Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005578

Physical Location & Seq

Genomic Coordinates Forward (+)

64805846 .. 64809438

Gene Structure 3593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41151

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTTACGAGGATGCCATTGCCGGACTTTCGAAGCTTCTCAGTGACAAAGCTGACCTCGAAGGCGTCGCCGCCGCCAGGATCAACCAGATAACCGCCGAGTTGGAGAGGGCCGGGTCGGATGGGTTTGACCCGGTCGAGAAGCTCAAAAGCGGGTTCGTCCACTTCAAGACGGAGAAGTTTGAGAAAGATGTAGACTTGTACGGCCAGCTCGCCAAAGGCCAAAGCCCCAAGTTTATGGTATTTGCATGCTCGGATTCTCGAGTTTGCCCCTCCCACATCCTCAATTTCCAACCAGGGGAGGCTTTCATGGTCCGAAACATTGCCAATATGGTCCCTCCGTTCGACACGACAAAATACTCGGGAGTGGGGGCGGCCATTGAATACGCAGTGTTGCATCTCAAGGTGGAGAATATTGTGGTGATCGGGCACAGCTCCTGCGGCGGTATAAAGGGGCTCATGTCGATCCCGGACGATGGGACCACCGCGAGTGACTTCATTGAGAATTGGGTCAAAATCTGTGCGCCAGCAAAGACCAAGGTTAAATCAGCATGCGGTGACTTAACTTTTGCAGAGCAGTGCACCAGCTTGGAGAAGGAGGCTGTGAATGTGTCACTTGCGAACTTACTGACATACCCGTTTGTTAGAGAGGCCGTGGTCAACAATAAGCTGGCTCTGAAGGGTGGATACTATGATTTTGTCAACGGTGGTTTCCAGCTCTGGGATCTTGATTTCAATATTACACCCAATGTGATTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010033 GO:0010037 GO:0010119 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071944 GO:0072347 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

253

Amino Acids

27.45

Weight (kDa)

