Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005578

Physical Location & Seq

Genomic Coordinates Forward (+)

8395466 .. 8398387

Gene Structure 2922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCGACAGAGTCGTACGAAGACGCCATTAAAAGACTCGGAGAGCTTCTCAGTAAGAAATCGGATCTCGGGAACGTGGCAGCCGCAAAGATCAAGAAGTTAACGGATGAGTTAGAGGAACTTGATTCCAACAAGTTAGATGCCGTAGAACGAATCAAATCCGGATTTCTCCATTTCAAGACTAATAATTATGAGAAGAATCCTACTTTGTACAATTCACTTGCCAAGAGCCAGACCCCCAAGTTTTTGGTGTTTGCTTGTGCGGATTCACGAGTTAGTCCATCTCACATCTTGAATTTCCAACTTGGGGAAGCCTTCATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGACAAGACAAAGCACTCTAATGTTGGTGCGGCCCTTGAATATCCAATTACAGTCCTCAACGTGGAGAACATTCTTGTTATTGGACACAGCTGTTGTGGTGGAATAAAGGGACTCATGGCCATTGAAGATAATACAGCTCCCACTAAGACCGAGTTCATAGAAAACTGGATCCAGATCTGTGCACCGGCCAAGAACAGGATCAAGCAGGATTGTAAAGACCTAAGCTTTGAAGATCAGTGCACCAACTGTGAGAAGGAAGCCGTGAACGTGTCCTTGGGGAATCTTTTGTCTTACCCATTCGTGAGAGAAAGAGTGGTGAAGAACAAGCTTGCCATAAGAGGAGCTCACTATGATTTCGTAAAAGGAACGTTTGATCTTTGGGAACTTGACTTCAAGACTACCCCTGCCTTTGCCTTGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010033 GO:0010037 GO:0010119 GO:0010319 GO:0015979 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055035 GO:0065007 GO:0071944 GO:0072347 GO:0098542 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

258

Amino Acids

28.83

Weight (kDa)

