Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005578

Physical Location & Seq

Genomic Coordinates Forward (+)

26416365 .. 26422680

Gene Structure 6316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G253300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCGTGCTTGTTCTGTTGTACAACAGCAAAGGTCACGAAGGAAGACATGGCTAAGGACTCGTACGAGGATGCCATTGCCGGACTTTCGAAGCTCCTGAGTGAGAATGCCGACCTCGAAGGCGTCGCCGCAGCAAAGATCAAGCAGATAACGGCCGAGTTGGAGTCGGGCGGGCTGGACCCGGTCGAGAAGATCAGAACCGGTTTCCTCCATTTCAAGAAGGAGAAATTTGAGAAAGATGCTGATTTATACGACAAGCTTGCGACAGGGCAAAGCCCCAAGTTCATGGTTTTTGCATGCTCAGACTCCCGAGTTTGCCCCTCGCACATCCTCAATTTTCAACCGGGGGAGGCCTTTGTGGTCAGAAACATCGCTAACATGGTCCCTCCATTTGACCCGAAAAAATACGCGGGAGTGGGGGCAGCCATTGAATATGCGGTATTGCATCTGAAGGTGGAGAATATTATTGTCATTGGACACAGCTGCTGTGGTGGGATCAAAGGGCTCATGTCAATCCCGGATGATGGGACCACTGCTAGTGACTTCATAGAGGACTGGGTGAAAATCTGTTCGCCGGCTAAGAACAAGATCAAAACAGCATACAGTGGTTTAACTTTCAAAGAGCAGTGCACCAACTTGGAGAAGGAAGCTGTGAATGTGTCACTGGGAAACCTACTGACATATCCATTTGTGAGAGAAGGGGTGGTGAACAAGACACTAAGCCTGAACGGCGGATACTACGATTTCGTCAACGGTAGCTTCCAGCTTTGGGATCTTGACTTCAAAATTACACCCCATTTGTCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010033 GO:0010037 GO:0010119 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071944 GO:0072347 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

270

Amino Acids

29.41

Weight (kDa)

