Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005632.1

Orthogroup ID

OG0005578

Physical Location & Seq

Genomic Coordinates Forward (+)

15381 .. 20896

Gene Structure 5516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005632.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

atggcttacgaggatgccattgccggactttcgaagcttctcagtgacaaagctgacctcgaaggcgtcgccgccgccaggatcaaccagataaccgccgagttggagagggctgggtcggatgggtttgacccggtcgagaagctcaaaagcgggttcgtccacttcaagacggagaagtttgagaaagatgtggacttgtacggccagctcgccaaaggccaaagccccaagtttatggtatttgcatgctcggattctcgagtttgcccctcccacatcctcaatttccaaccaggggaggctttcatggtccgaaacattgccaatatggtccctccgttcgacacgacaaaatactcgggagtgggggcggccattgaatacgcagtattgcatctcaaggtggagaatattgtggtgatcgggcacagctcctgcggcggtataaaggggctcatgtcgatcccggacgatgggaccaccgcgagtgacttcattgagaattgggtcaaaatctgtgcgccagcaaagaccaaggttaaatcagcatgcggtgacttaacttttgcagagcagtgcaccagcttggagaaggaggctgtgaatgtgtcacttgcgaacttattgacttacccgtttgttagagaggccgtggtcaacaataagctggctctgaagggtggatactatgattttgtcaacgcagccccgcgcctcctcctctccagccccacccgccttgcagcagcccctgtagagaagccccacaaccagccagaccaacacaccatgtcgagcgctccccagcctcacccagatgccctccgcactactgcccccacatcagcagccctccacactactgcccccacatcagcagccccgcgtgatcccagtgaccgcaccgcggcacaactcattttaggagtgagtctggaacgtggtataactgctctggcagcggggacgggggctccttctcacatttttggcttttatgggcctttcaaaccaactctgaccgttggatgtagggtgaccaacatatcaatggttgttattgtagtctctgttgtgattgtgctctaccaaccttctggctggtcaatgtgttcagtcttggtgcatatggtagccatgggttctctgcagctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010033 GO:0010037 GO:0010119 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071944 GO:0072347 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

386

Amino Acids

41.09

Weight (kDa)

