Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005578

Physical Location & Seq

Genomic Coordinates Forward (+)

32207284 .. 32212056

Gene Structure 4773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTTACGAGGATGCCATTGCCGGACTTTCGAAGCTGCTGAGTGAAAAAGCTGACCTCGAAGGTGTCGCCGCCGCCAAGATCAAGCAGTTAACGGCCGAGCTGGAGGAGGCCGGGTCAAATCAGTTTGACCCGGTCGAGAAGCTCAAAAGTGGGTTCGTCCACTTCAGGACGGAGAAGTTCGAGAAAGATGTTGATCTATACGGCAAACTCGCCACTGGCCAAAGCCCCAAGTTTATGGTATTTGCATGCTCAGATTCTCGAGTGTGTCCCTCACACATCCTCAATTTCCAACCCGGGGAGGCTTTCGTGGTCCGAAACATCGCCAACATGGTCCCTCCATTCGACACGACTAAACACTCGGGAGTGGGGGCTGCCATTGAATACGCAGTATTGCATCTCAAGGTGGAGAATATTGTGGTGATCGGACATAGCTGCTGCGGCGGTATAAAGGGGCTCATGTCGATCCCGGACGATGGGACCACCGCTAGTGACTTCATTGAGAATTGGGTCCAAATCTGTGCACCAGCTAAGAATAAGATCAAGTCATCCTGCGGTGACTTGAGTTTTGCAGACCAGTGCACCAGCTTGGAGAAGGAGGCTGTGAATGTATCACTAGGGAACTTACTGACATACCCGTTTGTTAGAGAGGCTGTGGTGAACAATACTCTGGCTCTCAAGGGTGGACACTATGACTTTGTCGGTGGCGGTTTCGAGCTCTGGGATCTTGATTTCAACATCACACCCAATTTGACACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010033 GO:0010037 GO:0010119 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071944 GO:0072347 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

254

Amino Acids

27.35

Weight (kDa)