6.54

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	83 - 241	3e-43	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23730 AT1G23730 AT1G70410 AT1G70410 AT1G70410
fragaria_vesca	FvH4_4g30530 FvH4_4g34390 FvH4_4g34390
malus_domestica	MD13G1092500.v1.1 MD16G1093300.v1.1
prunus_persica	Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1
pyrus_communis	pycom13g08030 pycom16g07930
rosa_chinensis	RchiOBHm_Chr4g0443811
rosa_laevigata	RLG00000005886
rosa_multiflora	Rmu_sc0005632.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384380
rosa_rugosa	Rorug04G0347600 Rorug04G0347600 Rorug04G0347600 Rorug04G0347600
rosa_samantha	Rh4AG407700 Rh4BG418700 Rh4CG432800
rosa_wichuraiana	Rw4G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	343
AccI	GTMKAC	1 cut(s)	5
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	3 cut(s)	84, 263, 383
AclI	AACGTT	1 cut(s)	722
AclWI	GGATC	4 cut(s)	72, 517, 530, 560
AcoI	YGGCCR	2 cut(s)	471, 540
AcsI	RAATTY	1 cut(s)	295
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	2 cut(s)	17, 212
AfiI	CCNNNNNNNGG	3 cut(s)	307, 415, 549
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	6 cut(s)	178, 295, 392, 479, 584, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	611, 643
AluBI	AGCT	6 cut(s)	46, 444, 491, 579, 682, 698
AluI	AGCT	6 cut(s)	46, 444, 491, 579, 682, 698
Alw21I	GWGCWC	3 cut(s)	538, 596, 700
Alw44I	GTGCAC	2 cut(s)	534, 592
AlwI	GGATC	4 cut(s)	72, 517, 530, 560
Ama87I	CYCGRG	1 cut(s)	68
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	3 cut(s)	384, 471, 540
ApaLI	GTGCAC	2 cut(s)	534, 592
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	295
ArsI	GACNNNNNNTTYG	2 cut(s)	563, 595
AspS9I	GGNCC	1 cut(s)	385
AsuHPI	GGTGA	1 cut(s)	682
AvaI	CYCGRG	1 cut(s)	68
BaeGI	GKGCMC	2 cut(s)	538, 596
BalI	TGGCCA	1 cut(s)	473
BamHI	GGATCC	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	343
BanII	GRGCYC	1 cut(s)	700
BauI	CACGAG	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	3 cut(s)	538, 596, 700
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	2 cut(s)	128, 599
BglII	AGATCT	1 cut(s)	528
BisI	GCNGC	3 cut(s)	81, 84, 384
BlsI	GCNGC	3 cut(s)	82, 85, 385
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	2 cut(s)	345, 524
BmsI	GCATC	1 cut(s)	130
BpiI	GAAGAC	1 cut(s)	27
BplI	GAGNNNNNCTC	2 cut(s)	33, 65
Bpu10I	CCTNAGC	1 cut(s)	575
BsaBI	GATNNNNATC	1 cut(s)	527
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	627
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 415, 549
Bse118I	RCCGGY	1 cut(s)	538
Bse1I	ACTGG	1 cut(s)	524
Bse3DI	GCAATG	1 cut(s)	330
Bse8I	GATNNNNATC	1 cut(s)	527
BseAI	TCCGGA	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	527
BseLI	CCNNNNNNNGG	3 cut(s)	307, 415, 549
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	524
BseRI	GAGGAG	1 cut(s)	708
BseSI	GKGCMC	2 cut(s)	538, 596
BseXI	GCAGC	1 cut(s)	92
BshFI	GGCC	3 cut(s)	386, 473, 542
BshNI	GGYRCC	1 cut(s)	343
BsiHKAI	GWGCWC	3 cut(s)	538, 596, 700
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	162, 539
BsiWI	CGTACG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	3 cut(s)	307, 415, 549
BsmFI	GGGAC	1 cut(s)	477
BsnI	GGCC	3 cut(s)	386, 473, 542
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	3 cut(s)	538, 596, 700
Bsp13I	TCCGGA	1 cut(s)	161
Bsp1407I	TGTACA	1 cut(s)	210
Bsp143I	GATC	7 cut(s)	64, 90, 522, 528, 552, 586, 727
BspACI	CCGC	3 cut(s)	84, 263, 383
BspANI	GGCC	3 cut(s)	386, 473, 542
BspCNI	CTCAG	1 cut(s)	63
BspEI	TCCGGA	1 cut(s)	161
BspLI	GGNNCC	2 cut(s)	345, 524
BspPI	GGATC	4 cut(s)	72, 517, 530, 560
BspT107I	GGYRCC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	538
BsrGI	TGTACA	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	524
BssAI	RCCGGY	1 cut(s)	538
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	7 cut(s)	64, 90, 522, 528, 552, 586, 727
BssNI	GRCGYC	1 cut(s)	24
BssSI	CACGAG	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	627
Bst2BI	CACGAG	1 cut(s)	270
Bst4CI	ACNGT	2 cut(s)	406, 602
BstACI	GRCGYC	1 cut(s)	24
BstAUI	TGTACA	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	684
BstDEI	CTNAG	3 cut(s)	50, 498, 575
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	7 cut(s)	67, 93, 525, 531, 555, 589, 730
BstMBI	GATC	7 cut(s)	64, 90, 522, 528, 552, 586, 727
BstSLI	GKGCMC	2 cut(s)	538, 596
BstV1I	GCAGC	1 cut(s)	92
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	3 cut(s)	64, 522, 528
BstXI	CCANNNNNNTGG	1 cut(s)	247
BstYI	RGATCY	3 cut(s)	64, 522, 528
BsuRI	GGCC	3 cut(s)	386, 473, 542
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	596
Cac8I	GCNNGC	1 cut(s)	684
