Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005578

Physical Location & Seq

Genomic Coordinates Forward (+)

56529745 .. 56540034

Gene Structure 10290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG418700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCCGGAACGTTTAGAAAATGCATGATGCTCTGTTGCACAGCAAAGGTCACGAAGGAAGAAGACATGGCTTACGAGGATGCCATTGCCGGACTTTCGAAGCTTCTCAGTGACAAAGCTGACCTCGAAGGCGTCGCCGCCGCCAGGATCAACCAGATAACCGCCGAGTTGGAGAGGGCCGGGTCGGATGGGTTTGACCCTGTCGAGAAGCTCAAAAGCGGGTTCGTCCACTTCAAGACGGAGAAGTTTGAGAAGGATGTGGACTTGTACGGCCAGCTCGCCAAAGGCCAAAGCCCCAAGTTTATGGTATTTGCATGCTCGGATTCTCGAGTTTGCCCCTCCCACATCCTCAATTTCCAACCAGGGGAGGCTTTCATGGTCCGAAACATTGCCAATATGGTCCCTCCGTTCGACACGACAAAATACTCGGGAGTGGGGGCGGCCATTGAATACGCAGTGTTGCATCTCAAGGTGGAGAATATTGTGGTGATCGGGCACAGCTCCTGCGGCGGTATAAAGGGGCTCATGTCGATCCCGGACGATGGGACCACCGCGAGTGACTTCATTGAGAATTGGGTCAAAATCTGTGCGCCAGCAAAGACCAAGGTTAAATCAGCATGCGGTGACTTAACTTTTGCAGAGCAGTGCACCAGCTTGGAGAAGGAGGCTGTGAATGTGTCACTTGCGAACTTACTGACTTACCCGTTTGTTAGAGAGGCCGTGGTCAACAATAAGCTGGCTCTGAAGGGTGGATACTATGATTTTGTCAACGGTGGTTTCCAGCTCTGGGATCTTGATTTCAATATTACATCCAATGTGATTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010033 GO:0010037 GO:0010119 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071944 GO:0072347 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

275

Amino Acids

29.91

Weight (kDa)