5.61

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23730 AT1G23730 AT1G70410 AT1G70410 AT1G70410
fragaria_vesca	FvH4_4g30530 FvH4_4g34390 FvH4_4g34390
malus_domestica	MD13G1092500.v1.1 MD16G1093300.v1.1
prunus_persica	Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1
pyrus_communis	pycom13g08030 pycom16g07930
rosa_chinensis	RchiOBHm_Chr4g0443811
rosa_laevigata	RLG00000005886
rosa_multiflora	Rmu_sc0005632.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384380
rosa_rugosa	Rorug04G0347600 Rorug04G0347600 Rorug04G0347600 Rorug04G0347600
rosa_samantha	Rh4AG407700 Rh4BG418700 Rh4CG432800
rosa_wichuraiana	Rw4G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	410
AciI	CCGC	5 cut(s)	129, 171, 410, 437, 732
AclWI	GGATC	2 cut(s)	503, 780
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	470
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	2 cut(s)	22, 65
AfiI	CCNNNNNNNGG	2 cut(s)	524, 769
AgeI	ACCGGT	1 cut(s)	200
AgsI	TTSAA	5 cut(s)	217, 341, 431, 619, 784
AluBI	AGCT	6 cut(s)	94, 259, 483, 650, 759, 766
AluI	AGCT	6 cut(s)	94, 259, 483, 650, 759, 766
Alw21I	GWGCWC	1 cut(s)	632
Alw44I	GTGCAC	1 cut(s)	628
AlwI	GGATC	2 cut(s)	503, 780
AlwNI	CAGNNNCTG	1 cut(s)	486
Ama87I	CYCGRG	1 cut(s)	309
AoxI	GGCC	2 cut(s)	153, 351
ApaLI	GTGCAC	1 cut(s)	628
ApeKI	GCWGC	3 cut(s)	131, 422, 483
ApoI	RAATTY	1 cut(s)	227
AsiGI	ACCGGT	1 cut(s)	200
AspS9I	GGNCC	3 cut(s)	178, 382, 528
AsuC2I	CCSGG	3 cut(s)	182, 345, 518
AsuHPI	GGTGA	2 cut(s)	571, 718
AsuII	TTCGAA	1 cut(s)	89
AvaI	CYCGRG	1 cut(s)	309
AvaII	GGWCC	3 cut(s)	178, 382, 528
BaeGI	GKGCMC	1 cut(s)	632
BanII	GRGCYC	1 cut(s)	507
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	632
BbvI	GCAGC	3 cut(s)	143, 434, 470
BccI	CCATC	1 cut(s)	518
BceAI	ACGGC	2 cut(s)	168, 745
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciVI	GTATCC	1 cut(s)	728
BcnI	CCSGG	3 cut(s)	182, 345, 518
BfaI	CTAG	1 cut(s)	537
BfuI	GTATCC	1 cut(s)	728
BglI	GCCNNNNNGGC	1 cut(s)	729
BisI	GCNGC	4 cut(s)	129, 132, 423, 484
BlsI	GCNGC	4 cut(s)	130, 133, 424, 485
Bme1390I	CCNGG	3 cut(s)	182, 345, 518
Bme18I	GGWCC	3 cut(s)	178, 382, 528
BmeT110I	CYCGRG	1 cut(s)	309
BmgT120I	GGNCC	3 cut(s)	178, 382, 528
BmiI	GGNNCC	3 cut(s)	180, 384, 529
BmrFI	CCNGG	3 cut(s)	182, 345, 518
BmrI	ACTGGG	2 cut(s)	565, 674
BmsI	GCATC	3 cut(s)	61, 229, 454
BmuI	ACTGGG	2 cut(s)	565, 674
BpiI	GAAGAC	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	89
BpuMI	CCSGG	3 cut(s)	182, 345, 518
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	344
BsaWI	WCCGGW	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	2 cut(s)	524, 769
Bse118I	RCCGGY	2 cut(s)	200, 574
Bse1I	ACTGG	2 cut(s)	560, 669
Bse3DI	GCAATG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	344
BseGI	GGATG	3 cut(s)	76, 327, 526
BseLI	CCNNNNNNNGG	2 cut(s)	524, 769
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	2 cut(s)	89, 315
BseNI	ACTGG	2 cut(s)	560, 669
BseSI	GKGCMC	1 cut(s)	632
BseX3I	CGGCCG	1 cut(s)	153
BseXI	GCAGC	3 cut(s)	143, 434, 470
Bsh1236I	CGCG	1 cut(s)	410
Bsh1285I	CGRYCG	2 cut(s)	156, 186
BshFI	GGCC	2 cut(s)	155, 353
BshTI	ACCGGT	1 cut(s)	200
BsiEI	CGRYCG	2 cut(s)	156, 186
BsiHKAI	GWGCWC	1 cut(s)	632
BsiHKCI	CYCGRG	1 cut(s)	309
BsiSI	CCGG	6 cut(s)	81, 182, 201, 344, 518, 575
BsiWI	CGTACG	1 cut(s)	63
BslFI	GGGAC	2 cut(s)	368, 541
BslI	CCNNNNNNNGG	2 cut(s)	524, 769
BsmFI	GGGAC	2 cut(s)	368, 541