5.17

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	80 - 236	9.4e-45	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23730 AT1G23730 AT1G70410 AT1G70410 AT1G70410
fragaria_vesca	FvH4_4g30530 FvH4_4g34390 FvH4_4g34390
malus_domestica	MD13G1092500.v1.1 MD16G1093300.v1.1
prunus_persica	Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1
pyrus_communis	pycom13g08030 pycom16g07930
rosa_chinensis	RchiOBHm_Chr4g0443811
rosa_laevigata	RLG00000005886
rosa_multiflora	Rmu_sc0005632.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384380
rosa_rugosa	Rorug04G0347600 Rorug04G0347600 Rorug04G0347600 Rorug04G0347600
rosa_samantha	Rh4AG407700 Rh4BG418700 Rh4CG432800
rosa_wichuraiana	Rw4G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	1 cut(s)	488
AciI	CCGC	9 cut(s)	72, 75, 96, 153, 374, 441, 444, 486, 555
AclWI	GGATC	3 cut(s)	89, 460, 732
AcoI	YGGCCR	2 cut(s)	205, 375
AcuI	CTGAAG	1 cut(s)	698
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	4 cut(s)	78, 298, 476, 721
AgsI	TTSAA	3 cut(s)	169, 383, 736
AjnI	CCWGG	2 cut(s)	77, 295
AluBI	AGCT	8 cut(s)	37, 53, 145, 211, 435, 588, 670, 718
AluI	AGCT	8 cut(s)	37, 53, 145, 211, 435, 588, 670, 718
Alw21I	GWGCWC	1 cut(s)	584
Alw44I	GTGCAC	1 cut(s)	580
AlwI	GGATC	3 cut(s)	89, 460, 732
AlwNI	CAGNNNCTG	1 cut(s)	438
Ama87I	CYCGRG	2 cut(s)	261, 361
AoxI	GGCC	5 cut(s)	111, 205, 220, 375, 651
ApaLI	GTGCAC	1 cut(s)	580
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
AspLEI	GCGC	1 cut(s)	526
AspS9I	GGNCC	4 cut(s)	111, 313, 334, 480
AsuC2I	CCSGG	3 cut(s)	115, 134, 470
AsuHPI	GGTGA	2 cut(s)	433, 569
AsuII	TTCGAA	1 cut(s)	32
AvaI	CYCGRG	2 cut(s)	261, 361
AvaII	GGWCC	3 cut(s)	313, 334, 480
BaeGI	GKGCMC	2 cut(s)	432, 584
BanII	GRGCYC	1 cut(s)	459
BarI	GAAGNNNNNNTAC	2 cut(s)	671, 703
Bbv12I	GWGCWC	1 cut(s)	584
BccI	CCATC	2 cut(s)	116, 470
BceAI	ACGGC	2 cut(s)	220, 638
BciT130I	CCWGG	2 cut(s)	79, 297
BciVI	GTATCC	1 cut(s)	680
BcnI	CCSGG	3 cut(s)	115, 134, 470
BfuI	GTATCC	1 cut(s)	680
BisI	GCNGC	4 cut(s)	72, 75, 375, 442
BlsI	GCNGC	4 cut(s)	73, 76, 376, 443
Bme1390I	CCNGG	5 cut(s)	79, 115, 134, 297, 470
Bme18I	GGWCC	3 cut(s)	313, 334, 480
BmeT110I	CYCGRG	2 cut(s)	261, 361
BmgT120I	GGNCC	4 cut(s)	111, 313, 334, 480
BmiI	GGNNCC	2 cut(s)	336, 481
BmrFI	CCNGG	5 cut(s)	79, 115, 134, 297, 470
BmsI	GCATC	2 cut(s)	4, 406
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	386
BpuMI	CCSGG	3 cut(s)	115, 134, 470
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	3 cut(s)	296, 537, 654
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 298, 476, 721
Bse3DI	GCAATG	2 cut(s)	18, 321
BseBI	CCWGG	2 cut(s)	79, 297
BseDI	CCNNGG	3 cut(s)	296, 537, 654
BseGI	GGATG	3 cut(s)	19, 127, 279
BseLI	CCNNNNNNNGG	4 cut(s)	78, 298, 476, 721
BseMI	GCAATG	2 cut(s)	18, 321
BseMII	CTCAG	1 cut(s)	55
BseSI	GKGCMC	2 cut(s)	432, 584
Bsh1236I	CGCG	1 cut(s)	488
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	5 cut(s)	113, 207, 222, 377, 653
BsiEI	CGRYCG	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	584
BsiHKCI	CYCGRG	2 cut(s)	261, 361
BsiSI	CCGG	4 cut(s)	24, 114, 134, 470
BslFI	GGGAC	2 cut(s)	320, 493
BslI	CCNNNNNNNGG	4 cut(s)	78, 298, 476, 721
