Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005578

Physical Location & Seq

Genomic Coordinates Reverse (-)

26533824 .. 26538437

Gene Structure 4614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G70410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCAACGGAATCGTACGAAGCCGCCATTAAAGGACTCAATGATCTTCTCAGTACGAAAGCGGATCTCGGAAACGTCGCCGCCGCGAAGATCAAAGCGTTGACGGCGGAGCTAAAGGAGCTTGACTCAAGCAATTCAGACGCAATTGAACGAATCAAGACCGGTTTTACTCAATTCAAAACCGAGAAATATTTGAAGAATAGTACTTTGTTCAATCATCTTGCCAAGACTCAGACCCCAAAGTTTCTGGTGTTTGCTTGCTCTGATTCTCGAGTTTGTCCATCTCACATCTTGAATTTCCAACCTGGTGAGGCTTTTGTTGTCAGAAACATAGCCAATATGGTTCCACCTTTTGACCAGAAGAGACACTCTGGAGTTGGCGCCGCCGTTGAATACGCAGTTGTACATCTCAAGGTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAGTGACTTCATTGAAAATTGGGTGAAGATAGGCGCATCAGCGAGGAACAAGATCAAGGAGGAACATAAAGACTTGAGCTACGATGATCAATGCAACAAGTGTGAGAAGGAAGCTGTGAACGTATCGCTTGGAAACTTGCTTTCGTACCCATTCGTGAGAGCTGAGGTGGTGAAGAACACACTTGCAATAAGAGGAGGTCACTACAATTTCGTCAAAGGAACGTTTGATCTCTGGGAGCTCGATTTCAAGACCACTCCTGCTTTTGCCTTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010033 GO:0010037 GO:0010119 GO:0010319 GO:0015979 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055035 GO:0065007 GO:0071944 GO:0072347 GO:0098542 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

258

Amino Acids

28.41

Weight (kDa)

