Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005578

Physical Location & Seq

Genomic Coordinates Reverse (-)

5243101 .. 5246701

Gene Structure 3601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g07930.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCCAAACCATCATAGCTTTACAATTCAAATCTCTCGAATTTTCCAAACGCCGGATCCGCAGAAGGAAGACATGGCGAAGGACTCGTACGAGGATGCCATTGCCGGACTTTCCAAGCTCCTAAGTGAAAAGGCTGACCTCGAGGGCGTCGCCGCCGCCAAGATCAAGCAGATAACGGCTGAGCTGGCGTCGGCTGACTCGACCGACGCGGTCGAGAGGATCAAAACCGGGTTCACCCATTTCAAGAAGGAGAAATACGAGAAAGATGTTGATTTGTACGCCAAACTGGCCACAGGCCAAAGTCCCAAGTTTATGGTATTTGCATGCTCAGACTCCCGAGTTTGCCCCTCGCACATCCTCAATTTCCAACCAGGGGAGGCCTTTGTGGTCCGAAACATCGCTAACATGGTCCCTCCATATGACCTGACAAAGTACTCGGGAATGGGGGCGGCCATTGAATATGCGGTATTGCATCTGAAGGTGGAGAATATTTTGGTGATTGGACACAGCTGCTGTGGAGGTATAAAGGGGCTCATGTCTATCCCAGATGATGGGTCCACTGCTAGTGACTTCATAGAGAGCTGGGTGAAAATCTGTTCACCGGCAAAGACCAAGATTAAAGCTGCATACAGTGGTTTGAGTTTCACGGAGCAGTGCACCAACTTGGAGAAGGAGTCCGTGAACATCTCATTGGGAAACTTACTGACATATCCATTTGTGAGAGAAGCGGTGGTGAACAAGACTCTGAGTCTGAAAGGTGGATATTACAATTTCGTCAAGGGCAGCTTCCAGCTCTGGGATCTTGATTTCAAAATTACACCTAATTTGACTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010033 GO:0010037 GO:0010119 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071944 GO:0072347 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

279

Amino Acids

30.57

Weight (kDa)