BsmFI	GGGAC	2 cut(s)	320, 493
BsnI	GGCC	5 cut(s)	113, 207, 222, 377, 653
BsoBI	CYCGRG	2 cut(s)	261, 361
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	3 cut(s)	432, 459, 584
Bsp143I	GATC	4 cut(s)	81, 423, 465, 724
BspACI	CCGC	9 cut(s)	72, 75, 96, 153, 374, 441, 444, 486, 555
BspANI	GGCC	5 cut(s)	113, 207, 222, 377, 653
BspCNI	CTCAG	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	488
BspLI	GGNNCC	2 cut(s)	336, 481
BspPI	GGATC	3 cut(s)	89, 460, 732
BspT104I	TTCGAA	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	18, 321
BssECI	CCNNGG	3 cut(s)	296, 537, 654
BssMI	GATC	4 cut(s)	81, 423, 465, 724
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	537
Bst2UI	CCWGG	2 cut(s)	79, 297
Bst4CI	ACNGT	1 cut(s)	707
BstACI	GRCGYC	1 cut(s)	66
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	6 cut(s)	209, 213, 250, 528, 553, 672
BstDEI	CTNAG	1 cut(s)	41
BstDSI	CCRYGG	1 cut(s)	654
BstF5I	GGATG	3 cut(s)	19, 127, 279
BstFNI	CGCG	1 cut(s)	488
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	4 cut(s)	84, 426, 468, 727
BstMBI	GATC	4 cut(s)	81, 423, 465, 724
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	441
BstNI	CCWGG	2 cut(s)	79, 297
BstNSI	RCATGY	2 cut(s)	252, 555
BstSCI	CCNGG	5 cut(s)	77, 113, 132, 295, 468
BstSLI	GKGCMC	2 cut(s)	432, 584
BstUI	CGCG	1 cut(s)	488
BstX2I	RGATCY	1 cut(s)	724
BstXI	CCANNNNNNTGG	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	724
BsuI	GTATCC	1 cut(s)	680
BsuRI	GGCC	5 cut(s)	113, 207, 222, 377, 653
BtgI	CCRYGG	1 cut(s)	654
BtsCI	GGATG	3 cut(s)	19, 127, 279
BtsI	GCAGTG	2 cut(s)	396, 584
BtsIMutI	CAGTG	3 cut(s)	49, 396, 584
Cac8I	GCNNGC	6 cut(s)	209, 213, 250, 528, 553, 672
CaiI	CAGNNNCTG	1 cut(s)	438
CfoI	GCGC	1 cut(s)	526
Cfr13I	GGNCC	4 cut(s)	111, 313, 334, 480
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	4 cut(s)	249, 310, 460, 552
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	4 cut(s)	83, 425, 467, 726
DpnII	GATC	4 cut(s)	81, 423, 465, 724
EaeI	YGGCCR	2 cut(s)	205, 375
Eco130I	CCWWGG	1 cut(s)	537
Eco24I	GRGCYC	1 cut(s)	459
Eco47I	GGWCC	3 cut(s)	313, 334, 480
Eco57I	CTGAAG	1 cut(s)	698
Eco88I	CYCGRG	2 cut(s)	261, 361
EcoRII	CCWGG	2 cut(s)	77, 295
EcoT14I	CCWWGG	1 cut(s)	537
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	537
FaeI	CATG	4 cut(s)	252, 313, 463, 555
FaqI	GGGAC	2 cut(s)	320, 493
FatI	CATG	4 cut(s)	248, 309, 459, 551
FauI	CCCGC	1 cut(s)	146
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	4 cut(s)	72, 75, 375, 442
FokI	GGATG	3 cut(s)	26, 134, 266
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	4 cut(s)	72, 75, 375, 442
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	4 cut(s)	72, 75, 375, 442
HaeIII	GGCC	5 cut(s)	113, 207, 222, 377, 653
HapII	CCGG	4 cut(s)	24, 114, 134, 470
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	1 cut(s)	526
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	4 cut(s)	252, 313, 463, 555
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HincII	GTYRAC	2 cut(s)	661, 703
HindII	GTYRAC	2 cut(s)	661, 703
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	4 cut(s)	24, 114, 134, 470
HphI	GGTGA	2 cut(s)	433, 569
Hpy166II	GTNNAC	5 cut(s)	163, 196, 582, 661, 703