6.55

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23730 AT1G23730 AT1G70410 AT1G70410 AT1G70410
fragaria_vesca	FvH4_4g30530 FvH4_4g34390 FvH4_4g34390
malus_domestica	MD13G1092500.v1.1 MD16G1093300.v1.1
prunus_persica	Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1
pyrus_communis	pycom13g08030 pycom16g07930
rosa_chinensis	RchiOBHm_Chr4g0443811
rosa_laevigata	RLG00000005886
rosa_multiflora	Rmu_sc0005632.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384380
rosa_rugosa	Rorug04G0347600 Rorug04G0347600 Rorug04G0347600 Rorug04G0347600
rosa_samantha	Rh4AG407700 Rh4BG418700 Rh4CG432800
rosa_wichuraiana	Rw4G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	488, 715, 889, 911
AclWI	GGATC	3 cut(s)	89, 460, 887
AcoI	YGGCCR	2 cut(s)	205, 375
AcuI	CTGAAG	1 cut(s)	698
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	203
AfeI	AGCGCT	1 cut(s)	802
AfiI	CCNNNNNNNGG	4 cut(s)	78, 298, 476, 910
AgsI	TTSAA	3 cut(s)	169, 383, 1012
AjnI	CCWGG	2 cut(s)	77, 295
AluBI	AGCT	8 cut(s)	37, 53, 145, 211, 435, 588, 670, 1156
AluI	AGCT	8 cut(s)	37, 53, 145, 211, 435, 588, 670, 1156
Alw21I	GWGCWC	2 cut(s)	584, 1089
Alw26I	GTCTC	1 cut(s)	1075
Alw44I	GTGCAC	1 cut(s)	580
AlwI	GGATC	3 cut(s)	89, 460, 887
AlwNI	CAGNNNCTG	2 cut(s)	438, 755
Ama87I	CYCGRG	2 cut(s)	261, 361
Aor51HI	AGCGCT	1 cut(s)	802
AoxI	GGCC	5 cut(s)	205, 220, 375, 651, 1004
ApaLI	GTGCAC	1 cut(s)	580
ApeKI	GCWGC	7 cut(s)	707, 746, 749, 851, 881, 962, 1153
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
AspLEI	GCGC	3 cut(s)	526, 717, 803
AspS9I	GGNCC	4 cut(s)	313, 334, 480, 1004
AsuC2I	CCSGG	2 cut(s)	134, 470
AsuHPI	GGTGA	4 cut(s)	433, 569, 806, 1051
AsuII	TTCGAA	1 cut(s)	32
AvaI	CYCGRG	2 cut(s)	261, 361
AvaII	GGWCC	3 cut(s)	313, 334, 480
BaeGI	GKGCMC	2 cut(s)	432, 584
BanII	GRGCYC	2 cut(s)	459, 979
BarI	GAAGNNNNNNTAC	2 cut(s)	671, 703
Bbv12I	GWGCWC	2 cut(s)	584, 1089
BbvI	GCAGC	6 cut(s)	719, 758, 761, 863, 893, 974
BccI	CCATC	2 cut(s)	116, 470
BceAI	ACGGC	2 cut(s)	220, 638
BciT130I	CCWGG	2 cut(s)	79, 297
BciVI	GTATCC	1 cut(s)	680
BcnI	CCSGG	2 cut(s)	134, 470
BcoDI	GTCTC	1 cut(s)	1075
BfmI	CTRYAG	3 cut(s)	756, 1151, 1157
BfoI	RGCGCY	1 cut(s)	804
BfuI	GTATCC	1 cut(s)	680
Bme1390I	CCNGG	4 cut(s)	79, 134, 297, 470
Bme18I	GGWCC	3 cut(s)	313, 334, 480
BmeT110I	CYCGRG	2 cut(s)	261, 361
BmgT120I	GGNCC	4 cut(s)	313, 334, 480, 1004
BmiI	GGNNCC	3 cut(s)	336, 481, 978
BmrFI	CCNGG	4 cut(s)	79, 134, 297, 470
BmrI	ACTGGG	1 cut(s)	891
BmsI	GCATC	3 cut(s)	4, 406, 811
BmuI	ACTGGG	1 cut(s)	891
BpmI	CTGGAG	1 cut(s)	712
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	386
BpuMI	CCSGG	2 cut(s)	134, 470
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	5 cut(s)	296, 537, 654, 909, 1140
BsaXI	ACNNNNNCTCC	2 cut(s)	961, 991
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 298, 476, 910