5.34

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	102 - 258	1.2e-44	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23730 AT1G23730 AT1G70410 AT1G70410 AT1G70410
fragaria_vesca	FvH4_4g30530 FvH4_4g34390 FvH4_4g34390
malus_domestica	MD13G1092500.v1.1 MD16G1093300.v1.1
prunus_persica	Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1
pyrus_communis	pycom13g08030 pycom16g07930
rosa_chinensis	RchiOBHm_Chr4g0443811
rosa_laevigata	RLG00000005886
rosa_multiflora	Rmu_sc0005632.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384380
rosa_rugosa	Rorug04G0347600 Rorug04G0347600 Rorug04G0347600 Rorug04G0347600
rosa_samantha	Rh4AG407700 Rh4BG418700 Rh4CG432800
rosa_wichuraiana	Rw4G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	554
AciI	CCGC	9 cut(s)	138, 141, 162, 219, 440, 507, 510, 552, 621
AclI	AACGTT	1 cut(s)	11
AclWI	GGATC	3 cut(s)	155, 526, 798
AcoI	YGGCCR	3 cut(s)	3, 271, 441
AcuI	CTGAAG	1 cut(s)	764
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	4 cut(s)	144, 364, 542, 787
AgsI	TTSAA	3 cut(s)	235, 449, 802
AjnI	CCWGG	2 cut(s)	143, 361
AluBI	AGCT	8 cut(s)	103, 119, 211, 277, 501, 654, 736, 784
AluI	AGCT	8 cut(s)	103, 119, 211, 277, 501, 654, 736, 784
Alw21I	GWGCWC	1 cut(s)	650
Alw44I	GTGCAC	1 cut(s)	646
AlwI	GGATC	3 cut(s)	155, 526, 798
AlwNI	CAGNNNCTG	1 cut(s)	504
Ama87I	CYCGRG	2 cut(s)	327, 427
AoxI	GGCC	6 cut(s)	3, 177, 271, 286, 441, 717
ApaLI	GTGCAC	1 cut(s)	646
ArsI	GACNNNNNNTTYG	2 cut(s)	617, 649
AspLEI	GCGC	1 cut(s)	592
AspS9I	GGNCC	4 cut(s)	177, 379, 400, 546
AsuC2I	CCSGG	2 cut(s)	181, 536
AsuHPI	GGTGA	2 cut(s)	499, 635
AsuII	TTCGAA	1 cut(s)	98
AvaI	CYCGRG	2 cut(s)	327, 427
AvaII	GGWCC	3 cut(s)	379, 400, 546
BaeGI	GKGCMC	2 cut(s)	498, 650
BanII	GRGCYC	1 cut(s)	525
BarI	GAAGNNNNNNTAC	2 cut(s)	737, 769
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	650
BccI	CCATC	2 cut(s)	182, 536
BceAI	ACGGC	2 cut(s)	286, 704
BciT130I	CCWGG	2 cut(s)	145, 363
BciVI	GTATCC	1 cut(s)	746
BcnI	CCSGG	2 cut(s)	181, 536
BfuI	GTATCC	1 cut(s)	746
BisI	GCNGC	4 cut(s)	138, 141, 441, 508
BlsI	GCNGC	4 cut(s)	139, 142, 442, 509
Bme1390I	CCNGG	4 cut(s)	145, 181, 363, 536
Bme18I	GGWCC	3 cut(s)	379, 400, 546
BmeT110I	CYCGRG	2 cut(s)	327, 427
BmgT120I	GGNCC	4 cut(s)	177, 379, 400, 546
BmiI	GGNNCC	2 cut(s)	402, 547
BmrFI	CCNGG	4 cut(s)	145, 181, 363, 536
BmsI	GCATC	3 cut(s)	18, 70, 472
BpiI	GAAGAC	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	452
BpuMI	CCSGG	2 cut(s)	181, 536
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	3 cut(s)	362, 603, 720
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 364, 542, 787
Bse3DI	GCAATG	2 cut(s)	84, 387
BseBI	CCWGG	2 cut(s)	145, 363
BseDI	CCNNGG	3 cut(s)	362, 603, 720
BseGI	GGATG	5 cut(s)	85, 193, 262, 345, 809
BseLI	CCNNNNNNNGG	4 cut(s)	144, 364, 542, 787
BseMI	GCAATG	2 cut(s)	84, 387
BseMII	CTCAG	1 cut(s)	121
BseSI	GKGCMC	2 cut(s)	498, 650
Bsh1236I	CGCG	1 cut(s)	554
BshFI	GGCC	6 cut(s)	5, 179, 273, 288, 443, 719
BsiHKAI	GWGCWC	1 cut(s)	650
BsiHKCI	CYCGRG	2 cut(s)	327, 427
BsiSI	CCGG	4 cut(s)	6, 90, 180, 536
BslFI	GGGAC	2 cut(s)	386, 559
BslI	CCNNNNNNNGG	4 cut(s)	144, 364, 542, 787
BsmFI	GGGAC	2 cut(s)	386, 559
BsnI	GGCC	6 cut(s)	5, 179, 273, 288, 443, 719
BsoBI	CYCGRG	2 cut(s)	327, 427
