut(s)	330
MalI	GATC	3 cut(s)	123, 348, 402
MboI	GATC	3 cut(s)	121, 346, 400
MboII	GAAGA	7 cut(s)	57, 60, 238, 398, 404, 407, 410
MfeI	CAATTG	1 cut(s)	217
MflI	RGATCY	1 cut(s)	346
MluCI	AATT	3 cut(s)	185, 195, 217
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	4 cut(s)	82, 282, 319, 376
MroXI	GAANNNNTTC	1 cut(s)	186
MseI	TTAA	1 cut(s)	111
MspR9I	CCNGG	3 cut(s)	24, 178, 192
MunI	CAATTG	1 cut(s)	217
MvaI	CCWGG	3 cut(s)	24, 178, 192
MwoI	GCNNNNNNNGC	2 cut(s)	219, 290
NdeII	GATC	3 cut(s)	121, 346, 400
NlaIII	CATG	3 cut(s)	52, 128, 455
PagI	TCATGA	2 cut(s)	124, 451
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	131
PfoI	TCCNGGA	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	242, 361
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	3 cut(s)	22, 176, 190
PspGI	CCWGG	3 cut(s)	22, 176, 190
PstI	CTGCAG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	2 cut(s)	241, 360
Sau3AI	GATC	3 cut(s)	121, 346, 400
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	3 cut(s)	24, 178, 192
SetI	ASST	7 cut(s)	57, 103, 215, 245, 261, 295, 441
SfcI	CTRYAG	1 cut(s)	238
SpeI	ACTAGT	1 cut(s)	329
Sse9I	AATT	3 cut(s)	185, 195, 217
SspI	AATATT	1 cut(s)	407
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	3 cut(s)	22, 176, 190
StyI	CCWWGG	2 cut(s)	378, 435
TaaI	ACNGT	1 cut(s)	37
TasI	AATT	3 cut(s)	185, 195, 217
TatI	WGTACW	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	242
TseI	GCWGC	2 cut(s)	240, 359
TspDTI	ATGAA	4 cut(s)	65, 93, 246, 405
TspRI	CASTG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	186
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.