Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005578

Physical Location & Seq

Genomic Coordinates Reverse (-)

30102309 .. 30103106

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCGTACGAGGAAGCCATTGCCCAACTTTCGAAGCTCTTGAGTGAGAAACCCGACCTCAAAGGCATGGCCGGCGCAAAGATCAAGCAGATAACCGCCGAGTTGGAGAAGGCCGCCGGTTCGAAGCAGTTGGACCCGGTGGAGAGAATCCAAACCGGGTTCGTTCACTTCAAGACGGAGAAGTTTGAGAGACATGTCGACTTATACGGCAAGCTTGCCACCGGCCAAACCCCCAAGTTTATGGTTTTTGCATGCTCAGATTCTCGAGTGTGCCCTTCCCACATCCTTAACTTTCAGCCTGGGGAGGCCTTCGTGGTCCGAAACGTCGCCAACATGGTCCCTTCATGCAACAAAACACACTACTCCTCAGTTGGGGCGGCAGTTGAATACGCCGTGCTACGTTTGAGAGTGGAGAACATTGTGGTTATGGGACACAGCCGCTGCGGCGGTATAAAAGGGCTCATGTCGATCCCGGACGACGGGGGCCGTGACGGTGACGACGAGTTTGTTGAGAGTTGGGTCAAAATATGTGCACCTGCAAAGGCCAAGGTTAAGTCAGCTCATAGTGATCTAAGTTTTGCAGAGCAGTGCAAAGTCTTGGAGAAGGAGGCTGTGAATGTGTCACTTGGGAACTTATTGACGTACCCATTTGTTAGAGAGGCCGTTGCGAACAATACTCTTTCTCTTCAGGGTGGATACTACGACTTCGTTAACGGTAGTTTCCAGTTCTGGCATTTTGATTTCAACACTGCACCCAAATTGTATGCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010033 GO:0010037 GO:0010119 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071944 GO:0072347 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

258

Amino Acids

28.28

Weight (kDa)