5.07

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	80 - 236	1.3e-43	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23730 AT1G23730 AT1G70410 AT1G70410 AT1G70410
fragaria_vesca	FvH4_4g30530 FvH4_4g34390 FvH4_4g34390
malus_domestica	MD13G1092500.v1.1 MD16G1093300.v1.1
prunus_persica	Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1
pyrus_communis	pycom13g08030 pycom16g07930
rosa_chinensis	RchiOBHm_Chr4g0443811
rosa_laevigata	RLG00000005886
rosa_multiflora	Rmu_sc0005632.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384380
rosa_rugosa	Rorug04G0347600 Rorug04G0347600 Rorug04G0347600 Rorug04G0347600
rosa_samantha	Rh4AG407700 Rh4BG418700 Rh4CG432800
rosa_wichuraiana	Rw4G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	72, 75, 441, 444, 486, 555, 708
AclWI	GGATC	2 cut(s)	460, 732
AcoI	YGGCCR	2 cut(s)	96, 220
AcuI	CTGAAG	1 cut(s)	151
AfiI	CCNNNNNNNGG	2 cut(s)	298, 476
AgsI	TTSAA	2 cut(s)	383, 736
AluBI	AGCT	8 cut(s)	37, 53, 103, 145, 435, 530, 588, 718
AluI	AGCT	8 cut(s)	37, 53, 103, 145, 435, 530, 588, 718
Alw21I	GWGCWC	3 cut(s)	526, 584, 720
Alw44I	GTGCAC	2 cut(s)	522, 580
AlwI	GGATC	2 cut(s)	460, 732
Ama87I	CYCGRG	3 cut(s)	261, 296, 361
AoxI	GGCC	3 cut(s)	96, 111, 220
ApaLI	GTGCAC	2 cut(s)	522, 580
ApeKI	GCWGC	4 cut(s)	37, 374, 435, 438
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
AspS9I	GGNCC	4 cut(s)	313, 334, 480, 511
AsuC2I	CCSGG	5 cut(s)	115, 134, 297, 298, 470
AsuHPI	GGTGA	3 cut(s)	433, 569, 670
AsuII	TTCGAA	1 cut(s)	32
AvaI	CYCGRG	3 cut(s)	261, 296, 361
AvaII	GGWCC	4 cut(s)	313, 334, 480, 511
BaeGI	GKGCMC	2 cut(s)	526, 584
BalI	TGGCCA	1 cut(s)	222
BanII	GRGCYC	2 cut(s)	459, 720
Bbv12I	GWGCWC	3 cut(s)	526, 584, 720
BbvI	GCAGC	4 cut(s)	24, 361, 422, 425
BccI	CCATC	1 cut(s)	470
BceAI	ACGGC	2 cut(s)	111, 220
BcnI	CCSGG	5 cut(s)	115, 134, 297, 298, 470
BfaI	CTAG	2 cut(s)	489, 617
BisI	GCNGC	7 cut(s)	38, 72, 75, 375, 436, 439, 442
BlsI	GCNGC	7 cut(s)	39, 73, 76, 376, 437, 440, 443
Bme1390I	CCNGG	5 cut(s)	115, 134, 297, 298, 470
Bme18I	GGWCC	4 cut(s)	313, 334, 480, 511
BmeT110I	CYCGRG	3 cut(s)	261, 296, 361
BmgT120I	GGNCC	4 cut(s)	313, 334, 480, 511
BmiI	GGNNCC	3 cut(s)	336, 481, 512
BmrFI	CCNGG	5 cut(s)	115, 134, 297, 298, 470
BmsI	GCATC	2 cut(s)	4, 406
BpmI	CTGGAG	1 cut(s)	125
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	3 cut(s)	386, 583, 662
BpuMI	CCSGG	5 cut(s)	115, 134, 297, 298, 470
BsaBI	GATNNNNATC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	296, 297
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 476
Bse1I	ACTGG	2 cut(s)	223, 577
Bse3DI	GCAATG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	195
BseDI	CCNNGG	2 cut(s)	296, 297
BseGI	GGATG	3 cut(s)	19, 279, 548
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	2 cut(s)	298, 476
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	32, 267
BseNI	ACTGG	2 cut(s)	223, 577
BseRI	GAGGAG	1 cut(s)	122
BseSI	GKGCMC	2 cut(s)	526, 584
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	4 cut(s)	24, 361, 422, 425
Bsh1285I	CGRYCG	2 cut(s)	99, 138