Bse1I	ACTGG	1 cut(s)	897
Bse3DI	GCAATG	2 cut(s)	18, 321
BseBI	CCWGG	2 cut(s)	79, 297
BseDI	CCNNGG	5 cut(s)	296, 537, 654, 909, 1140
BseGI	GGATG	4 cut(s)	19, 127, 279, 1037
BseLI	CCNNNNNNNGG	4 cut(s)	78, 298, 476, 910
BseMI	GCAATG	2 cut(s)	18, 321
BseMII	CTCAG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	897
BseRI	GAGGAG	2 cut(s)	710, 713
BseSI	GKGCMC	2 cut(s)	432, 584
BseXI	GCAGC	6 cut(s)	719, 758, 761, 863, 893, 974
BseYI	CCCAGC	2 cut(s)	113, 807
Bsh1236I	CGCG	4 cut(s)	488, 715, 889, 911
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	5 cut(s)	207, 222, 377, 653, 1006
BsiEI	CGRYCG	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	584, 1089
BsiHKCI	CYCGRG	2 cut(s)	261, 361
BsiSI	CCGG	3 cut(s)	24, 134, 470
BslFI	GGGAC	3 cut(s)	320, 493, 982
BslI	CCNNNNNNNGG	4 cut(s)	78, 298, 476, 910
BsmAI	GTCTC	1 cut(s)	1075
BsmFI	GGGAC	3 cut(s)	320, 493, 982
BsnI	GGCC	5 cut(s)	207, 222, 377, 653, 1006
BsoBI	CYCGRG	2 cut(s)	261, 361
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	5 cut(s)	432, 459, 584, 979, 1089
Bsp143I	GATC	4 cut(s)	81, 423, 465, 892
Bsp19I	CCATGG	1 cut(s)	1140
BspANI	GGCC	5 cut(s)	207, 222, 377, 653, 1006
BspCNI	CTCAG	1 cut(s)	54
BspFNI	CGCG	4 cut(s)	488, 715, 889, 911
BspLI	GGNNCC	3 cut(s)	336, 481, 978
BspMAI	CTGCAG	1 cut(s)	1155
BspPI	GGATC	3 cut(s)	89, 460, 887
BspT104I	TTCGAA	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	18, 321
BsrI	ACTGG	1 cut(s)	897
BssECI	CCNNGG	5 cut(s)	296, 537, 654, 909, 1140
BssMI	GATC	4 cut(s)	81, 423, 465, 892
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	2 cut(s)	537, 1140
Bst2UI	CCWGG	2 cut(s)	79, 297
Bst4CI	ACNGT	1 cut(s)	1027
BstACI	GRCGYC	1 cut(s)	66
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	6 cut(s)	209, 213, 250, 528, 553, 672
BstDEI	CTNAG	1 cut(s)	41
BstDSI	CCRYGG	3 cut(s)	654, 909, 1140
BstEII	GGTNACC	1 cut(s)	1039
BstF5I	GGATG	4 cut(s)	19, 127, 279, 1037
BstFNI	CGCG	4 cut(s)	488, 715, 889, 911
BstH2I	RGCGCY	1 cut(s)	804
BstHHI	GCGC	3 cut(s)	526, 717, 803
BstKTI	GATC	4 cut(s)	84, 426, 468, 895
BstMAI	GTCTC	1 cut(s)	1075
BstMBI	GATC	4 cut(s)	81, 423, 465, 892
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	3 cut(s)	441, 738, 962
BstNI	CCWGG	2 cut(s)	79, 297
BstNSI	RCATGY	2 cut(s)	252, 555
BstPI	GGTNACC	1 cut(s)	1039
BstSCI	CCNGG	4 cut(s)	77, 132, 295, 468
BstSFI	CTRYAG	3 cut(s)	756, 1151, 1157
BstSLI	GKGCMC	2 cut(s)	432, 584
BstUI	CGCG	4 cut(s)	488, 715, 889, 911
BstV1I	GCAGC	6 cut(s)	719, 758, 761, 863, 893, 974
BstXI	CCANNNNNNTGG	2 cut(s)	238, 1100
BsuI	GTATCC	1 cut(s)	680
BsuRI	GGCC	5 cut(s)	207, 222, 377, 653, 1006
BtgI	CCRYGG	3 cut(s)	654, 909, 1140
BtsCI	GGATG	4 cut(s)	19, 127, 279, 1037
BtsI	GCAGTG	1 cut(s)	584
BtsIMutI	CAGTG	3 cut(s)	49, 584, 904
Cac8I	GCNNGC	6 cut(s)	209, 213, 250, 528, 553, 672