6.32

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23730 AT1G23730 AT1G70410 AT1G70410 AT1G70410
fragaria_vesca	FvH4_4g30530 FvH4_4g34390 FvH4_4g34390
malus_domestica	MD13G1092500.v1.1 MD16G1093300.v1.1
prunus_persica	Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1
pyrus_communis	pycom13g08030 pycom16g07930
rosa_chinensis	RchiOBHm_Chr4g0443811
rosa_laevigata	RLG00000005886
rosa_multiflora	Rmu_sc0005632.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384380
rosa_rugosa	Rorug04G0347600 Rorug04G0347600 Rorug04G0347600 Rorug04G0347600
rosa_samantha	Rh4AG407700 Rh4BG418700 Rh4CG432800
rosa_wichuraiana	Rw4G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	140
AccB7I	CCANNNNNTGG	1 cut(s)	551
AccII	CGCG	1 cut(s)	209
AciI	CCGC	7 cut(s)	59, 153, 156, 209, 449, 464, 728
AclWI	GGATC	4 cut(s)	50, 63, 227, 807
AcoI	YGGCCR	2 cut(s)	288, 450
AcsI	RAATTY	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	497
AcyI	GRCGYC	2 cut(s)	147, 188
AfaI	GTAC	3 cut(s)	89, 278, 434
AfiI	CCNNNNNNNGG	4 cut(s)	52, 373, 551, 796
AgsI	TTSAA	4 cut(s)	29, 244, 458, 811
AhdI	GACNNNNNGTC	1 cut(s)	747
AjnI	CCWGG	1 cut(s)	370
AjuI	GAANNNNNNNTTGG	2 cut(s)	674, 706
AluBI	AGCT	8 cut(s)	18, 118, 184, 510, 582, 623, 786, 793
AluI	AGCT	8 cut(s)	18, 118, 184, 510, 582, 623, 786, 793
Alw21I	GWGCWC	1 cut(s)	659
Alw44I	GTGCAC	1 cut(s)	655
AlwI	GGATC	4 cut(s)	50, 63, 227, 807
AlwNI	CAGNNNCTG	1 cut(s)	513
Ama87I	CYCGRG	3 cut(s)	140, 336, 436
AoxI	GGCC	4 cut(s)	288, 295, 378, 450
ApaLI	GTGCAC	1 cut(s)	655
ApeKI	GCWGC	3 cut(s)	510, 623, 783
ApoI	RAATTY	1 cut(s)	39
AspS9I	GGNCC	3 cut(s)	388, 409, 555
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	5 cut(s)	226, 508, 591, 598, 745
AvaI	CYCGRG	3 cut(s)	140, 336, 436
AvaII	GGWCC	3 cut(s)	388, 409, 555
BaeGI	GKGCMC	1 cut(s)	659
BalI	TGGCCA	1 cut(s)	290
BamHI	GGATCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	534
BarI	GAAGNNNNNNTAC	4 cut(s)	71, 103, 239, 271
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	3 cut(s)	497, 610, 795
BccI	CCATC	2 cut(s)	18, 545
BceAI	ACGGC	1 cut(s)	192
BciT130I	CCWGG	1 cut(s)	372
BcnI	CCSGG	1 cut(s)	229
BfaI	CTAG	1 cut(s)	564
BglI	GCCNNNNNGGC	1 cut(s)	287
BisI	GCNGC	6 cut(s)	153, 156, 450, 511, 624, 784
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	6 cut(s)	154, 157, 451, 512, 625, 785
BmcAI	AGTACT	1 cut(s)	434
Bme1390I	CCNGG	2 cut(s)	229, 372
Bme18I	GGWCC	3 cut(s)	388, 409, 555
BmeRI	GACNNNNNGTC	1 cut(s)	747
BmeT110I	CYCGRG	3 cut(s)	140, 336, 436
BmgT120I	GGNCC	3 cut(s)	388, 409, 555
BmiI	GGNNCC	3 cut(s)	57, 411, 556
BmrFI	CCNGG	2 cut(s)	229, 372
BmsI	GCATC	2 cut(s)	85, 481
BpiI	GAAGAC	1 cut(s)	75
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuMI	CCSGG	1 cut(s)	229
BsaHI	GRCGYC	2 cut(s)	147, 188
BsaJI	CCNNGG	1 cut(s)	371
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 373, 551, 796
Bse118I	RCCGGY	1 cut(s)	601
Bse1I	ACTGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	371
BseGI	GGATG	2 cut(s)	100, 354
BseLI	CCNNNNNNNGG	4 cut(s)	52, 373, 551, 796
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	3 cut(s)	171, 342, 737
BseNI	ACTGG	1 cut(s)	291
BseSI	GKGCMC	1 cut(s)	659
BseXI	GCAGC	3 cut(s)	497, 610, 795
BseYI	CCCAGC	1 cut(s)	582
Bsh1236I	CGCG	1 cut(s)	209
Bsh1285I	CGRYCG	2 cut(s)	204, 213
BshFI	GGCC	4 cut(s)	290, 297, 380, 452
BsiEI	CGRYCG	2 cut(s)	204, 213
BsiHKAI	GWGCWC	1 cut(s)	659
BsiHKCI	CYCGRG	3 cut(s)	140, 336, 436
BsiSI	CCGG	4 cut(s)	53, 105, 228, 602
BsiWI	CGTACG	1 cut(s)	87
BslFI	GGGAC	2 cut(s)	288, 395