BshFI	GGCC	3 cut(s)	98, 113, 222
BsiEI	CGRYCG	2 cut(s)	99, 138
BsiHKAI	GWGCWC	3 cut(s)	526, 584, 720
BsiHKCI	CYCGRG	3 cut(s)	261, 296, 361
BsiSI	CCGG	5 cut(s)	24, 114, 134, 297, 470
BslFI	GGGAC	3 cut(s)	255, 320, 493
BslI	CCNNNNNNNGG	2 cut(s)	298, 476
BsmFI	GGGAC	3 cut(s)	255, 320, 493
BsnI	GGCC	3 cut(s)	98, 113, 222
BsoBI	CYCGRG	3 cut(s)	261, 296, 361
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	4 cut(s)	459, 526, 584, 720
Bsp143I	GATC	6 cut(s)	81, 196, 423, 465, 540, 724
BspACI	CCGC	7 cut(s)	72, 75, 441, 444, 486, 555, 708
BspANI	GGCC	3 cut(s)	98, 113, 222
BspCNI	CTCAG	2 cut(s)	33, 266
BspLI	GGNNCC	3 cut(s)	336, 481, 512
BspPI	GGATC	2 cut(s)	460, 732
BspT104I	TTCGAA	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	2 cut(s)	223, 577
BssECI	CCNNGG	2 cut(s)	296, 297
BssMI	GATC	6 cut(s)	81, 196, 423, 465, 540, 724
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	3 cut(s)	41, 253, 531
BstF5I	GGATG	3 cut(s)	19, 279, 548
BstKTI	GATC	6 cut(s)	84, 199, 426, 468, 543, 727
BstMBI	GATC	6 cut(s)	81, 196, 423, 465, 540, 724
BstMCI	CGRYCG	2 cut(s)	99, 138
BstMWI	GCNNNNNNNGC	1 cut(s)	441
BstNSI	RCATGY	1 cut(s)	252
BstSCI	CCNGG	5 cut(s)	113, 132, 295, 296, 468
BstSLI	GKGCMC	2 cut(s)	526, 584
BstV1I	GCAGC	4 cut(s)	24, 361, 422, 425
BstX2I	RGATCY	1 cut(s)	724
BstXI	CCANNNNNNTGG	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	724
BstZI	CGGCCG	1 cut(s)	96
BsuRI	GGCC	3 cut(s)	98, 113, 222
BtgZI	GCGATG	1 cut(s)	307
BtsCI	GGATG	3 cut(s)	19, 279, 548
BtsIMutI	CAGTG	2 cut(s)	216, 584
Cac8I	GCNNGC	1 cut(s)	250
Cfr13I	GGNCC	4 cut(s)	313, 334, 480, 511
Cfr9I	CCCGGG	1 cut(s)	296
CviAII	CATG	3 cut(s)	249, 331, 460
DdeI	CTNAG	3 cut(s)	41, 253, 531
DpnI	GATC	6 cut(s)	83, 198, 425, 467, 542, 726
DpnII	GATC	6 cut(s)	81, 196, 423, 465, 540, 724
EaeI	YGGCCR	2 cut(s)	96, 220
EagI	CGGCCG	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	718
EclXI	CGGCCG	1 cut(s)	96
Eco24I	GRGCYC	2 cut(s)	459, 720
Eco47I	GGWCC	4 cut(s)	313, 334, 480, 511
Eco52I	CGGCCG	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	718
Eco57I	CTGAAG	1 cut(s)	151
Eco88I	CYCGRG	3 cut(s)	261, 296, 361
EcoICRI	GAGCTC	1 cut(s)	718
EcoT38I	GRGCYC	2 cut(s)	459, 720
FaeI	CATG	3 cut(s)	252, 334, 463
FaqI	GGGAC	3 cut(s)	255, 320, 493
FatI	CATG	3 cut(s)	248, 330, 459
Fnu4HI	GCNGC	7 cut(s)	38, 72, 75, 375, 436, 439, 442
FokI	GGATG	3 cut(s)	26, 266, 535
FriOI	GRGCYC	2 cut(s)	459, 720
Fsp4HI	GCNGC	7 cut(s)	38, 72, 75, 375, 436, 439, 442
FspBI	CTAG	2 cut(s)	489, 617
GluI	GCNGC	7 cut(s)	38, 72, 75, 375, 436, 439, 442
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	3 cut(s)	98, 113, 222
HapII	CCGG	5 cut(s)	24, 114, 134, 297, 470
Hin1II	CATG	3 cut(s)	252, 334, 463
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HinfI	GANTC	1 cut(s)	257
HpaI	GTTAAC	1 cut(s)	93
HpaII	CCGG	5 cut(s)	24, 114, 134, 297, 470
HphI	GGTGA	3 cut(s)	433, 569, 670
Hpy166II	GTNNAC	6 cut(s)	93, 163, 524, 582, 661, 686
Hpy188I	TCNGA	3 cut(s)	256, 317, 428
Hpy188III	TCNNGA	6 cut(s)	139, 169, 184, 261, 363, 728
Hpy8I	GTNNAC	6 cut(s)	93, 163, 524, 582, 661, 686
