Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005578

Physical Location & Seq

Genomic Coordinates Reverse (-)

5343288 .. 5345626

Gene Structure 2339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08030.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTTCCTCCATTTGACCTGACAAAGTACTCGGGAGTGGGGGCAGCCATTGAATATGCGGTATTGCATCTGAAGGTGGAAAATATTTTGGTGATTGGACACAGCTGCTGTGGAGGTATAAAGGGGCTCATGTCTATCCCTGATGATGGATCCACTGCTAGTGACTTCATAGAGAGCTGGGTGAAAATCTGCGCACCGGCAAAGGCCAAGATCAAAGCAGCATGCAGCGGTTTAAGTTTCACAGAGCAGTGCACCAACTTGGAGAAGGAGTCTGTGAATGTGTCATTGGCAAATTTATTGACATATCCATTTGTGAGAGAAGCGCTGGTGAACAAGACTCTGAGTCTGAAAGGCGGATACTACGATTTCGTCAAGGGCAGCTTCCAGCTTTGGGATCTTGATTTCAAAATTACACCTAATTTGACCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010033 GO:0010037 GO:0010119 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071944 GO:0072347 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

144

Amino Acids

15.5

Weight (kDa)

6.08

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23730 AT1G23730 AT1G70410 AT1G70410 AT1G70410
fragaria_vesca	FvH4_4g30530 FvH4_4g34390 FvH4_4g34390
malus_domestica	MD13G1092500.v1.1 MD16G1093300.v1.1
prunus_persica	Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1
pyrus_communis	pycom13g08030 pycom16g07930
rosa_chinensis	RchiOBHm_Chr4g0443811
rosa_laevigata	RLG00000005886
rosa_multiflora	Rmu_sc0005632.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384380
rosa_rugosa	Rorug04G0347600 Rorug04G0347600 Rorug04G0347600 Rorug04G0347600
rosa_samantha	Rh4AG407700 Rh4BG418700 Rh4CG432800
rosa_wichuraiana	Rw4G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	193
AciI	CCGC	3 cut(s)	59, 228, 354
AclWI	GGATC	3 cut(s)	144, 157, 402
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	1 cut(s)	29
AfeI	AGCGCT	1 cut(s)	324
AfiI	CCNNNNNNNGG	2 cut(s)	146, 391
AgsI	TTSAA	2 cut(s)	53, 406
AhdI	GACNNNNNGTC	1 cut(s)	342
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	4 cut(s)	105, 177, 381, 388
AluI	AGCT	4 cut(s)	105, 177, 381, 388
Alw21I	GWGCWC	1 cut(s)	254
Alw44I	GTGCAC	1 cut(s)	250
AlwI	GGATC	3 cut(s)	144, 157, 402
AlwNI	CAGNNNCTG	1 cut(s)	108
Ama87I	CYCGRG	1 cut(s)	31
Aor51HI	AGCGCT	1 cut(s)	324
AoxI	GGCC	1 cut(s)	204
ApaLI	GTGCAC	1 cut(s)	250
ApeKI	GCWGC	5 cut(s)	44, 105, 218, 225, 378
ApoI	RAATTY	1 cut(s)	292
AspLEI	GCGC	2 cut(s)	194, 325
AsuHPI	GGTGA	3 cut(s)	103, 193, 340
AvaI	CYCGRG	1 cut(s)	31
BaeGI	GKGCMC	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	254
BbvI	GCAGC	5 cut(s)	56, 92, 230, 237, 390
BccI	CCATC	1 cut(s)	140
BciVI	GTATCC	1 cut(s)	350
BfaI	CTAG	1 cut(s)	159
BfoI	RGCGCY	1 cut(s)	326
BfuI	GTATCC	1 cut(s)	350
BisI	GCNGC	5 cut(s)	45, 106, 219, 226, 379
BlsI	GCNGC	5 cut(s)	46, 107, 220, 227, 380
BmcAI	AGTACT	1 cut(s)	29
BmeRI	GACNNNNNGTC	1 cut(s)	342
BmeT110I	CYCGRG	1 cut(s)	31
BmiI	GGNNCC	2 cut(s)	6, 151
BmsI	GCATC	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 391
Bse118I	RCCGGY	1 cut(s)	196
BseLI	CCNNNNNNNGG	2 cut(s)	146, 391
BseMII	CTCAG	1 cut(s)	332
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	5 cut(s)	56, 92, 230, 237, 390
BseYI	CCCAGC	1 cut(s)	177
BshFI	GGCC	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	146, 391
BsnI	GGCC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	129, 254
Bsp143I	GATC	3 cut(s)	149, 210, 394
BspACI	CCGC	3 cut(s)	59, 228, 354
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	6, 151
BspPI	GGATC	3 cut(s)	144, 157, 402
BsrFI	RCCGGY	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	196
BssMI	GATC	3 cut(s)	149, 210, 394
Bst4CI	ACNGT	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	341
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	2 cut(s)	194, 325
BstKTI	GATC	3 cut(s)	152, 213, 397
BstMBI	GATC	3 cut(s)	149, 210, 394
