Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005578

Physical Location & Seq

Genomic Coordinates Forward (+)

63778953 .. 63788345

Gene Structure 9393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCCGGAACGTTTAGAAAATGTATGATGCTCTGTTGCACAGCAAAGAAGGAAGAAGACATGGCTTACGAGGATGCCATTGCCGGACTTTCGAAGCTTCTCAGTGACAAAGCTGACCTCGAAGGCGTCGCCGCCGCCAGGATCAAGCAGATAACCGCCGAGTTGGAGAGGGCCGGGTCGGATGGGTTTGACCCGGTCGAGAAGCTCAAAAGCGGGTTCGTCCACTTCAAGACGGAGAAGTTTGAGAAAGATGTGGACTTGTACGGCCAGCTCGCCAAAGGCCAAAGCCCCAAGTTTATGGTATTTGCATGCTCGGATTCTCGAGTTTGCCCCTCCCACATCCTCAATTTCCAACCAGGGGAGGCTTTCATGGTCCGAAACATTGCCAATATGGTCCCTCCGTTCGACACGACAAAATACTCGGGAGTGGGGGCGGCCATTGAATACGCAGTATTGCATCTCAAGGTGGAGAATATTGTGGTGATCGGGCACAGCTCCTGTGGCGGCATAAAGGGGCTCATGTCGATCCCGGACGATGGGACCACCGCGAGTGACTTCATTGAGAATTGGGTCAAAATCTGTGCGCCAGCAAAGACCAAGGTTAAATCAGCATGCGGTGACTTAAGTTTTTCAGAGCAGTGCACCAACTTGGAGAAGGAGGCTGTGAATGTGTCACTTGCGAACTTACTGACATACCCGTTTGTTAGAGAGGCCGTGGTCAACAATAAGCTGGCTCTGAAGGGTGGATACTATGATTTTGTCAACGGTGGTTTCCAGCTCTGGGATCTTGATTTCAATATTACACCCAATATGATTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010033 GO:0010037 GO:0010119 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071944 GO:0072347 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

273

Amino Acids

29.8

Weight (kDa)