BslI	CCNNNNNNNGG	4 cut(s)	52, 373, 551, 796
BsmFI	GGGAC	2 cut(s)	288, 395
BsnI	GGCC	4 cut(s)	290, 297, 380, 452
BsoBI	CYCGRG	3 cut(s)	140, 336, 436
Bsp1286I	GDGCHC	2 cut(s)	534, 659
Bsp143I	GATC	4 cut(s)	55, 162, 219, 799
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	7 cut(s)	59, 153, 156, 209, 449, 464, 728
BspANI	GGCC	4 cut(s)	290, 297, 380, 452
BspCNI	CTCAG	3 cut(s)	172, 341, 738
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	3 cut(s)	57, 411, 556
BspPI	GGATC	4 cut(s)	50, 63, 227, 807
BsrDI	GCAATG	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	291
BssAI	RCCGGY	1 cut(s)	601
BssECI	CCNNGG	1 cut(s)	371
BssMI	GATC	4 cut(s)	55, 162, 219, 799
BssNI	GRCGYC	2 cut(s)	147, 188
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	632, 832
BstACI	GRCGYC	2 cut(s)	147, 188
BstC8I	GCNNGC	2 cut(s)	186, 325
BstDEI	CTNAG	4 cut(s)	122, 180, 328, 746
BstF5I	GGATG	2 cut(s)	100, 354
BstFNI	CGCG	1 cut(s)	209
BstKTI	GATC	4 cut(s)	58, 165, 222, 802
BstMBI	GATC	4 cut(s)	55, 162, 219, 799
BstMCI	CGRYCG	2 cut(s)	204, 213
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 185, 287
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	1 cut(s)	327
BstSCI	CCNGG	2 cut(s)	227, 370
BstSLI	GKGCMC	1 cut(s)	659
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	3 cut(s)	497, 610, 795
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	2 cut(s)	55, 799
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	2 cut(s)	55, 799
BsuRI	GGCC	4 cut(s)	290, 297, 380, 452
BtgZI	GCGATG	1 cut(s)	382
BtsCI	GGATG	2 cut(s)	100, 354
BtsI	GCAGTG	2 cut(s)	558, 659
BtsIMutI	CAGTG	3 cut(s)	558, 637, 659
Cac8I	GCNNGC	2 cut(s)	186, 325
CaiI	CAGNNNCTG	1 cut(s)	513
Cfr10I	RCCGGY	1 cut(s)	601
Cfr13I	GGNCC	3 cut(s)	388, 409, 555
CseI	GACGC	3 cut(s)	136, 177, 215
Csp6I	GTAC	3 cut(s)	88, 277, 433
CviAII	CATG	4 cut(s)	73, 324, 406, 535
CviQI	GTAC	3 cut(s)	88, 277, 433
DdeI	CTNAG	4 cut(s)	122, 180, 328, 746
DpnI	GATC	4 cut(s)	57, 164, 221, 801
DpnII	GATC	4 cut(s)	55, 162, 219, 799
DriI	GACNNNNNGTC	1 cut(s)	747
EaeI	YGGCCR	2 cut(s)	288, 450
Eam1105I	GACNNNNNGTC	1 cut(s)	747
Eco147I	AGGCCT	1 cut(s)	380
Eco24I	GRGCYC	1 cut(s)	534
Eco47I	GGWCC	3 cut(s)	388, 409, 555
Eco57I	CTGAAG	1 cut(s)	497
Eco88I	CYCGRG	3 cut(s)	140, 336, 436
EcoRII	CCWGG	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	534
FaeI	CATG	4 cut(s)	76, 327, 409, 538
FalI	AAGNNNNNCTT	2 cut(s)	770, 802
FaqI	GGGAC	2 cut(s)	288, 395
FatI	CATG	4 cut(s)	72, 323, 405, 534
FauNDI	CATATG	1 cut(s)	418
Fnu4HI	GCNGC	6 cut(s)	153, 156, 450, 511, 624, 784
FokI	GGATG	2 cut(s)	107, 341
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	6 cut(s)	153, 156, 450, 511, 624, 784
FspBI	CTAG	1 cut(s)	564
GluI	GCNGC	6 cut(s)	153, 156, 450, 511, 624, 784
GsaI	CCCAGC	1 cut(s)	586
HaeIII	GGCC	4 cut(s)	290, 297, 380, 452
HapII	CCGG	4 cut(s)	53, 105, 228, 602
HgaI	GACGC	3 cut(s)	136, 177, 215
Hin1I	GRCGYC	2 cut(s)	147, 188
Hin1II	CATG	4 cut(s)	76, 327, 409, 538
HinfI	GANTC	6 cut(s)	83, 197, 332, 674, 742, 748
HpaII	CCGG	4 cut(s)	53, 105, 228, 602
HphI	GGTGA	5 cut(s)	226, 508, 591, 598, 745
Hpy166II	GTNNAC	6 cut(s)	234, 558, 599, 657, 682, 736
Hpy188I	TCNGA	5 cut(s)	331, 392, 477, 747, 753
Hpy188III	TCNNGA	6 cut(s)	36, 214, 244, 336, 438, 803
Hpy8I	GTNNAC	6 cut(s)	234, 558, 599, 657, 682, 736
Hpy99I	CGWCG	3 cut(s)	152, 193, 209
HpyAV	CCTTC	5 cut(s)	58, 73, 241, 472, 664
HpyCH4III	ACNGT	2 cut(s)	632, 832
HpyCH4V	TGCA	4 cut(s)	323, 472, 626, 657
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 185, 287