BstNSI	RCATGY	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	254
BstV1I	GCAGC	5 cut(s)	56, 92, 230, 237, 390
BstX2I	RGATCY	2 cut(s)	149, 394
BstYI	RGATCY	2 cut(s)	149, 394
BsuI	GTATCC	1 cut(s)	350
BsuRI	GGCC	1 cut(s)	206
BtsI	GCAGTG	2 cut(s)	153, 254
BtsIMutI	CAGTG	2 cut(s)	153, 254
Cac8I	GCNNGC	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	108
CfoI	GCGC	2 cut(s)	194, 325
Cfr10I	RCCGGY	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	2 cut(s)	130, 222
CviJI	RGCY	7 cut(s)	47, 105, 127, 177, 206, 381, 388
CviKI_1	RGCY	7 cut(s)	47, 105, 127, 177, 206, 381, 388
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	3 cut(s)	151, 212, 396
DpnII	GATC	3 cut(s)	149, 210, 394
DriI	GACNNNNNGTC	1 cut(s)	342
Eam1105I	GACNNNNNGTC	1 cut(s)	342
EciI	GGCGGA	1 cut(s)	369
Eco24I	GRGCYC	1 cut(s)	129
Eco47III	AGCGCT	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	129
FaeI	CATG	2 cut(s)	133, 225
FaiI	YATR	7 cut(s)	57, 119, 131, 170, 223, 304, 430
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FatI	CATG	2 cut(s)	129, 221
Fnu4HI	GCNGC	5 cut(s)	45, 106, 219, 226, 379
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	5 cut(s)	45, 106, 219, 226, 379
FspBI	CTAG	1 cut(s)	159
FspI	TGCGCA	1 cut(s)	193
GlaI	GCGC	2 cut(s)	193, 324
GluI	GCNGC	5 cut(s)	45, 106, 219, 226, 379
GsaI	CCCAGC	1 cut(s)	181
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	1 cut(s)	197
HhaI	GCGC	2 cut(s)	194, 325
Hin1II	CATG	2 cut(s)	133, 225
Hin6I	GCGC	2 cut(s)	192, 323
HinP1I	GCGC	2 cut(s)	192, 323
HinfI	GANTC	3 cut(s)	269, 337, 343
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	3 cut(s)	103, 193, 340
Hpy166II	GTNNAC	2 cut(s)	252, 331
Hpy188I	TCNGA	3 cut(s)	72, 342, 348
Hpy188III	TCNNGA	2 cut(s)	33, 398
Hpy8I	GTNNAC	2 cut(s)	252, 331
HpyAV	CCTTC	2 cut(s)	67, 259
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	3 cut(s)	67, 225, 252
HpyF3I	CTNAG	1 cut(s)	341
Hsp92II	CATG	2 cut(s)	133, 225
HspAI	GCGC	2 cut(s)	192, 323
Kzo9I	GATC	3 cut(s)	149, 210, 394
LpnPI	CCDG	6 cut(s)	32, 153, 163, 210, 311, 398
Lsp1109I	GCAGC	5 cut(s)	56, 92, 230, 237, 390
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	3 cut(s)	151, 212, 396
MboI	GATC	3 cut(s)	149, 210, 394
MflI	RGATCY	2 cut(s)	149, 394
MhlI	GDGCHC	2 cut(s)	129, 254
MluCI	AATT	3 cut(s)	292, 408, 418
MlyI	GAGTC	3 cut(s)	278, 331, 352
MnlI	CCTC	2 cut(s)	18, 107
MseI	TTAA	1 cut(s)	233
MspA1I	CMGCKG	2 cut(s)	105, 228
MspI	CCGG	1 cut(s)	197
NdeII	GATC	3 cut(s)	149, 210, 394
NlaIII	CATG	2 cut(s)	133, 225
NlaIV	GGNNCC	2 cut(s)	6, 151
NmuCI	GTSAC	1 cut(s)	161
NsbI	TGCGCA	1 cut(s)	193
NspI	RCATGY	1 cut(s)	225
PaeI	GCATGC	1 cut(s)	225
PkrI	GCNGC	5 cut(s)	46, 107, 220, 227, 380
PleI	GAGTC	3 cut(s)	277, 331, 351
PpsI	GAGTC	3 cut(s)	277, 331, 351
PspFI	CCCAGC	1 cut(s)	177
PspN4I	GGNNCC	2 cut(s)	6, 151
PstNI	CAGNNNCTG	1 cut(s)	108
PsuI	RGATCY	2 cut(s)	149, 394
PvuII	CAGCTG	1 cut(s)	105
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	5 cut(s)	45, 106, 219, 226, 379
Sau3AI	GATC	3 cut(s)	149, 210, 394
ScaI	AGTACT	1 cut(s)	29
SchI	GAGTC	3 cut(s)	278, 331, 352
SduI	GDGCHC	2 cut(s)	129, 254
SetI	ASST	8 cut(s)	21, 78, 107, 118, 179, 383, 390, 418
SfaNI	GCATC	1 cut(s)	76
SphI	GCATGC	1 cut(s)	225
Sse9I	AATT	3 cut(s)	292, 408, 418
SsiI	CCGC	3 cut(s)	59, 228, 354
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	427
TasI	AATT	3 cut(s)	292, 408, 418
TatI	WGTACW	1 cut(s)	27
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	2 cut(s)	160, 254
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	5 cut(s)	44, 105, 218, 225, 378
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	157
TspRI	CASTG	2 cut(s)	160, 254
VneI	GTGCAC	1 cut(s)	250
XapI	RAATTY	1 cut(s)	292
XceI	RCATGY	1 cut(s)	225
XspI	CTAG	1 cut(s)	159
ZrmI	AGTACT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.