5.49

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	100 - 256	1.1e-44	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23730 AT1G23730 AT1G70410 AT1G70410 AT1G70410
fragaria_vesca	FvH4_4g30530 FvH4_4g34390 FvH4_4g34390
malus_domestica	MD13G1092500.v1.1 MD16G1093300.v1.1
prunus_persica	Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1
pyrus_communis	pycom13g08030 pycom16g07930
rosa_chinensis	RchiOBHm_Chr4g0443811
rosa_laevigata	RLG00000005886
rosa_multiflora	Rmu_sc0005632.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384380
rosa_rugosa	Rorug04G0347600 Rorug04G0347600 Rorug04G0347600 Rorug04G0347600
rosa_samantha	Rh4AG407700 Rh4BG418700 Rh4CG432800
rosa_wichuraiana	Rw4G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	548
AciI	CCGC	8 cut(s)	132, 135, 156, 213, 434, 504, 546, 615
AclI	AACGTT	1 cut(s)	11
AclWI	GGATC	3 cut(s)	149, 520, 792
AcoI	YGGCCR	3 cut(s)	3, 265, 435
AcuI	CTGAAG	1 cut(s)	758
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	4 cut(s)	138, 358, 536, 781
AflII	CTTAAG	1 cut(s)	622
AgsI	TTSAA	3 cut(s)	229, 443, 796
AjnI	CCWGG	2 cut(s)	137, 355
AluBI	AGCT	7 cut(s)	97, 113, 205, 271, 495, 730, 778
AluI	AGCT	7 cut(s)	97, 113, 205, 271, 495, 730, 778
Alw21I	GWGCWC	1 cut(s)	644
Alw44I	GTGCAC	1 cut(s)	640
AlwI	GGATC	3 cut(s)	149, 520, 792
AlwNI	CAGNNNCTG	1 cut(s)	498
Ama87I	CYCGRG	2 cut(s)	321, 421
AoxI	GGCC	6 cut(s)	3, 171, 265, 280, 435, 711
ApaLI	GTGCAC	1 cut(s)	640
AspLEI	GCGC	1 cut(s)	586
AspS9I	GGNCC	4 cut(s)	171, 373, 394, 540
AsuC2I	CCSGG	3 cut(s)	175, 194, 530
AsuHPI	GGTGA	2 cut(s)	493, 629
AsuII	TTCGAA	1 cut(s)	92
AvaI	CYCGRG	2 cut(s)	321, 421
AvaII	GGWCC	3 cut(s)	373, 394, 540
BaeGI	GKGCMC	2 cut(s)	492, 644
BanII	GRGCYC	1 cut(s)	519
BarI	GAAGNNNNNNTAC	2 cut(s)	731, 763
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	644
BccI	CCATC	2 cut(s)	176, 530
BceAI	ACGGC	2 cut(s)	280, 698
BciT130I	CCWGG	2 cut(s)	139, 357
BciVI	GTATCC	1 cut(s)	740
BcnI	CCSGG	3 cut(s)	175, 194, 530
BfrI	CTTAAG	1 cut(s)	622
BfuI	GTATCC	1 cut(s)	740
BisI	GCNGC	4 cut(s)	132, 135, 435, 505
BlsI	GCNGC	4 cut(s)	133, 136, 436, 506
Bme1390I	CCNGG	5 cut(s)	139, 175, 194, 357, 530
Bme18I	GGWCC	3 cut(s)	373, 394, 540
BmeT110I	CYCGRG	2 cut(s)	321, 421
BmgT120I	GGNCC	4 cut(s)	171, 373, 394, 540
BmiI	GGNNCC	2 cut(s)	396, 541
BmrFI	CCNGG	5 cut(s)	139, 175, 194, 357, 530
BmsI	GCATC	3 cut(s)	18, 64, 466
BpiI	GAAGAC	1 cut(s)	63
Bpu14I	TTCGAA	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	446
BpuMI	CCSGG	3 cut(s)	175, 194, 530
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	3 cut(s)	356, 597, 714
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 358, 536, 781
Bse3DI	GCAATG	2 cut(s)	78, 381
BseBI	CCWGG	2 cut(s)	139, 357
BseDI	CCNNGG	3 cut(s)	356, 597, 714
BseGI	GGATG	3 cut(s)	79, 187, 339
BseLI	CCNNNNNNNGG	4 cut(s)	138, 358, 536, 781
BseMI	GCAATG	2 cut(s)	78, 381
BseMII	CTCAG	1 cut(s)	115
BseSI	GKGCMC	2 cut(s)	492, 644
Bsh1236I	CGCG	1 cut(s)	548
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	6 cut(s)	5, 173, 267, 282, 437, 713
BsiEI	CGRYCG	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	644
BsiHKCI	CYCGRG	2 cut(s)	321, 421
BsiSI	CCGG	5 cut(s)	6, 84, 174, 194, 530
BslFI	GGGAC	2 cut(s)	380, 553
BslI	CCNNNNNNNGG	4 cut(s)	138, 358, 536, 781
BsmFI	GGGAC	2 cut(s)	380, 553