CaiI	CAGNNNCTG	2 cut(s)	438, 755
CfoI	GCGC	3 cut(s)	526, 717, 803
Cfr13I	GGNCC	4 cut(s)	313, 334, 480, 1004
Cfr42I	CCGCGG	1 cut(s)	912
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	202
CspCI	CAANNNNNGTGG	2 cut(s)	724, 759
CviAII	CATG	6 cut(s)	249, 310, 460, 552, 793, 1141
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	4 cut(s)	83, 425, 467, 894
DpnII	GATC	4 cut(s)	81, 423, 465, 892
EaeI	YGGCCR	2 cut(s)	205, 375
Eco130I	CCWWGG	2 cut(s)	537, 1140
Eco24I	GRGCYC	2 cut(s)	459, 979
Eco47I	GGWCC	3 cut(s)	313, 334, 480
Eco47III	AGCGCT	1 cut(s)	802
Eco57I	CTGAAG	1 cut(s)	698
Eco88I	CYCGRG	2 cut(s)	261, 361
Eco91I	GGTNACC	1 cut(s)	1039
EcoO65I	GGTNACC	1 cut(s)	1039
EcoRII	CCWGG	2 cut(s)	77, 295
EcoT14I	CCWWGG	2 cut(s)	537, 1140
EcoT38I	GRGCYC	2 cut(s)	459, 979
ErhI	CCWWGG	2 cut(s)	537, 1140
FaeI	CATG	6 cut(s)	252, 313, 463, 555, 796, 1144
FaqI	GGGAC	3 cut(s)	320, 493, 982
FatI	CATG	6 cut(s)	248, 309, 459, 551, 792, 1140
FauI	CCCGC	5 cut(s)	146, 720, 746, 894, 958
FauNDI	CATATG	1 cut(s)	1131
FokI	GGATG	4 cut(s)	26, 134, 266, 1044
FriOI	GRGCYC	2 cut(s)	459, 979
GlaI	GCGC	3 cut(s)	525, 716, 802
GsaI	CCCAGC	2 cut(s)	117, 811
GsuI	CTGGAG	1 cut(s)	712
HaeII	RGCGCY	1 cut(s)	804
HaeIII	GGCC	5 cut(s)	207, 222, 377, 653, 1006
HapII	CCGG	3 cut(s)	24, 134, 470
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	3 cut(s)	526, 717, 803
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	6 cut(s)	252, 313, 463, 555, 796, 1144
Hin6I	GCGC	3 cut(s)	524, 715, 801
HinP1I	GCGC	3 cut(s)	524, 715, 801
HincII	GTYRAC	2 cut(s)	661, 703
HindII	GTYRAC	2 cut(s)	661, 703
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	2 cut(s)	257, 934
HpaII	CCGG	3 cut(s)	24, 134, 470
HphI	GGTGA	4 cut(s)	433, 569, 806, 1051
Hpy166II	GTNNAC	5 cut(s)	163, 196, 582, 661, 703
Hpy188I	TCNGA	5 cut(s)	121, 256, 317, 678, 1023
Hpy188III	TCNNGA	5 cut(s)	139, 169, 261, 363, 938
Hpy8I	GTNNAC	5 cut(s)	163, 196, 582, 661, 703
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	5 cut(s)	56, 589, 673, 990, 1107
HpyCH4III	ACNGT	1 cut(s)	1027
HpyCH4IV	ACGT	1 cut(s)	943
HpyCH4V	TGCA	7 cut(s)	248, 397, 572, 582, 746, 1129, 1153
HpyF10VI	GCNNNNNNNGC	3 cut(s)	441, 738, 962
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	943
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	6 cut(s)	252, 313, 463, 555, 796, 1144
HspAI	GCGC	3 cut(s)	524, 715, 801
KspI	CCGCGG	1 cut(s)	912
Kzo9I	GATC	4 cut(s)	81, 423, 465, 892
LmnI	GCTCC	3 cut(s)	440, 808, 982
Lsp1109I	GCAGC	6 cut(s)	719, 758, 761, 863, 893, 974
LweI	GCATC	3 cut(s)	4, 406, 811
MaeII	ACGT	1 cut(s)	943
MaeIII	GTNAC	6 cut(s)	44, 491, 557, 612, 899, 1039
MalI	GATC	4 cut(s)	83, 425, 467, 894
MboI	GATC	4 cut(s)	81, 423, 465, 892
MhlI	GDGCHC	5 cut(s)	432, 459, 584, 979, 1089
MluCI	AATT	2 cut(s)	286, 505
MlyI	GAGTC	1 cut(s)	943