HpyAV	CCTTC	2 cut(s)	56, 589
HpyCH4V	TGCA	5 cut(s)	248, 397, 524, 572, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	441
HpyF3I	CTNAG	3 cut(s)	41, 253, 531
Hsp92II	CATG	3 cut(s)	252, 334, 463
KspAI	GTTAAC	1 cut(s)	93
Kzo9I	GATC	6 cut(s)	81, 196, 423, 465, 540, 724
Lsp1109I	GCAGC	4 cut(s)	24, 361, 422, 425
LweI	GCATC	2 cut(s)	4, 406
MaeI	CTAG	2 cut(s)	489, 617
MaeIII	GTNAC	2 cut(s)	491, 557
MalI	GATC	6 cut(s)	83, 198, 425, 467, 542, 726
MboI	GATC	6 cut(s)	81, 196, 423, 465, 540, 724
MflI	RGATCY	1 cut(s)	724
MhlI	GDGCHC	4 cut(s)	459, 526, 584, 720
MlsI	TGGCCA	1 cut(s)	222
MluCI	AATT	3 cut(s)	286, 505, 748
MluNI	TGGCCA	1 cut(s)	222
MmeI	TCCRAC	1 cut(s)	316
Mox20I	TGGCCA	1 cut(s)	222
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	222
MspI	CCGG	5 cut(s)	24, 114, 134, 297, 470
MspR9I	CCNGG	5 cut(s)	115, 134, 297, 298, 470
MwoI	GCNNNNNNNGC	1 cut(s)	441
NciI	CCSGG	5 cut(s)	115, 134, 297, 298, 470
NdeII	GATC	6 cut(s)	81, 196, 423, 465, 540, 724
NlaIII	CATG	3 cut(s)	252, 334, 463
NlaIV	GGNNCC	3 cut(s)	336, 481, 512
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	2 cut(s)	491, 557
NspI	RCATGY	1 cut(s)	252
NspV	TTCGAA	1 cut(s)	32
PaeI	GCATGC	1 cut(s)	252
PaeR7I	CTCGAG	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	257
PflFI	GACNNNGTC	2 cut(s)	134, 698
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	7 cut(s)	39, 73, 76, 376, 437, 440, 443
Psp124BI	GAGCTC	1 cut(s)	720
PspN4I	GGNNCC	3 cut(s)	336, 481, 512
PspPI	GGNCC	4 cut(s)	313, 334, 480, 511
PsuI	RGATCY	1 cut(s)	724
PsyI	GACNNNGTC	2 cut(s)	134, 698
SacI	GAGCTC	1 cut(s)	720
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	7 cut(s)	38, 72, 75, 375, 436, 439, 442
Sau3AI	GATC	6 cut(s)	81, 196, 423, 465, 540, 724
Sau96I	GGNCC	4 cut(s)	313, 334, 480, 511
ScrFI	CCNGG	5 cut(s)	115, 134, 297, 298, 470
SduI	GDGCHC	4 cut(s)	459, 526, 584, 720
SfaNI	GCATC	2 cut(s)	4, 406
Sfr274I	CTCGAG	1 cut(s)	261
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	4 cut(s)	313, 334, 480, 511
SlaI	CTCGAG	1 cut(s)	261
SmaI	CCCGGG	1 cut(s)	298
SmlI	CTYRAG	4 cut(s)	261, 401, 562, 677
SmoI	CTYRAG	4 cut(s)	261, 401, 562, 677
SphI	GCATGC	1 cut(s)	252
Sse9I	AATT	3 cut(s)	286, 505, 748
SsiI	CCGC	7 cut(s)	72, 75, 441, 444, 486, 555, 708
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	2 cut(s)	489, 617
SstI	GAGCTC	1 cut(s)	720
StyD4I	CCNGG	5 cut(s)	113, 132, 295, 296, 468
TaqI	TCGA	8 cut(s)	32, 60, 138, 183, 262, 345, 464, 714
TasI	AATT	3 cut(s)	286, 505, 748
TauI	GCSGC	3 cut(s)	74, 77, 444
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	2 cut(s)	223, 584
TseFI	GTSAC	2 cut(s)	491, 557
TseI	GCWGC	4 cut(s)	37, 374, 435, 438
Tsp45I	GTSAC	2 cut(s)	491, 557
TspDTI	ATGAA	1 cut(s)	487
TspGWI	ACGGA	1 cut(s)	188
TspMI	CCCGGG	1 cut(s)	296
TspRI	CASTG	2 cut(s)	223, 584
Tth111I	GACNNNGTC	2 cut(s)	134, 698
VneI	GTGCAC	2 cut(s)	522, 580
VpaK11BI	GGWCC	4 cut(s)	313, 334, 480, 511
XceI	RCATGY	1 cut(s)	252
XhoI	CTCGAG	1 cut(s)	261
XmaI	CCCGGG	1 cut(s)	296
XspI	CTAG	2 cut(s)	489, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.