6.66

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	105 - 263	2.5e-43	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23730 AT1G23730 AT1G70410 AT1G70410 AT1G70410
fragaria_vesca	FvH4_4g30530 FvH4_4g34390 FvH4_4g34390
malus_domestica	MD13G1092500.v1.1 MD16G1093300.v1.1
prunus_persica	Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1
pyrus_communis	pycom13g08030 pycom16g07930
rosa_chinensis	RchiOBHm_Chr4g0443811
rosa_laevigata	RLG00000005886
rosa_multiflora	Rmu_sc0005632.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384380
rosa_rugosa	Rorug04G0347600 Rorug04G0347600 Rorug04G0347600 Rorug04G0347600
rosa_samantha	Rh4AG407700 Rh4BG418700 Rh4CG432800
rosa_wichuraiana	Rw4G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	380
AccII	CGCG	1 cut(s)	86
AciI	CCGC	6 cut(s)	24, 62, 81, 84, 107, 384
AclI	AACGTT	1 cut(s)	722
AclWI	GGATC	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	295
AcyI	GRCGYC	1 cut(s)	381
AfaI	GTAC	5 cut(s)	17, 55, 205, 405, 647
AgeI	ACCGGT	1 cut(s)	161
AgsI	TTSAA	9 cut(s)	149, 178, 196, 214, 295, 392, 479, 515, 748
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	7 cut(s)	112, 121, 444, 579, 614, 662, 739
AluI	AGCT	7 cut(s)	112, 121, 444, 579, 614, 662, 739
Alw21I	GWGCWC	1 cut(s)	741
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	1 cut(s)	72
Ama87I	CYCGRG	1 cut(s)	270
AoxI	GGCC	1 cut(s)	436
ApeKI	GCWGC	2 cut(s)	444, 488
ApoI	RAATTY	1 cut(s)	295
AsiGI	ACCGGT	1 cut(s)	161
AspLEI	GCGC	2 cut(s)	383, 536
AsuHPI	GGTGA	4 cut(s)	320, 442, 535, 682
AvaI	CYCGRG	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	741
Bbv12I	GWGCWC	1 cut(s)	741
BbvCI	CCTCAGC	1 cut(s)	663
BbvI	GCAGC	2 cut(s)	431, 475
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	2 cut(s)	120, 371
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	306
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	358
BfoI	RGCGCY	1 cut(s)	384
BisI	GCNGC	6 cut(s)	24, 81, 84, 384, 445, 489
BlsI	GCNGC	6 cut(s)	25, 82, 85, 385, 446, 490
BmcAI	AGTACT	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	306
BmeT110I	CYCGRG	1 cut(s)	270
BmiI	GGNNCC	2 cut(s)	345, 382
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	2 cut(s)	475, 545
BoxI	GACNNNNGTC	1 cut(s)	469
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BpmI	CTGGAG	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	663
BpuEI	CTTGAG	3 cut(s)	112, 395, 595
BsaHI	GRCGYC	1 cut(s)	381
BsaWI	WCCGGW	1 cut(s)	161
Bse118I	RCCGGY	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	306
BseMII	CTCAG	3 cut(s)	64, 245, 654
BseRI	GAGGAG	1 cut(s)	708
BseXI	GCAGC	2 cut(s)	431, 475
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	438
BshNI	GGYRCC	1 cut(s)	380
BshTI	ACCGGT	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	741
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	162
BsiWI	CGTACG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	477
BsmAI	GTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	477
BsnI	GGCC	1 cut(s)	438
BsoBI	CYCGRG	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp1407I	TGTACA	1 cut(s)	403
Bsp143I	GATC	6 cut(s)	43, 64, 90, 552, 586, 727
BspACI	CCGC	6 cut(s)	24, 62, 81, 84, 107, 384
BspANI	GGCC	1 cut(s)	438
BspCNI	CTCAG	3 cut(s)	63, 244, 655
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	2 cut(s)	345, 382
BspPI	GGATC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	380
BsrFI	RCCGGY	1 cut(s)	161
BsrGI	TGTACA	1 cut(s)	403
BssAI	RCCGGY	1 cut(s)	161
BssMI	GATC	6 cut(s)	43, 64, 90, 552, 586, 727
BssNI	GRCGYC	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	306
Bst6I	CTCTTC	1 cut(s)	356
BstACI	GRCGYC	1 cut(s)	381
BstAUI	TGTACA	1 cut(s)	403
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	3 cut(s)	50, 231, 663
BstFNI	CGCG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	2 cut(s)	383, 536
BstKTI	GATC	6 cut(s)	46, 67, 93, 555, 589, 730
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	6 cut(s)	43, 64, 90, 552, 586, 727
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 118, 444
BstNI	CCWGG	1 cut(s)	306
BstPAI	GACNNNNGTC	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	304
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	431, 475
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	438
Cac8I	GCNNGC	1 cut(s)	259
CfoI	GCGC	2 cut(s)	383, 536
Cfr10I	RCCGGY	1 cut(s)	161
CseI	GACGC	1 cut(s)	149
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	5 cut(s)	16, 54, 204, 404, 646
CspAI	ACCGGT	1 cut(s)	161
CviAII	CATG	1 cut(s)	469
CviQI	GTAC	5 cut(s)	16, 54, 204, 404, 646
DdeI	CTNAG	3 cut(s)	50, 231, 663
DinI	GGCGCC	1 cut(s)	382
DpnI	GATC	6 cut(s)	45, 66, 92, 554, 588, 729
DpnII	GATC	6 cut(s)	43, 64, 90, 552, 586, 727
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
EciI	GGCGGA	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	739