7.04

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	81 - 240	6.8e-44	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23730 AT1G23730 AT1G70410 AT1G70410 AT1G70410
fragaria_vesca	FvH4_4g30530 FvH4_4g34390 FvH4_4g34390
malus_domestica	MD13G1092500.v1.1 MD16G1093300.v1.1
prunus_persica	Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1
pyrus_communis	pycom13g08030 pycom16g07930
rosa_chinensis	RchiOBHm_Chr4g0443811
rosa_laevigata	RLG00000005886
rosa_multiflora	Rmu_sc0005632.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384380
rosa_rugosa	Rorug04G0347600 Rorug04G0347600 Rorug04G0347600 Rorug04G0347600
rosa_samantha	Rh4AG407700 Rh4BG418700 Rh4CG432800
rosa_wichuraiana	Rw4G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	544
Acc36I	ACCTGC	1 cut(s)	544
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	6 cut(s)	96, 114, 377, 439, 444, 447
AclWI	GGATC	1 cut(s)	463
AcoI	YGGCCR	2 cut(s)	69, 223
AcuI	CTGAAG	1 cut(s)	671
AfaI	GTAC	2 cut(s)	8, 644
AfiI	CCNNNNNNNGG	2 cut(s)	372, 479
AflIII	ACRYGT	1 cut(s)	193
AgsI	TTSAA	3 cut(s)	172, 386, 745
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	3 cut(s)	37, 214, 560
AluI	AGCT	3 cut(s)	37, 214, 560
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	1 cut(s)	184
Alw44I	GTGCAC	1 cut(s)	531
AlwI	GGATC	1 cut(s)	463
AlwNI	CAGNNNCTG	1 cut(s)	441
Ama87I	CYCGRG	1 cut(s)	264
AoxI	GGCC	7 cut(s)	69, 111, 223, 306, 484, 543, 660
ApaLI	GTGCAC	1 cut(s)	531
ApeKI	GCWGC	1 cut(s)	441
ArsI	GACNNNNNNTTYG	2 cut(s)	488, 520
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	4 cut(s)	133, 316, 337, 484
AsuC2I	CCSGG	3 cut(s)	137, 157, 473
AsuHPI	GGTGA	1 cut(s)	506
AsuII	TTCGAA	2 cut(s)	32, 122
AvaI	CYCGRG	1 cut(s)	264
AvaII	GGWCC	3 cut(s)	133, 316, 337
BaeGI	GKGCMC	2 cut(s)	275, 535
BanII	GRGCYC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	535
BbvI	GCAGC	1 cut(s)	428
BceAI	ACGGC	4 cut(s)	223, 377, 471, 647
BciT130I	CCWGG	1 cut(s)	300
BciVI	GTATCC	1 cut(s)	689
BcnI	CCSGG	3 cut(s)	137, 157, 473
BcoDI	GTCTC	1 cut(s)	184
BfuAI	ACCTGC	1 cut(s)	544
BfuI	GTATCC	1 cut(s)	689
BglI	GCCNNNNNGGC	1 cut(s)	444
BisI	GCNGC	5 cut(s)	114, 378, 439, 442, 445
BlsI	GCNGC	5 cut(s)	115, 379, 440, 443, 446
Bme1390I	CCNGG	4 cut(s)	137, 157, 300, 473
Bme18I	GGWCC	3 cut(s)	133, 316, 337
BmeT110I	CYCGRG	1 cut(s)	264
BmgT120I	GGNCC	4 cut(s)	133, 316, 337, 484
BmiI	GGNNCC	3 cut(s)	135, 339, 485
BmrFI	CCNGG	4 cut(s)	137, 157, 300, 473
Bpu14I	TTCGAA	2 cut(s)	32, 122
BpuEI	CTTGAG	1 cut(s)	61
BpuMI	CCSGG	3 cut(s)	137, 157, 473
BsaJI	CCNNGG	2 cut(s)	299, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 479
Bse118I	RCCGGY	3 cut(s)	71, 116, 221
Bse1I	ACTGG	1 cut(s)	724
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	299, 546
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	2 cut(s)	372, 479
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	270, 381
BseNI	ACTGG	1 cut(s)	724
BseRI	GAGGAG	1 cut(s)	355
BseSI	GKGCMC	2 cut(s)	275, 535
BseXI	GCAGC	1 cut(s)	428
BsgI	GTGCAG	1 cut(s)	735
BshFI	GGCC	7 cut(s)	71, 113, 225, 308, 486, 545, 662
BsiHKAI	GWGCWC	1 cut(s)	535
BsiHKCI	CYCGRG	1 cut(s)	264
BsiSI	CCGG	6 cut(s)	72, 117, 137, 156, 222, 473
BsiWI	CGTACG	1 cut(s)	6
BslFI	GGGAC	2 cut(s)	323, 444
BslI	CCNNNNNNNGG	2 cut(s)	372, 479
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	2 cut(s)	323, 444
BsnI	GGCC	7 cut(s)	71, 113, 225, 308, 486, 545, 662