BsnI	GGCC	6 cut(s)	5, 173, 267, 282, 437, 713
BsoBI	CYCGRG	2 cut(s)	321, 421
Bsp119I	TTCGAA	1 cut(s)	92
Bsp1286I	GDGCHC	3 cut(s)	492, 519, 644
Bsp143I	GATC	4 cut(s)	141, 483, 525, 784
BspACI	CCGC	8 cut(s)	132, 135, 156, 213, 434, 504, 546, 615
BspANI	GGCC	6 cut(s)	5, 173, 267, 282, 437, 713
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	548
BspLI	GGNNCC	2 cut(s)	396, 541
BspPI	GGATC	3 cut(s)	149, 520, 792
BspT104I	TTCGAA	1 cut(s)	92
BspTI	CTTAAG	1 cut(s)	622
BsrDI	GCAATG	2 cut(s)	78, 381
BssECI	CCNNGG	3 cut(s)	356, 597, 714
BssMI	GATC	4 cut(s)	141, 483, 525, 784
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	597
Bst2UI	CCWGG	2 cut(s)	139, 357
Bst4CI	ACNGT	1 cut(s)	767
BstACI	GRCGYC	1 cut(s)	126
BstAFI	CTTAAG	1 cut(s)	622
BstBI	TTCGAA	1 cut(s)	92
BstC8I	GCNNGC	6 cut(s)	269, 273, 310, 588, 613, 732
BstDEI	CTNAG	1 cut(s)	101
BstDSI	CCRYGG	1 cut(s)	714
BstF5I	GGATG	3 cut(s)	79, 187, 339
BstFNI	CGCG	1 cut(s)	548
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	4 cut(s)	144, 486, 528, 787
BstMBI	GATC	4 cut(s)	141, 483, 525, 784
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	1 cut(s)	501
BstNI	CCWGG	2 cut(s)	139, 357
BstNSI	RCATGY	2 cut(s)	312, 615
BstSCI	CCNGG	5 cut(s)	137, 173, 192, 355, 528
BstSLI	GKGCMC	2 cut(s)	492, 644
BstUI	CGCG	1 cut(s)	548
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	784
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	784
BsuI	GTATCC	1 cut(s)	740
BsuRI	GGCC	6 cut(s)	5, 173, 267, 282, 437, 713
BtgI	CCRYGG	1 cut(s)	714
BtsCI	GGATG	3 cut(s)	79, 187, 339
BtsI	GCAGTG	1 cut(s)	644
BtsIMutI	CAGTG	2 cut(s)	109, 644
Cac8I	GCNNGC	6 cut(s)	269, 273, 310, 588, 613, 732
CaiI	CAGNNNCTG	1 cut(s)	498
CfoI	GCGC	1 cut(s)	586
Cfr13I	GGNCC	4 cut(s)	171, 373, 394, 540
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	5 cut(s)	61, 309, 370, 520, 612
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	4 cut(s)	143, 485, 527, 786
DpnII	GATC	4 cut(s)	141, 483, 525, 784
EaeI	YGGCCR	3 cut(s)	3, 265, 435
Eco130I	CCWWGG	1 cut(s)	597
Eco24I	GRGCYC	1 cut(s)	519
Eco47I	GGWCC	3 cut(s)	373, 394, 540
Eco57I	CTGAAG	1 cut(s)	758
Eco88I	CYCGRG	2 cut(s)	321, 421
EcoRII	CCWGG	2 cut(s)	137, 355
EcoT14I	CCWWGG	1 cut(s)	597
EcoT38I	GRGCYC	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	5 cut(s)	64, 312, 373, 523, 615
FaqI	GGGAC	2 cut(s)	380, 553
FatI	CATG	5 cut(s)	60, 308, 369, 519, 611
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	4 cut(s)	132, 135, 435, 505
FokI	GGATG	3 cut(s)	86, 194, 326
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	4 cut(s)	132, 135, 435, 505
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	4 cut(s)	132, 135, 435, 505
HaeIII	GGCC	6 cut(s)	5, 173, 267, 282, 437, 713
HapII	CCGG	5 cut(s)	6, 84, 174, 194, 530
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	586
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	5 cut(s)	64, 312, 373, 523, 615
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HincII	GTYRAC	2 cut(s)	721, 763
HindII	GTYRAC	2 cut(s)	721, 763
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	5 cut(s)	6, 84, 174, 194, 530
HphI	GGTGA	2 cut(s)	493, 629
Hpy166II	GTNNAC	5 cut(s)	223, 256, 642, 721, 763
Hpy188I	TCNGA	5 cut(s)	181, 316, 377, 634, 738
Hpy188III	TCNNGA	5 cut(s)	199, 229, 321, 423, 788