Eco24I	GRGCYC	1 cut(s)	741
Eco53kI	GAGCTC	1 cut(s)	739
Eco88I	CYCGRG	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	739
EcoRII	CCWGG	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	741
EgeI	GGCGCC	1 cut(s)	382
EheI	GGCGCC	1 cut(s)	382
FaeI	CATG	1 cut(s)	472
FaiI	YATR	5 cut(s)	332, 341, 441, 470, 567
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	1 cut(s)	468
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	6 cut(s)	24, 81, 84, 384, 445, 489
FriOI	GRGCYC	1 cut(s)	741
Fsp4HI	GCNGC	6 cut(s)	24, 81, 84, 384, 445, 489
GlaI	GCGC	2 cut(s)	382, 535
GluI	GCNGC	6 cut(s)	24, 81, 84, 384, 445, 489
GsuI	CTGGAG	1 cut(s)	393
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	438
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	2 cut(s)	383, 536
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	1 cut(s)	472
Hin6I	GCGC	2 cut(s)	381, 534
HinP1I	GCGC	2 cut(s)	381, 534
HincII	GTYRAC	1 cut(s)	102
HindII	GTYRAC	1 cut(s)	102
HinfI	GANTC	7 cut(s)	11, 36, 125, 153, 229, 266, 465
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	4 cut(s)	320, 442, 535, 682
Hpy166II	GTNNAC	2 cut(s)	102, 619
Hpy188I	TCNGA	5 cut(s)	71, 139, 234, 265, 326
Hpy188III	TCNNGA	6 cut(s)	157, 270, 292, 372, 655, 748
Hpy8I	GTNNAC	2 cut(s)	102, 619
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	601
HpyCH4IV	ACGT	3 cut(s)	75, 621, 722
HpyCH4V	TGCA	2 cut(s)	594, 686
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 118, 444
HpyF3I	CTNAG	3 cut(s)	50, 231, 663
HpySE526I	ACGT	3 cut(s)	75, 621, 722
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	1 cut(s)	472
HspAI	GCGC	2 cut(s)	381, 534
KasI	GGCGCC	1 cut(s)	380
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	6 cut(s)	43, 64, 90, 552, 586, 727
LmnI	GCTCC	3 cut(s)	109, 118, 736
LpnPI	CCDG	8 cut(s)	175, 233, 291, 318, 357, 371, 718, 771
Lsp1109I	GCAGC	2 cut(s)	431, 475
LweI	GCATC	2 cut(s)	475, 545
MabI	ACCWGGT	1 cut(s)	304
MaeII	ACGT	3 cut(s)	75, 621, 722
MaeIII	GTNAC	2 cut(s)	503, 698
MalI	GATC	6 cut(s)	45, 66, 92, 554, 588, 729
MboI	GATC	6 cut(s)	43, 64, 90, 552, 586, 727
MboII	GAAGA	7 cut(s)	38, 100, 208, 373, 491, 538, 685
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	741
MluCI	AATT	6 cut(s)	133, 144, 173, 295, 517, 706
Mly113I	GGCGCC	1 cut(s)	381
MlyI	GAGTC	4 cut(s)	30, 119, 223, 459
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	6 cut(s)	304, 537, 553, 658, 686, 689
MseI	TTAA	3 cut(s)	30, 459, 775
MslI	CAYNNNNRTG	1 cut(s)	428
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	306
MunI	CAATTG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	3 cut(s)	104, 118, 444
NarI	GGCGCC	1 cut(s)	381
NdeII	GATC	6 cut(s)	43, 64, 90, 552, 586, 727
NlaIII	CATG	1 cut(s)	472
NlaIV	GGNNCC	2 cut(s)	345, 382
NmuCI	GTSAC	2 cut(s)	503, 698
PaeR7I	CTCGAG	1 cut(s)	270
PfeI	GAWTC	3 cut(s)	11, 153, 266
Pfl23II	CGTACG	1 cut(s)	15
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	6 cut(s)	25, 82, 85, 385, 446, 490
PleI	GAGTC	4 cut(s)	30, 119, 223, 459
PluTI	GGCGCC	1 cut(s)	384
PpsI	GAGTC	4 cut(s)	30, 119, 223, 459
PshAI	GACNNNNGTC	1 cut(s)	469
Psp124BI	GAGCTC	1 cut(s)	741
Psp1406I	AACGTT	1 cut(s)	722
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspLI	CGTACG	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	345, 382
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	5 cut(s)	17, 55, 205, 405, 647
RsaNI	GTAC	5 cut(s)	16, 54, 204, 404, 646
RseI	CAYNNNNRTG	1 cut(s)	428
SacI	GAGCTC	1 cut(s)	741
SaqAI	TTAA	3 cut(s)	30, 459, 775
SatI	GCNGC	6 cut(s)	24, 81, 84, 384, 445, 489
Sau3AI	GATC	6 cut(s)	43, 64, 90, 552, 586, 727
ScaI	AGTACT	1 cut(s)	205
SchI	GAGTC	4 cut(s)	30, 119, 223, 459
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	741
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	2 cut(s)	475, 545
SfoI	GGCGCC	1 cut(s)	382
Sfr274I	CTCGAG	1 cut(s)	270
SlaI	CTCGAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	4 cut(s)	127, 270, 410, 574
SmoI	CTYRAG	4 cut(s)	127, 270, 410, 574
Sse9I	AATT	6 cut(s)	133, 144, 173, 295, 517, 706
SsiI	CCGC	6 cut(s)	24, 62, 81, 84, 107, 384
SspDI	GGCGCC	1 cut(s)	380
SspI	AATATT	1 cut(s)	191
SstI	GAGCTC	1 cut(s)	741
StyD4I	CCNGG	1 cut(s)	304
TaiI	ACGT	3 cut(s)	78, 624, 725
TaqI	TCGA	2 cut(s)	271, 741
TasI	AATT	6 cut(s)	133, 144, 173, 295, 517, 706
TatI	WGTACW	2 cut(s)	203, 403
TauI	GCSGC	4 cut(s)	26, 83, 86, 386
TfiI	GAWTC	3 cut(s)	11, 153, 266
Tru1I	TTAA	3 cut(s)	30, 459, 775
Tru9I	TTAA	3 cut(s)	30, 459, 775
TseFI	GTSAC	2 cut(s)	503, 698
TseI	GCWGC	2 cut(s)	444, 488
Tsp45I	GTSAC	2 cut(s)	503, 698
TspDTI	ATGAA	1 cut(s)	499
TspGWI	ACGGA	1 cut(s)	23
XapI	RAATTY	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	446
XhoI	CTCGAG	1 cut(s)	270
ZrmI	AGTACT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.