Hpy188I	TCNGA	4 cut(s)	121, 256, 317, 678
Hpy188III	TCNNGA	5 cut(s)	139, 169, 261, 363, 728
Hpy8I	GTNNAC	5 cut(s)	163, 196, 582, 661, 703
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	56, 589, 673
HpyCH4III	ACNGT	1 cut(s)	707
HpyCH4V	TGCA	4 cut(s)	248, 397, 572, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	441
HpyF3I	CTNAG	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	4 cut(s)	252, 313, 463, 555
HspAI	GCGC	1 cut(s)	524
Kzo9I	GATC	4 cut(s)	81, 423, 465, 724
LmnI	GCTCC	1 cut(s)	440
LweI	GCATC	2 cut(s)	4, 406
MaeIII	GTNAC	4 cut(s)	44, 491, 557, 612
MalI	GATC	4 cut(s)	83, 425, 467, 726
MboI	GATC	4 cut(s)	81, 423, 465, 724
MflI	RGATCY	1 cut(s)	724
MhlI	GDGCHC	3 cut(s)	432, 459, 584
MluCI	AATT	2 cut(s)	286, 505
MmeI	TCCRAC	3 cut(s)	84, 99, 316
MnlI	CCTC	9 cut(s)	4, 68, 102, 283, 293, 295, 348, 592, 643
MseI	TTAA	2 cut(s)	543, 563
MspI	CCGG	4 cut(s)	24, 114, 134, 470
MspR9I	CCNGG	5 cut(s)	79, 115, 134, 297, 470
MvaI	CCWGG	2 cut(s)	79, 297
MvnI	CGCG	1 cut(s)	488
MwoI	GCNNNNNNNGC	1 cut(s)	441
NciI	CCSGG	3 cut(s)	115, 134, 470
NdeII	GATC	4 cut(s)	81, 423, 465, 724
NlaIII	CATG	4 cut(s)	252, 313, 463, 555
NlaIV	GGNNCC	2 cut(s)	336, 481
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	4 cut(s)	44, 491, 557, 612
NspI	RCATGY	2 cut(s)	252, 555
NspV	TTCGAA	1 cut(s)	32
PaeI	GCATGC	2 cut(s)	252, 555
PaeR7I	CTCGAG	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	257
PflFI	GACNNNGTC	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	4 cut(s)	73, 76, 376, 443
Psp6I	CCWGG	2 cut(s)	77, 295
PspGI	CCWGG	2 cut(s)	77, 295
PspN4I	GGNNCC	2 cut(s)	336, 481
PspPI	GGNCC	4 cut(s)	111, 313, 334, 480
PstNI	CAGNNNCTG	1 cut(s)	438
PsuI	RGATCY	1 cut(s)	724
PsyI	GACNNNGTC	1 cut(s)	134
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	2 cut(s)	543, 563
SatI	GCNGC	4 cut(s)	72, 75, 375, 442
Sau3AI	GATC	4 cut(s)	81, 423, 465, 724
Sau96I	GGNCC	4 cut(s)	111, 313, 334, 480
ScrFI	CCNGG	5 cut(s)	79, 115, 134, 297, 470
SduI	GDGCHC	3 cut(s)	432, 459, 584
SfaNI	GCATC	2 cut(s)	4, 406
Sfr274I	CTCGAG	1 cut(s)	261
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	3 cut(s)	313, 334, 480
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	2 cut(s)	261, 401
SmoI	CTYRAG	2 cut(s)	261, 401
SphI	GCATGC	2 cut(s)	252, 555
Sse9I	AATT	2 cut(s)	286, 505
SsiI	CCGC	9 cut(s)	72, 75, 96, 153, 374, 441, 444, 486, 555
SspI	AATATT	2 cut(s)	415, 739
StyD4I	CCNGG	5 cut(s)	77, 113, 132, 295, 468
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	1 cut(s)	707
TaqI	TCGA	6 cut(s)	32, 60, 138, 262, 345, 464
TasI	AATT	2 cut(s)	286, 505
TauI	GCSGC	4 cut(s)	74, 77, 377, 444
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	2 cut(s)	543, 563
Tru9I	TTAA	2 cut(s)	543, 563
TscAI	CASTG	3 cut(s)	49, 396, 584
TseFI	GTSAC	4 cut(s)	44, 491, 557, 612
Tsp45I	GTSAC	4 cut(s)	44, 491, 557, 612
TspDTI	ATGAA	2 cut(s)	298, 487
TspGWI	ACGGA	2 cut(s)	188, 330
TspRI	CASTG	3 cut(s)	49, 396, 584
Tth111I	GACNNNGTC	1 cut(s)	134
VneI	GTGCAC	1 cut(s)	580
VpaK11BI	GGWCC	3 cut(s)	313, 334, 480
XceI	RCATGY	2 cut(s)	252, 555
XhoI	CTCGAG	1 cut(s)	261
XmiI	GTMKAC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.