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	3 cut(s)	498, 525, 650
Bsp143I	GATC	4 cut(s)	147, 489, 531, 790
BspACI	CCGC	9 cut(s)	138, 141, 162, 219, 440, 507, 510, 552, 621
BspANI	GGCC	6 cut(s)	5, 179, 273, 288, 443, 719
BspCNI	CTCAG	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	554
BspLI	GGNNCC	2 cut(s)	402, 547
BspPI	GGATC	3 cut(s)	155, 526, 798
BspT104I	TTCGAA	1 cut(s)	98
BsrDI	GCAATG	2 cut(s)	84, 387
BssECI	CCNNGG	3 cut(s)	362, 603, 720
BssMI	GATC	4 cut(s)	147, 489, 531, 790
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	603
Bst2UI	CCWGG	2 cut(s)	145, 363
Bst4CI	ACNGT	1 cut(s)	773
BstACI	GRCGYC	1 cut(s)	132
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	6 cut(s)	275, 279, 316, 594, 619, 738
BstDEI	CTNAG	1 cut(s)	107
BstDSI	CCRYGG	1 cut(s)	720
BstF5I	GGATG	5 cut(s)	85, 193, 262, 345, 809
BstFNI	CGCG	1 cut(s)	554
BstHHI	GCGC	1 cut(s)	592
BstKTI	GATC	4 cut(s)	150, 492, 534, 793
BstMBI	GATC	4 cut(s)	147, 489, 531, 790
BstMWI	GCNNNNNNNGC	1 cut(s)	507
BstNI	CCWGG	2 cut(s)	145, 363
BstNSI	RCATGY	2 cut(s)	318, 621
BstSCI	CCNGG	4 cut(s)	143, 179, 361, 534
BstSLI	GKGCMC	2 cut(s)	498, 650
BstUI	CGCG	1 cut(s)	554
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	790
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	790
BsuI	GTATCC	1 cut(s)	746
BsuRI	GGCC	6 cut(s)	5, 179, 273, 288, 443, 719
BtgI	CCRYGG	1 cut(s)	720
BtsCI	GGATG	5 cut(s)	85, 193, 262, 345, 809
BtsI	GCAGTG	2 cut(s)	462, 650
BtsIMutI	CAGTG	3 cut(s)	115, 462, 650
Cac8I	GCNNGC	6 cut(s)	275, 279, 316, 594, 619, 738
CaiI	CAGNNNCTG	1 cut(s)	504
CfoI	GCGC	1 cut(s)	592
Cfr13I	GGNCC	4 cut(s)	177, 379, 400, 546
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	6 cut(s)	25, 67, 315, 376, 526, 618
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	4 cut(s)	149, 491, 533, 792
DpnII	GATC	4 cut(s)	147, 489, 531, 790
EaeI	YGGCCR	3 cut(s)	3, 271, 441
Eco130I	CCWWGG	1 cut(s)	603
Eco24I	GRGCYC	1 cut(s)	525
Eco47I	GGWCC	3 cut(s)	379, 400, 546
Eco57I	CTGAAG	1 cut(s)	764
Eco88I	CYCGRG	2 cut(s)	327, 427
EcoRII	CCWGG	2 cut(s)	143, 361
EcoT14I	CCWWGG	1 cut(s)	603
EcoT22I	ATGCAT	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	603
FaeI	CATG	6 cut(s)	28, 70, 318, 379, 529, 621
FaqI	GGGAC	2 cut(s)	386, 559
FatI	CATG	6 cut(s)	24, 66, 314, 375, 525, 617
FauI	CCCGC	1 cut(s)	212
Fnu4HI	GCNGC	4 cut(s)	138, 141, 441, 508
FokI	GGATG	5 cut(s)	92, 200, 269, 332, 796
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	4 cut(s)	138, 141, 441, 508
GlaI	GCGC	1 cut(s)	591
GluI	GCNGC	4 cut(s)	138, 141, 441, 508
HaeIII	GGCC	6 cut(s)	5, 179, 273, 288, 443, 719
HapII	CCGG	4 cut(s)	6, 90, 180, 536
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	1 cut(s)	592
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	6 cut(s)	28, 70, 318, 379, 529, 621
Hin6I	GCGC	1 cut(s)	590
HinP1I	GCGC	1 cut(s)	590
HincII	GTYRAC	2 cut(s)	727, 769
HindII	GTYRAC	2 cut(s)	727, 769
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	4 cut(s)	6, 90, 180, 536
HphI	GGTGA	2 cut(s)	499, 635
Hpy166II	GTNNAC	5 cut(s)	229, 262, 648, 727, 769
Hpy188I	TCNGA	4 cut(s)	187, 322, 383, 744
Hpy188III	TCNNGA	6 cut(s)	52, 205, 235, 327, 429, 794
Hpy8I	GTNNAC	5 cut(s)	229, 262, 648, 727, 769