Cfr10I	RCCGGY	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	385
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	16, 211
CviAII	CATG	2 cut(s)	340, 469
CviQI	GTAC	2 cut(s)	16, 211
DdeI	CTNAG	3 cut(s)	50, 498, 575
DpnI	GATC	7 cut(s)	66, 92, 524, 530, 554, 588, 729
DpnII	GATC	7 cut(s)	64, 90, 522, 528, 552, 586, 727
EaeI	YGGCCR	2 cut(s)	471, 540
Ecl136II	GAGCTC	1 cut(s)	698
Eco130I	CCWWGG	1 cut(s)	627
Eco24I	GRGCYC	1 cut(s)	700
Eco53kI	GAGCTC	1 cut(s)	698
Eco88I	CYCGRG	1 cut(s)	68
EcoICRI	GAGCTC	1 cut(s)	698
EcoT14I	CCWWGG	1 cut(s)	627
EcoT38I	GRGCYC	1 cut(s)	700
ErhI	CCWWGG	1 cut(s)	627
FaeI	CATG	2 cut(s)	343, 472
FaiI	YATR	7 cut(s)	192, 341, 354, 470, 512, 689, 705
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	2 cut(s)	339, 468
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	81, 84, 384
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	700
Fsp4HI	GCNGC	3 cut(s)	81, 84, 384
GluI	GCNGC	3 cut(s)	81, 84, 384
HaeIII	GGCC	3 cut(s)	386, 473, 542
HapII	CCGG	2 cut(s)	162, 539
HgaI	GACGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	343, 472
HincII	GTYRAC	2 cut(s)	6, 102
HindII	GTYRAC	2 cut(s)	6, 102
HindIII	AAGCTT	2 cut(s)	577, 680
HinfI	GANTC	8 cut(s)	11, 36, 125, 153, 199, 266, 465, 634
HpaI	GTTAAC	1 cut(s)	102
HpaII	CCGG	2 cut(s)	162, 539
HphI	GGTGA	1 cut(s)	682
Hpy166II	GTNNAC	5 cut(s)	6, 102, 536, 594, 619
Hpy188I	TCNGA	2 cut(s)	41, 64
Hpy188III	TCNNGA	9 cut(s)	70, 94, 162, 178, 270, 292, 526, 655, 748
Hpy8I	GTNNAC	5 cut(s)	6, 102, 536, 594, 619
HpyAV	CCTTC	2 cut(s)	325, 601
HpyCH4III	ACNGT	2 cut(s)	406, 602
HpyCH4IV	ACGT	4 cut(s)	75, 414, 621, 722
HpyCH4V	TGCA	3 cut(s)	335, 536, 594
HpyF3I	CTNAG	3 cut(s)	50, 498, 575
HpySE526I	ACGT	4 cut(s)	75, 414, 621, 722
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	343, 472
Kpn2I	TCCGGA	1 cut(s)	161
KspAI	GTTAAC	1 cut(s)	102
Kzo9I	GATC	7 cut(s)	64, 90, 522, 528, 552, 586, 727
LmnI	GCTCC	2 cut(s)	496, 695
LpnPI	CCDG	8 cut(s)	175, 245, 505, 535, 539, 545, 552, 771
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	1 cut(s)	130
MaeII	ACGT	4 cut(s)	75, 414, 621, 722
MalI	GATC	7 cut(s)	66, 92, 524, 530, 554, 588, 729
MboI	GATC	7 cut(s)	64, 90, 522, 528, 552, 586, 727
MboII	GAAGA	5 cut(s)	32, 208, 491, 596, 685
MflI	RGATCY	3 cut(s)	64, 522, 528
MhlI	GDGCHC	3 cut(s)	538, 596, 700
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	4 cut(s)	187, 214, 295, 399
MluNI	TGGCCA	1 cut(s)	473
MlyI	GAGTC	3 cut(s)	20, 30, 459
MmeI	TCCRAC	2 cut(s)	153, 325
MnlI	CCTC	3 cut(s)	109, 419, 686
Mox20I	TGGCCA	1 cut(s)	473
MroI	TCCGGA	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	3 cut(s)	30, 101, 775
MslI	CAYNNNNRTG	1 cut(s)	372
Msp20I	TGGCCA	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	444
MspI	CCGG	2 cut(s)	162, 539
NdeII	GATC	7 cut(s)	64, 90, 522, 528, 552, 586, 727
NlaIII	CATG	2 cut(s)	343, 472
NlaIV	GGNNCC	2 cut(s)	345, 524
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PfeI	GAWTC	5 cut(s)	125, 153, 199, 266, 634
Pfl23II	CGTACG	1 cut(s)	15
PflFI	GACNNNGTC	1 cut(s)	10
PkrI	GCNGC	3 cut(s)	82, 85, 385
PleI	GAGTC	3 cut(s)	19, 30, 459
PpsI	GAGTC	3 cut(s)	19, 30, 459
Psp124BI	GAGCTC	1 cut(s)	700
Psp1406I	AACGTT	1 cut(s)	722
PspLI	CGTACG	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	345, 524
PspPI	GGNCC	1 cut(s)	385
PsuI	RGATCY	3 cut(s)	64, 522, 528
PsyI	GACNNNGTC	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	444
RsaI	GTAC	2 cut(s)	17, 212
RsaNI	GTAC	2 cut(s)	16, 211
RseI	CAYNNNNRTG	1 cut(s)	372
SacI	GAGCTC	1 cut(s)	700
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	30, 101, 775
SatI	GCNGC	3 cut(s)	81, 84, 384
Sau3AI	GATC	7 cut(s)	64, 90, 522, 528, 552, 586, 727
Sau96I	GGNCC	1 cut(s)	385
SchI	GAGTC	3 cut(s)	20, 30, 459
SduI	GDGCHC	3 cut(s)	538, 596, 700
SfaNI	GCATC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	372
Sse9I	AATT	4 cut(s)	187, 214, 295, 399
SsiI	CCGC	3 cut(s)	84, 263, 383
SstI	GAGCTC	1 cut(s)	700
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	2 cut(s)	406, 602
TaiI	ACGT	4 cut(s)	78, 417, 624, 725
TaqI	TCGA	1 cut(s)	5
TaqII	GACCGA	1 cut(s)	518
TasI	AATT	4 cut(s)	187, 214, 295, 399
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	2 cut(s)	86, 386
TfiI	GAWTC	5 cut(s)	125, 153, 199, 266, 634
Tru1I	TTAA	3 cut(s)	30, 101, 775
Tru9I	TTAA	3 cut(s)	30, 101, 775
TscAI	CASTG	1 cut(s)	596
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	307, 499
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	596
Tth111I	GACNNNGTC	1 cut(s)	10
VneI	GTGCAC	2 cut(s)	534, 592
XapI	RAATTY	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.