HpyF3I	CTNAG	4 cut(s)	122, 180, 328, 746
Hsp92I	GRCGYC	2 cut(s)	147, 188
Hsp92II	CATG	4 cut(s)	76, 327, 409, 538
Kzo9I	GATC	4 cut(s)	55, 162, 219, 799
LmnI	GCTCC	2 cut(s)	123, 649
Lsp1109I	GCAGC	3 cut(s)	497, 610, 795
LweI	GCATC	2 cut(s)	85, 481
MaeI	CTAG	1 cut(s)	564
MaeIII	GTNAC	1 cut(s)	566
MalI	GATC	4 cut(s)	57, 164, 221, 801
MboI	GATC	4 cut(s)	55, 162, 219, 799
MboII	GAAGA	1 cut(s)	80
MflI	RGATCY	2 cut(s)	55, 799
MhlI	GDGCHC	2 cut(s)	534, 659
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	6 cut(s)	24, 39, 361, 769, 813, 823
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	6 cut(s)	77, 191, 326, 683, 736, 757
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	9 cut(s)	85, 136, 149, 210, 358, 368, 370, 423, 512
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	1 cut(s)	618
Msp20I	TGGCCA	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	510
MspI	CCGG	4 cut(s)	53, 105, 228, 602
MspR9I	CCNGG	2 cut(s)	229, 372
MvaI	CCWGG	1 cut(s)	372
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	3 cut(s)	58, 185, 287
NciI	CCSGG	1 cut(s)	229
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	4 cut(s)	55, 162, 219, 799
NlaIII	CATG	4 cut(s)	76, 327, 409, 538
NlaIV	GGNNCC	3 cut(s)	57, 411, 556
NmuCI	GTSAC	1 cut(s)	566
NspI	RCATGY	1 cut(s)	327
PaeI	GCATGC	1 cut(s)	327
PaeR7I	CTCGAG	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
Pfl23II	CGTACG	1 cut(s)	87
PflFI	GACNNNGTC	1 cut(s)	209
PflMI	CCANNNNNTGG	1 cut(s)	551
PkrI	GCNGC	6 cut(s)	154, 157, 451, 512, 625, 785
PleI	GAGTC	6 cut(s)	77, 191, 326, 682, 736, 756
PpsI	GAGTC	6 cut(s)	77, 191, 326, 682, 736, 756
Psp6I	CCWGG	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	370
PspLI	CGTACG	1 cut(s)	87
PspN4I	GGNNCC	3 cut(s)	57, 411, 556
PspPI	GGNCC	3 cut(s)	388, 409, 555
PspXI	VCTCGAGB	1 cut(s)	140
PstNI	CAGNNNCTG	1 cut(s)	513
PsuI	RGATCY	2 cut(s)	55, 799
PsyI	GACNNNGTC	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	510
RsaI	GTAC	3 cut(s)	89, 278, 434
RsaNI	GTAC	3 cut(s)	88, 277, 433
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	6 cut(s)	153, 156, 450, 511, 624, 784
Sau3AI	GATC	4 cut(s)	55, 162, 219, 799
Sau96I	GGNCC	3 cut(s)	388, 409, 555
ScaI	AGTACT	1 cut(s)	434
SchI	GAGTC	6 cut(s)	77, 191, 326, 683, 736, 757
ScrFI	CCNGG	2 cut(s)	229, 372
SduI	GDGCHC	2 cut(s)	534, 659
SfaNI	GCATC	2 cut(s)	85, 481
Sfr274I	CTCGAG	1 cut(s)	140
SinI	GGWCC	3 cut(s)	388, 409, 555
SlaI	CTCGAG	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
SphI	GCATGC	1 cut(s)	327
Sse9I	AATT	6 cut(s)	24, 39, 361, 769, 813, 823
SseBI	AGGCCT	1 cut(s)	380
SsiI	CCGC	7 cut(s)	59, 153, 156, 209, 449, 464, 728
SspI	AATATT	1 cut(s)	490
SspMI	CTAG	1 cut(s)	564
StuI	AGGCCT	1 cut(s)	380
StyD4I	CCNGG	2 cut(s)	227, 370
TaaI	ACNGT	2 cut(s)	632, 832
TaqI	TCGA	4 cut(s)	37, 141, 200, 213
TaqII	GACCGA	1 cut(s)	218
TasI	AATT	6 cut(s)	24, 39, 361, 769, 813, 823
TatI	WGTACW	1 cut(s)	432
TauI	GCSGC	3 cut(s)	155, 158, 452
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TscAI	CASTG	3 cut(s)	565, 637, 659
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	3 cut(s)	510, 623, 783
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	1 cut(s)	562
TspGWI	ACGGA	2 cut(s)	662, 667
TspRI	CASTG	3 cut(s)	565, 637, 659
Tth111I	GACNNNGTC	1 cut(s)	209
Van91I	CCANNNNNTGG	1 cut(s)	551
VneI	GTGCAC	1 cut(s)	655
VpaK11BI	GGWCC	3 cut(s)	388, 409, 555
XapI	RAATTY	1 cut(s)	39
XceI	RCATGY	1 cut(s)	327
XhoI	CTCGAG	1 cut(s)	140
XspI	CTAG	1 cut(s)	564
ZrmI	AGTACT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.