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	155, 353
BsoBI	CYCGRG	1 cut(s)	309
Bsp119I	TTCGAA	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	507, 632
Bsp1407I	TGTACA	1 cut(s)	20
Bsp143I	GATC	5 cut(s)	138, 192, 495, 588, 772
BspACI	CCGC	5 cut(s)	129, 171, 410, 437, 732
BspANI	GGCC	2 cut(s)	155, 353
BspCNI	CTCAG	2 cut(s)	90, 314
BspFNI	CGCG	1 cut(s)	410
BspLI	GGNNCC	3 cut(s)	180, 384, 529
BspPI	GGATC	2 cut(s)	503, 780
BspT104I	TTCGAA	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	75
BsrFI	RCCGGY	2 cut(s)	200, 574
BsrGI	TGTACA	1 cut(s)	20
BsrI	ACTGG	2 cut(s)	560, 669
BssAI	RCCGGY	2 cut(s)	200, 574
BssECI	CCNNGG	1 cut(s)	344
BssMI	GATC	5 cut(s)	138, 192, 495, 588, 772
BssNI	GRCGYC	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	605, 755
BstACI	GRCGYC	1 cut(s)	123
BstAUI	TGTACA	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	5 cut(s)	7, 173, 261, 298, 576
BstDEI	CTNAG	5 cut(s)	54, 98, 301, 579, 719
BstF5I	GGATG	3 cut(s)	76, 327, 526
BstFNI	CGCG	1 cut(s)	410
BstKTI	GATC	5 cut(s)	141, 195, 498, 591, 775
BstMBI	GATC	5 cut(s)	138, 192, 495, 588, 772
BstMCI	CGRYCG	2 cut(s)	156, 186
BstMWI	GCNNNNNNNGC	1 cut(s)	729
BstNSI	RCATGY	1 cut(s)	300
BstSCI	CCNGG	3 cut(s)	180, 343, 516
BstSLI	GKGCMC	1 cut(s)	632
BstUI	CGCG	1 cut(s)	410
BstV1I	GCAGC	3 cut(s)	143, 434, 470
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	772
BstXI	CCANNNNNNTGG	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	772
BstZI	CGGCCG	1 cut(s)	153
BsuI	GTATCC	1 cut(s)	728
BsuRI	GGCC	2 cut(s)	155, 353
BtgZI	GCGATG	1 cut(s)	355
BtsCI	GGATG	3 cut(s)	76, 327, 526
BtsI	GCAGTG	2 cut(s)	531, 632
BtsIMutI	CAGTG	4 cut(s)	531, 610, 632, 662
Cac8I	GCNNGC	5 cut(s)	7, 173, 261, 298, 576
CaiI	CAGNNNCTG	1 cut(s)	486
Cfr10I	RCCGGY	2 cut(s)	200, 574
Cfr13I	GGNCC	3 cut(s)	178, 382, 528
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	21, 64
CspAI	ACCGGT	1 cut(s)	200
CviAII	CATG	5 cut(s)	49, 286, 297, 379, 508
CviQI	GTAC	2 cut(s)	21, 64
DdeI	CTNAG	5 cut(s)	54, 98, 301, 579, 719
DpnI	GATC	5 cut(s)	140, 194, 497, 590, 774
DpnII	GATC	5 cut(s)	138, 192, 495, 588, 772
EaeI	YGGCCR	1 cut(s)	153
EagI	CGGCCG	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	747
EclXI	CGGCCG	1 cut(s)	153
Eco147I	AGGCCT	1 cut(s)	353
Eco24I	GRGCYC	1 cut(s)	507
Eco47I	GGWCC	3 cut(s)	178, 382, 528
Eco52I	CGGCCG	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	470
Eco88I	CYCGRG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	507
FaeI	CATG	5 cut(s)	52, 289, 300, 382, 511
FaqI	GGGAC	2 cut(s)	368, 541
FatI	CATG	5 cut(s)	48, 285, 296, 378, 507
FauI	CCCGC	2 cut(s)	164, 403
Fnu4HI	GCNGC	4 cut(s)	129, 132, 423, 484
FokI	GGATG	3 cut(s)	83, 314, 533
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	4 cut(s)	129, 132, 423, 484
FspBI	CTAG	1 cut(s)	537
GluI	GCNGC	4 cut(s)	129, 132, 423, 484
HaeIII	GGCC	2 cut(s)	155, 353
HapII	CCGG	6 cut(s)	81, 182, 201, 344, 518, 575
HgaI	GACGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	5 cut(s)	52, 289, 300, 382, 511
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	3 cut(s)	59, 164, 305
HpaII	CCGG	6 cut(s)	81, 182, 201, 344, 518, 575
HphI	GGTGA	2 cut(s)	571, 718
Hpy166II	GTNNAC	3 cut(s)	630, 709, 751
Hpy188I	TCNGA	5 cut(s)	197, 304, 365, 450, 809
Hpy188III	TCNNGA	6 cut(s)	37, 97, 187, 217, 309, 776
Hpy8I	GTNNAC	3 cut(s)	630, 709, 751
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	6 cut(s)	34, 113, 214, 445, 637, 692