MmeI	TCCRAC	4 cut(s)	84, 99, 316, 1009
MseI	TTAA	2 cut(s)	543, 563
MslI	CAYNNNNRTG	2 cut(s)	819, 1052
MspA1I	CMGCKG	2 cut(s)	911, 965
MspI	CCGG	3 cut(s)	24, 134, 470
MspR9I	CCNGG	4 cut(s)	79, 134, 297, 470
MvaI	CCWGG	2 cut(s)	79, 297
MvnI	CGCG	4 cut(s)	488, 715, 889, 911
MwoI	GCNNNNNNNGC	3 cut(s)	441, 738, 962
NciI	CCSGG	2 cut(s)	134, 470
NcoI	CCATGG	1 cut(s)	1140
NdeI	CATATG	1 cut(s)	1131
NdeII	GATC	4 cut(s)	81, 423, 465, 892
NlaIII	CATG	6 cut(s)	252, 313, 463, 555, 796, 1144
NlaIV	GGNNCC	3 cut(s)	336, 481, 978
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	6 cut(s)	44, 491, 557, 612, 899, 1039
NspI	RCATGY	2 cut(s)	252, 555
NspV	TTCGAA	1 cut(s)	32
PaeI	GCATGC	2 cut(s)	252, 555
PaeR7I	CTCGAG	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	257
PflFI	GACNNNGTC	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	468
PleI	GAGTC	1 cut(s)	942
PpsI	GAGTC	1 cut(s)	942
Psp6I	CCWGG	2 cut(s)	77, 295
PspEI	GGTNACC	1 cut(s)	1039
PspFI	CCCAGC	2 cut(s)	113, 807
PspGI	CCWGG	2 cut(s)	77, 295
PspN4I	GGNNCC	3 cut(s)	336, 481, 978
PspPI	GGNCC	4 cut(s)	313, 334, 480, 1004
PstI	CTGCAG	1 cut(s)	1155
PstNI	CAGNNNCTG	2 cut(s)	438, 755
PsyI	GACNNNGTC	1 cut(s)	134
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	2 cut(s)	819, 1052
SacII	CCGCGG	1 cut(s)	912
SaqAI	TTAA	2 cut(s)	543, 563
Sau3AI	GATC	4 cut(s)	81, 423, 465, 892
Sau96I	GGNCC	4 cut(s)	313, 334, 480, 1004
SchI	GAGTC	1 cut(s)	943
ScrFI	CCNGG	4 cut(s)	79, 134, 297, 470
SduI	GDGCHC	5 cut(s)	432, 459, 584, 979, 1089
SfaNI	GCATC	3 cut(s)	4, 406, 811
SfcI	CTRYAG	3 cut(s)	756, 1151, 1157
Sfr274I	CTCGAG	1 cut(s)	261
Sfr303I	CCGCGG	1 cut(s)	912
SfuI	TTCGAA	1 cut(s)	32
SgrBI	CCGCGG	1 cut(s)	912
SinI	GGWCC	3 cut(s)	313, 334, 480
SlaI	CTCGAG	1 cut(s)	261
SmiMI	CAYNNNNRTG	2 cut(s)	819, 1052
SmlI	CTYRAG	2 cut(s)	261, 401
SmoI	CTYRAG	2 cut(s)	261, 401
SphI	GCATGC	2 cut(s)	252, 555
Sse9I	AATT	2 cut(s)	286, 505
SspI	AATATT	1 cut(s)	415
StyD4I	CCNGG	4 cut(s)	77, 132, 295, 468
StyI	CCWWGG	2 cut(s)	537, 1140
TaaI	ACNGT	1 cut(s)	1027
TaiI	ACGT	1 cut(s)	946
TaqI	TCGA	7 cut(s)	32, 60, 138, 262, 345, 464, 797
TasI	AATT	2 cut(s)	286, 505
TauI	GCSGC	5 cut(s)	74, 77, 377, 444, 914
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	2 cut(s)	543, 563
Tru9I	TTAA	2 cut(s)	543, 563
TscAI	CASTG	3 cut(s)	49, 584, 904
TseFI	GTSAC	6 cut(s)	44, 491, 557, 612, 899, 1039
TseI	GCWGC	7 cut(s)	707, 746, 749, 851, 881, 962, 1153
Tsp45I	GTSAC	6 cut(s)	44, 491, 557, 612, 899, 1039
TspDTI	ATGAA	2 cut(s)	298, 487
TspGWI	ACGGA	2 cut(s)	188, 330
TspRI	CASTG	3 cut(s)	49, 584, 904
Tth111I	GACNNNGTC	1 cut(s)	134
VneI	GTGCAC	1 cut(s)	580
VpaK11BI	GGWCC	3 cut(s)	313, 334, 480
XceI	RCATGY	2 cut(s)	252, 555
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1051
XhoI	CTCGAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.