Hpy8I	GTNNAC	5 cut(s)	223, 256, 642, 721, 763
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	4 cut(s)	43, 116, 649, 733
HpyCH4III	ACNGT	1 cut(s)	767
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	4 cut(s)	39, 308, 457, 642
HpyF10VI	GCNNNNNNNGC	1 cut(s)	501
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	5 cut(s)	64, 312, 373, 523, 615
HspAI	GCGC	1 cut(s)	584
Kzo9I	GATC	4 cut(s)	141, 483, 525, 784
LmnI	GCTCC	1 cut(s)	500
LweI	GCATC	3 cut(s)	18, 64, 466
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	4 cut(s)	104, 551, 617, 672
MalI	GATC	4 cut(s)	143, 485, 527, 786
MboI	GATC	4 cut(s)	141, 483, 525, 784
MboII	GAAGA	2 cut(s)	65, 68
MflI	RGATCY	1 cut(s)	784
MhlI	GDGCHC	3 cut(s)	492, 519, 644
MluCI	AATT	2 cut(s)	346, 565
MmeI	TCCRAC	3 cut(s)	144, 159, 376
MnlI	CCTC	9 cut(s)	64, 128, 162, 343, 353, 355, 408, 652, 703
MseI	TTAA	2 cut(s)	603, 623
MspCI	CTTAAG	1 cut(s)	622
MspI	CCGG	5 cut(s)	6, 84, 174, 194, 530
MspR9I	CCNGG	5 cut(s)	139, 175, 194, 357, 530
MvaI	CCWGG	2 cut(s)	139, 357
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	1 cut(s)	501
NciI	CCSGG	3 cut(s)	175, 194, 530
NdeII	GATC	4 cut(s)	141, 483, 525, 784
NlaIII	CATG	5 cut(s)	64, 312, 373, 523, 615
NlaIV	GGNNCC	2 cut(s)	396, 541
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	4 cut(s)	104, 551, 617, 672
NspI	RCATGY	2 cut(s)	312, 615
NspV	TTCGAA	1 cut(s)	92
PaeI	GCATGC	2 cut(s)	312, 615
PaeR7I	CTCGAG	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	317
PflFI	GACNNNGTC	1 cut(s)	194
PfoI	TCCNGGA	1 cut(s)	528
PkrI	GCNGC	4 cut(s)	133, 136, 436, 506
Psp1406I	AACGTT	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	137, 355
PspGI	CCWGG	2 cut(s)	137, 355
PspN4I	GGNNCC	2 cut(s)	396, 541
PspPI	GGNCC	4 cut(s)	171, 373, 394, 540
PstNI	CAGNNNCTG	1 cut(s)	498
PsuI	RGATCY	1 cut(s)	784
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SaqAI	TTAA	2 cut(s)	603, 623
SatI	GCNGC	4 cut(s)	132, 135, 435, 505
Sau3AI	GATC	4 cut(s)	141, 483, 525, 784
Sau96I	GGNCC	4 cut(s)	171, 373, 394, 540
ScrFI	CCNGG	5 cut(s)	139, 175, 194, 357, 530
SduI	GDGCHC	3 cut(s)	492, 519, 644
SfaNI	GCATC	3 cut(s)	18, 64, 466
Sfr274I	CTCGAG	1 cut(s)	321
SfuI	TTCGAA	1 cut(s)	92
SinI	GGWCC	3 cut(s)	373, 394, 540
SlaI	CTCGAG	1 cut(s)	321
SmlI	CTYRAG	3 cut(s)	321, 461, 622
SmoI	CTYRAG	3 cut(s)	321, 461, 622
SphI	GCATGC	2 cut(s)	312, 615
Sse9I	AATT	2 cut(s)	346, 565
SsiI	CCGC	8 cut(s)	132, 135, 156, 213, 434, 504, 546, 615
SspI	AATATT	2 cut(s)	475, 799
StyD4I	CCNGG	5 cut(s)	137, 173, 192, 355, 528
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	1 cut(s)	767
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	6 cut(s)	92, 120, 198, 322, 405, 524
TasI	AATT	2 cut(s)	346, 565
TauI	GCSGC	4 cut(s)	134, 137, 437, 507
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	2 cut(s)	603, 623
Tru9I	TTAA	2 cut(s)	603, 623
TscAI	CASTG	2 cut(s)	109, 644
TseFI	GTSAC	4 cut(s)	104, 551, 617, 672
Tsp45I	GTSAC	4 cut(s)	104, 551, 617, 672
TspDTI	ATGAA	2 cut(s)	358, 547
TspGWI	ACGGA	2 cut(s)	248, 390
TspRI	CASTG	2 cut(s)	109, 644
Tth111I	GACNNNGTC	1 cut(s)	194
Vha464I	CTTAAG	1 cut(s)	622
VneI	GTGCAC	1 cut(s)	640
VpaK11BI	GGWCC	3 cut(s)	373, 394, 540
XceI	RCATGY	2 cut(s)	312, 615
XhoI	CTCGAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.