BsoBI	CYCGRG	1 cut(s)	264
Bsp119I	TTCGAA	2 cut(s)	32, 122
Bsp1286I	GDGCHC	3 cut(s)	275, 462, 535
Bsp143I	GATC	3 cut(s)	81, 468, 568
BspACI	CCGC	6 cut(s)	96, 114, 377, 439, 444, 447
BspANI	GGCC	7 cut(s)	71, 113, 225, 308, 486, 545, 662
BspCNI	CTCAG	2 cut(s)	269, 380
BspLI	GGNNCC	3 cut(s)	135, 339, 485
BspMI	ACCTGC	1 cut(s)	544
BspPI	GGATC	1 cut(s)	463
BspT104I	TTCGAA	2 cut(s)	32, 122
BsrDI	GCAATG	1 cut(s)	18
BsrFI	RCCGGY	3 cut(s)	71, 116, 221
BsrI	ACTGG	1 cut(s)	724
BssAI	RCCGGY	3 cut(s)	71, 116, 221
BssECI	CCNNGG	2 cut(s)	299, 546
BssMI	GATC	3 cut(s)	81, 468, 568
BssT1I	CCWWGG	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	494, 716
Bst6I	CTCTTC	1 cut(s)	690
BstBI	TTCGAA	2 cut(s)	32, 122
BstC8I	GCNNGC	4 cut(s)	73, 212, 216, 253
BstDEI	CTNAG	3 cut(s)	256, 367, 572
BstF5I	GGATG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	3 cut(s)	84, 471, 571
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	3 cut(s)	81, 468, 568
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 444
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	2 cut(s)	197, 255
BstSCI	CCNGG	4 cut(s)	135, 155, 298, 471
BstSLI	GKGCMC	2 cut(s)	275, 535
BstV1I	GCAGC	1 cut(s)	428
BstXI	CCANNNNNNTGG	1 cut(s)	241
BsuI	GTATCC	1 cut(s)	689
BsuRI	GGCC	7 cut(s)	71, 113, 225, 308, 486, 545, 662
BtsCI	GGATG	1 cut(s)	282
BtsI	GCAGTG	2 cut(s)	593, 747
BtsIMutI	CAGTG	2 cut(s)	593, 747
BveI	ACCTGC	1 cut(s)	544
Cac8I	GCNNGC	4 cut(s)	73, 212, 216, 253
CaiI	CAGNNNCTG	1 cut(s)	441
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	3 cut(s)	71, 116, 221
Cfr13I	GGNCC	4 cut(s)	133, 316, 337, 484
Csp6I	GTAC	2 cut(s)	7, 643
CviAII	CATG	6 cut(s)	67, 194, 252, 334, 345, 463
CviQI	GTAC	2 cut(s)	7, 643
DdeI	CTNAG	3 cut(s)	256, 367, 572
DpnI	GATC	3 cut(s)	83, 470, 570
DpnII	GATC	3 cut(s)	81, 468, 568
EaeI	YGGCCR	2 cut(s)	69, 223
Eam1104I	CTCTTC	1 cut(s)	690
EarI	CTCTTC	1 cut(s)	690
Eco130I	CCWWGG	1 cut(s)	546
Eco147I	AGGCCT	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	462
Eco47I	GGWCC	3 cut(s)	133, 316, 337
Eco57I	CTGAAG	1 cut(s)	671
Eco88I	CYCGRG	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	546
EcoT22I	ATGCAT	1 cut(s)	769
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	6 cut(s)	70, 197, 255, 337, 348, 466
FaqI	GGGAC	2 cut(s)	323, 444
FatI	CATG	6 cut(s)	66, 193, 251, 333, 344, 462
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	5 cut(s)	114, 378, 439, 442, 445
FokI	GGATG	1 cut(s)	269
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	5 cut(s)	114, 378, 439, 442, 445
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	5 cut(s)	114, 378, 439, 442, 445
HaeIII	GGCC	7 cut(s)	71, 113, 225, 308, 486, 545, 662
HapII	CCGG	6 cut(s)	72, 117, 137, 156, 222, 473
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	6 cut(s)	70, 197, 255, 337, 348, 466
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	2 cut(s)	199, 712
HindII	GTYRAC	2 cut(s)	199, 712
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	2 cut(s)	147, 260
HpaI	GTTAAC	1 cut(s)	712
HpaII	CCGG	6 cut(s)	72, 117, 137, 156, 222, 473
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	4 cut(s)	166, 199, 533, 712
Hpy188I	TCNGA	2 cut(s)	259, 320
Hpy188III	TCNNGA	3 cut(s)	40, 172, 264
Hpy8I	GTNNAC	4 cut(s)	166, 199, 533, 712
Hpy99I	CGWCG	3 cut(s)	329, 482, 503
HpyAV	CCTTC	5 cut(s)	103, 285, 319, 351, 598