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	5 cut(s)	49, 122, 247, 655, 739
HpyCH4III	ACNGT	1 cut(s)	773
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	6 cut(s)	24, 39, 314, 463, 638, 648
HpyF10VI	GCNNNNNNNGC	1 cut(s)	507
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	6 cut(s)	28, 70, 318, 379, 529, 621
HspAI	GCGC	1 cut(s)	590
Kzo9I	GATC	4 cut(s)	147, 489, 531, 790
LmnI	GCTCC	1 cut(s)	506
LweI	GCATC	3 cut(s)	18, 70, 472
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	5 cut(s)	49, 110, 557, 623, 678
MalI	GATC	4 cut(s)	149, 491, 533, 792
MboI	GATC	4 cut(s)	147, 489, 531, 790
MboII	GAAGA	2 cut(s)	71, 74
MflI	RGATCY	1 cut(s)	790
MhlI	GDGCHC	3 cut(s)	498, 525, 650
MluCI	AATT	2 cut(s)	352, 571
MmeI	TCCRAC	3 cut(s)	150, 165, 382
MnlI	CCTC	9 cut(s)	70, 134, 168, 349, 359, 361, 414, 658, 709
Mph1103I	ATGCAT	1 cut(s)	26
MseI	TTAA	2 cut(s)	609, 629
MspI	CCGG	4 cut(s)	6, 90, 180, 536
MspR9I	CCNGG	4 cut(s)	145, 181, 363, 536
MvaI	CCWGG	2 cut(s)	145, 363
MvnI	CGCG	1 cut(s)	554
MwoI	GCNNNNNNNGC	1 cut(s)	507
NciI	CCSGG	2 cut(s)	181, 536
NdeII	GATC	4 cut(s)	147, 489, 531, 790
NlaIII	CATG	6 cut(s)	28, 70, 318, 379, 529, 621
NlaIV	GGNNCC	2 cut(s)	402, 547
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	5 cut(s)	49, 110, 557, 623, 678
NsiI	ATGCAT	1 cut(s)	26
NspI	RCATGY	2 cut(s)	318, 621
NspV	TTCGAA	1 cut(s)	98
PaeI	GCATGC	2 cut(s)	318, 621
PaeR7I	CTCGAG	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	323
PflFI	GACNNNGTC	1 cut(s)	200
PfoI	TCCNGGA	1 cut(s)	534
PkrI	GCNGC	4 cut(s)	139, 142, 442, 509
Psp1406I	AACGTT	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	143, 361
PspGI	CCWGG	2 cut(s)	143, 361
PspN4I	GGNNCC	2 cut(s)	402, 547
PspPI	GGNCC	4 cut(s)	177, 379, 400, 546
PstNI	CAGNNNCTG	1 cut(s)	504
PsuI	RGATCY	1 cut(s)	790
PsyI	GACNNNGTC	1 cut(s)	200
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	2 cut(s)	609, 629
SatI	GCNGC	4 cut(s)	138, 141, 441, 508
Sau3AI	GATC	4 cut(s)	147, 489, 531, 790
Sau96I	GGNCC	4 cut(s)	177, 379, 400, 546
ScrFI	CCNGG	4 cut(s)	145, 181, 363, 536
SduI	GDGCHC	3 cut(s)	498, 525, 650
SfaNI	GCATC	3 cut(s)	18, 70, 472
Sfr274I	CTCGAG	1 cut(s)	327
SfuI	TTCGAA	1 cut(s)	98
SinI	GGWCC	3 cut(s)	379, 400, 546
SlaI	CTCGAG	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	327, 467
SmoI	CTYRAG	2 cut(s)	327, 467
SphI	GCATGC	2 cut(s)	318, 621
Sse9I	AATT	2 cut(s)	352, 571
SsiI	CCGC	9 cut(s)	138, 141, 162, 219, 440, 507, 510, 552, 621
SspI	AATATT	2 cut(s)	481, 805
StyD4I	CCNGG	4 cut(s)	143, 179, 361, 534
StyI	CCWWGG	1 cut(s)	603
TaaI	ACNGT	1 cut(s)	773
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	6 cut(s)	98, 126, 204, 328, 411, 530
TasI	AATT	2 cut(s)	352, 571
TauI	GCSGC	4 cut(s)	140, 143, 443, 510
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	2 cut(s)	609, 629
Tru9I	TTAA	2 cut(s)	609, 629
TscAI	CASTG	3 cut(s)	115, 462, 650
TseFI	GTSAC	5 cut(s)	49, 110, 557, 623, 678
Tsp45I	GTSAC	5 cut(s)	49, 110, 557, 623, 678
TspDTI	ATGAA	2 cut(s)	364, 553
TspGWI	ACGGA	2 cut(s)	254, 396
TspRI	CASTG	3 cut(s)	115, 462, 650
Tth111I	GACNNNGTC	1 cut(s)	200
VneI	GTGCAC	1 cut(s)	646
VpaK11BI	GGWCC	3 cut(s)	379, 400, 546
XceI	RCATGY	2 cut(s)	318, 621
XhoI	CTCGAG	1 cut(s)	327
Zsp2I	ATGCAT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.