HpyCH4III	ACNGT	2 cut(s)	605, 755
HpyCH4V	TGCA	3 cut(s)	296, 445, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	729
HpyF3I	CTNAG	5 cut(s)	54, 98, 301, 579, 719
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	5 cut(s)	52, 289, 300, 382, 511
KroI	GCCGGC	1 cut(s)	574
KroNI	GCCGGC	1 cut(s)	576
Kzo9I	GATC	5 cut(s)	138, 192, 495, 588, 772
LmnI	GCTCC	1 cut(s)	99
Lsp1109I	GCAGC	3 cut(s)	143, 434, 470
LweI	GCATC	3 cut(s)	61, 229, 454
MaeI	CTAG	1 cut(s)	537
MaeIII	GTNAC	3 cut(s)	34, 539, 660
MalI	GATC	5 cut(s)	140, 194, 497, 590, 774
MboI	GATC	5 cut(s)	138, 192, 495, 588, 772
MboII	GAAGA	2 cut(s)	56, 202
MflI	RGATCY	1 cut(s)	772
MhlI	GDGCHC	2 cut(s)	507, 632
MluCI	AATT	3 cut(s)	227, 334, 786
MlyI	GAGTC	3 cut(s)	53, 173, 299
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	8 cut(s)	61, 125, 218, 331, 341, 343, 396, 544
MroNI	GCCGGC	1 cut(s)	574
MseI	TTAA	1 cut(s)	611
MspA1I	CMGCKG	1 cut(s)	483
MspI	CCGG	6 cut(s)	81, 182, 201, 344, 518, 575
MspR9I	CCNGG	3 cut(s)	182, 345, 518
Mva1269I	GAATGC	1 cut(s)	112
MvnI	CGCG	1 cut(s)	410
MwoI	GCNNNNNNNGC	1 cut(s)	729
NaeI	GCCGGC	1 cut(s)	576
NciI	CCSGG	3 cut(s)	182, 345, 518
NdeII	GATC	5 cut(s)	138, 192, 495, 588, 772
NgoMIV	GCCGGC	1 cut(s)	574
NlaIII	CATG	5 cut(s)	52, 289, 300, 382, 511
NlaIV	GGNNCC	3 cut(s)	180, 384, 529
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	3 cut(s)	34, 539, 660
NspI	RCATGY	1 cut(s)	300
NspV	TTCGAA	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	300
PceI	AGGCCT	1 cut(s)	353
PctI	GAATGC	1 cut(s)	112
PdiI	GCCGGC	1 cut(s)	576
Pfl23II	CGTACG	1 cut(s)	63
PflFI	GACNNNGTC	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	516
PinAI	ACCGGT	1 cut(s)	200
PkrI	GCNGC	4 cut(s)	130, 133, 424, 485
PleI	GAGTC	3 cut(s)	53, 172, 299
PpsI	GAGTC	3 cut(s)	53, 172, 299
PspLI	CGTACG	1 cut(s)	63
PspN4I	GGNNCC	3 cut(s)	180, 384, 529
PspPI	GGNCC	3 cut(s)	178, 382, 528
PsrI	GAACNNNNNNTAC	2 cut(s)	719, 751
PstNI	CAGNNNCTG	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	772
PsyI	GACNNNGTC	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	483
RsaI	GTAC	2 cut(s)	22, 65
RsaNI	GTAC	2 cut(s)	21, 64
SaqAI	TTAA	1 cut(s)	611
SatI	GCNGC	4 cut(s)	129, 132, 423, 484
Sau3AI	GATC	5 cut(s)	138, 192, 495, 588, 772
Sau96I	GGNCC	3 cut(s)	178, 382, 528
SchI	GAGTC	3 cut(s)	53, 173, 299
ScrFI	CCNGG	3 cut(s)	182, 345, 518
SduI	GDGCHC	2 cut(s)	507, 632
SfaNI	GCATC	3 cut(s)	61, 229, 454
SfuI	TTCGAA	1 cut(s)	89
SinI	GGWCC	3 cut(s)	178, 382, 528
SphI	GCATGC	1 cut(s)	300
Sse9I	AATT	3 cut(s)	227, 334, 786
SseBI	AGGCCT	1 cut(s)	353
SsiI	CCGC	5 cut(s)	129, 171, 410, 437, 732
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	1 cut(s)	537
StuI	AGGCCT	1 cut(s)	353
StyD4I	CCNGG	3 cut(s)	180, 343, 516
TaaI	ACNGT	2 cut(s)	605, 755
TaqI	TCGA	3 cut(s)	89, 117, 186
TasI	AATT	3 cut(s)	227, 334, 786
TatI	WGTACW	1 cut(s)	20
TauI	GCSGC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	611
Tru9I	TTAA	1 cut(s)	611
TscAI	CASTG	4 cut(s)	538, 610, 632, 669
TseFI	GTSAC	3 cut(s)	34, 539, 660
TseI	GCWGC	3 cut(s)	131, 422, 483
Tsp45I	GTSAC	3 cut(s)	34, 539, 660
TspDTI	ATGAA	2 cut(s)	274, 535
TspRI	CASTG	4 cut(s)	538, 610, 632, 669
Tth111I	GACNNNGTC	1 cut(s)	182
VneI	GTGCAC	1 cut(s)	628
VpaK11BI	GGWCC	3 cut(s)	178, 382, 528
XapI	RAATTY	1 cut(s)	227
XceI	RCATGY	1 cut(s)	300
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.