HpyCH4III	ACNGT	2 cut(s)	494, 716
HpyCH4IV	ACGT	3 cut(s)	324, 400, 641
HpyCH4V	TGCA	8 cut(s)	251, 348, 533, 539, 581, 591, 752, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 444
HpyF3I	CTNAG	3 cut(s)	256, 367, 572
HpySE526I	ACGT	3 cut(s)	324, 400, 641
Hsp92II	CATG	6 cut(s)	70, 197, 255, 337, 348, 466
HspAI	GCGC	1 cut(s)	75
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	712
Kzo9I	GATC	3 cut(s)	81, 468, 568
Lsp1109I	GCAGC	1 cut(s)	428
MaeII	ACGT	3 cut(s)	324, 400, 641
MaeIII	GTNAC	3 cut(s)	488, 494, 621
MalI	GATC	3 cut(s)	83, 470, 570
MboI	GATC	3 cut(s)	81, 468, 568
MboII	GAAGA	1 cut(s)	677
MhlI	GDGCHC	3 cut(s)	275, 462, 535
MluCI	AATT	1 cut(s)	758
MmeI	TCCRAC	2 cut(s)	84, 111
MnlI	CCTC	6 cut(s)	4, 68, 298, 376, 601, 652
Mph1103I	ATGCAT	1 cut(s)	769
MroNI	GCCGGC	1 cut(s)	71
MseI	TTAA	3 cut(s)	288, 552, 711
MspA1I	CMGCKG	1 cut(s)	441
MspI	CCGG	6 cut(s)	72, 117, 137, 156, 222, 473
MspR9I	CCNGG	4 cut(s)	137, 157, 300, 473
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	72, 444
NaeI	GCCGGC	1 cut(s)	73
NciI	CCSGG	3 cut(s)	137, 157, 473
NdeII	GATC	3 cut(s)	81, 468, 568
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	6 cut(s)	70, 197, 255, 337, 348, 466
NlaIV	GGNNCC	3 cut(s)	135, 339, 485
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	3 cut(s)	488, 494, 621
NsiI	ATGCAT	1 cut(s)	769
NspI	RCATGY	2 cut(s)	197, 255
NspV	TTCGAA	2 cut(s)	32, 122
PaeI	GCATGC	1 cut(s)	255
PaeR7I	CTCGAG	1 cut(s)	264
PaqCI	CACCTGC	1 cut(s)	544
PceI	AGGCCT	1 cut(s)	308
PciI	ACATGT	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	147, 260
Pfl23II	CGTACG	1 cut(s)	6
PfoI	TCCNGGA	1 cut(s)	471
PkrI	GCNGC	5 cut(s)	115, 379, 440, 443, 446
PscI	ACATGT	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspLI	CGTACG	1 cut(s)	6
PspN4I	GGNNCC	3 cut(s)	135, 339, 485
PspPI	GGNCC	4 cut(s)	133, 316, 337, 484
PstNI	CAGNNNCTG	1 cut(s)	441
RsaI	GTAC	2 cut(s)	8, 644
RsaNI	GTAC	2 cut(s)	7, 643
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	288, 552, 711
SatI	GCNGC	5 cut(s)	114, 378, 439, 442, 445
Sau3AI	GATC	3 cut(s)	81, 468, 568
Sau96I	GGNCC	4 cut(s)	133, 316, 337, 484
ScrFI	CCNGG	4 cut(s)	137, 157, 300, 473
SduI	GDGCHC	3 cut(s)	275, 462, 535
SetI	ASST	9 cut(s)	39, 60, 216, 327, 403, 538, 552, 562, 644
Sfr274I	CTCGAG	1 cut(s)	264
SfuI	TTCGAA	2 cut(s)	32, 122
SinI	GGWCC	3 cut(s)	133, 316, 337
SlaI	CTCGAG	1 cut(s)	264
SmlI	CTYRAG	2 cut(s)	40, 264
SmoI	CTYRAG	2 cut(s)	40, 264
SphI	GCATGC	1 cut(s)	255
Sse9I	AATT	1 cut(s)	758
SseBI	AGGCCT	1 cut(s)	308
SsiI	CCGC	6 cut(s)	96, 114, 377, 439, 444, 447
StuI	AGGCCT	1 cut(s)	308
StyD4I	CCNGG	4 cut(s)	135, 155, 298, 471
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	2 cut(s)	494, 716
TaiI	ACGT	3 cut(s)	327, 403, 644
TaqI	TCGA	5 cut(s)	32, 122, 198, 265, 467
TasI	AATT	1 cut(s)	758
TauI	GCSGC	4 cut(s)	116, 380, 441, 447
TfiI	GAWTC	2 cut(s)	147, 260
Tru1I	TTAA	3 cut(s)	288, 552, 711
Tru9I	TTAA	3 cut(s)	288, 552, 711
TscAI	CASTG	2 cut(s)	593, 754
TseFI	GTSAC	3 cut(s)	488, 494, 621
TseI	GCWGC	1 cut(s)	441
Tsp45I	GTSAC	3 cut(s)	488, 494, 621
TspDTI	ATGAA	1 cut(s)	333
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	2 cut(s)	593, 754
VneI	GTGCAC	1 cut(s)	531
VpaK11BI	GGWCC	3 cut(s)	133, 316, 337
XceI	RCATGY	2 cut(s)	197, 255
XhoI	CTCGAG	1 cut(s)	264
XmiI	GTMKAC	1 cut(s)	198
Zsp2I	ATGCAT	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.