Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005578

Physical Location & Seq

Genomic Coordinates Forward (+)

67240648 .. 67253248

Gene Structure 12601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG432800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGTATTTGCATGCTCGGATTCTCGAGTTTGCCCCTCCCACATCCTCAATTTCCAACCAGGGGAGGCTTTCATGGTCCGAAACATTGCCAATATGGTCCCTCCGTTCGACACGGTTAGCCTAATAGCTCCAAGTTTTGGTCACAATTGCGCATGGTTTACGACTAAAATGATGAAATATGCTCCTAAGTTATATAAAATGCGGAGTGGGTCTTTGTTTTCTGGTTTCATTAATTACGAAATTGACTATTGTTTGTTGCAGACAAAATACTCGGGAGTGGGGGCGGCCATTGAATACGCAGTGTTGCATCTCAAGGTGGAGAATATTGTGGTGATCGGGCACAGCTCCTGCGGCGGTATAAAGGGGCTCATGTCGATCCCGGACGATGGGACCACCGCGAGTGACTTCATTGAGAATTGGGTCAAAATCTGTGCCCCAGCAAAGACCAAGGTTAAATCAGCATGCGGTGACTTAACTTTTGCAGAGCAGTGCACCAGCTTGGAGAAGGAGGCTGTGAATGTGTCACTTGCGAACTTACTGACATACCCGTTTGTTAGAGAGGCCGTGGTCAACAATAAGCTGGCTCTGAAGGGTGGATACTATGATTTTGTCAACGGTGGTTTCCAGCTCTGGGATCTTGATTTCAATATTACACCCAATGTGATTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010033 GO:0010037 GO:0010119 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071944 GO:0072347 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

223

Amino Acids

24.51

Weight (kDa)

6.41

Isoelectric Point (pI)

51.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	1 - 39	7.3e-12	Carbonic anhydrase
Pro_CA	PF00484	88 - 206	1.4e-27	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23730 AT1G23730 AT1G70410 AT1G70410 AT1G70410
fragaria_vesca	FvH4_4g30530 FvH4_4g34390 FvH4_4g34390
malus_domestica	MD13G1092500.v1.1 MD16G1093300.v1.1
prunus_persica	Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1 Prupe.1G253300_v2.0.a1
pyrus_communis	pycom13g08030 pycom16g07930
rosa_chinensis	RchiOBHm_Chr4g0443811
rosa_laevigata	RLG00000005886
rosa_multiflora	Rmu_sc0005632.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384380
rosa_rugosa	Rorug04G0347600 Rorug04G0347600 Rorug04G0347600 Rorug04G0347600
rosa_samantha	Rh4AG407700 Rh4BG418700 Rh4CG432800
rosa_wichuraiana	Rw4G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	151
AccB7I	CCANNNNNTGG	1 cut(s)	137
AccII	CGCG	1 cut(s)	398
AciI	CCGC	6 cut(s)	202, 284, 351, 354, 396, 465
AclWI	GGATC	2 cut(s)	370, 642
AcoI	YGGCCR	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	608
AfiI	CCNNNNNNNGG	4 cut(s)	61, 137, 386, 631
AgsI	TTSAA	2 cut(s)	293, 646
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	5 cut(s)	128, 345, 498, 580, 628
AluI	AGCT	5 cut(s)	128, 345, 498, 580, 628
Alw21I	GWGCWC	1 cut(s)	494
Alw44I	GTGCAC	1 cut(s)	490
AlwI	GGATC	2 cut(s)	370, 642
AlwNI	CAGNNNCTG	1 cut(s)	348
Ama87I	CYCGRG	2 cut(s)	24, 271
AoxI	GGCC	2 cut(s)	285, 561
ApaLI	GTGCAC	1 cut(s)	490
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
AseI	ATTAAT	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	3 cut(s)	76, 97, 390
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	2 cut(s)	343, 479
AvaI	CYCGRG	2 cut(s)	24, 271
AvaII	GGWCC	3 cut(s)	76, 97, 390
BaeGI	GKGCMC	3 cut(s)	342, 436, 494
BanII	GRGCYC	1 cut(s)	369
BarI	GAAGNNNNNNTAC	2 cut(s)	581, 613
Bbv12I	GWGCWC	1 cut(s)	494
BccI	CCATC	1 cut(s)	380
BceAI	ACGGC	1 cut(s)	548
BciT130I	CCWGG	1 cut(s)	60
BciVI	GTATCC	1 cut(s)	590
BcnI	CCSGG	1 cut(s)	380
BfuI	GTATCC	1 cut(s)	590
BisI	GCNGC	2 cut(s)	285, 352
BlsI	GCNGC	2 cut(s)	286, 353
Bme1390I	CCNGG	2 cut(s)	60, 380
Bme18I	GGWCC	3 cut(s)	76, 97, 390
BmeT110I	CYCGRG	2 cut(s)	24, 271
BmgT120I	GGNCC	3 cut(s)	76, 97, 390
BmiI	GGNNCC	2 cut(s)	99, 391
BmrFI	CCNGG	2 cut(s)	60, 380
BmsI	GCATC	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	380
BsaJI	CCNNGG	3 cut(s)	59, 447, 564
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 137, 386, 631
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	3 cut(s)	59, 447, 564
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	4 cut(s)	61, 137, 386, 631
BseMI	GCAATG	1 cut(s)	84
BseSI	GKGCMC	3 cut(s)	342, 436, 494
BseYI	CCCAGC	1 cut(s)	436
Bsh1236I	CGCG	1 cut(s)	398
BshFI	GGCC	2 cut(s)	287, 563
BsiHKAI	GWGCWC	1 cut(s)	494
BsiHKCI	CYCGRG	2 cut(s)	24, 271
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	2 cut(s)	83, 403
BslI	CCNNNNNNNGG	4 cut(s)	61, 137, 386, 631
BsmFI	GGGAC	2 cut(s)	83, 403
BsnI	GGCC	2 cut(s)	287, 563
BsoBI	CYCGRG	2 cut(s)	24, 271
Bsp1286I	GDGCHC	4 cut(s)	342, 369, 436, 494
Bsp143I	GATC	3 cut(s)	333, 375, 634
BspACI	CCGC	6 cut(s)	202, 284, 351, 354, 396, 465
BspANI	GGCC	2 cut(s)	287, 563
BspFNI	CGCG	1 cut(s)	398
BspLI	GGNNCC	2 cut(s)	99, 391
BspPI	GGATC	2 cut(s)	370, 642
BsrDI	GCAATG	1 cut(s)	84
BssECI	CCNNGG	3 cut(s)	59, 447, 564
BssMI	GATC	3 cut(s)	333, 375, 634
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	2 cut(s)	115, 617
BstC8I	GCNNGC	3 cut(s)	13, 463, 582
BstDEI	CTNAG	1 cut(s)	186
BstDSI	CCRYGG	1 cut(s)	564
BstF5I	GGATG	1 cut(s)	42
BstFNI	CGCG	1 cut(s)	398
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	3 cut(s)	336, 378, 637
BstMBI	GATC	3 cut(s)	333, 375, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	351
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	2 cut(s)	15, 465
BstSCI	CCNGG	2 cut(s)	58, 378
BstSLI	GKGCMC	3 cut(s)	342, 436, 494
BstUI	CGCG	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
BsuI	GTATCC	1 cut(s)	590
BsuRI	GGCC	2 cut(s)	287, 563
BtgI	CCRYGG	1 cut(s)	564
BtsCI	GGATG	1 cut(s)	42
BtsI	GCAGTG	2 cut(s)	306, 494
BtsIMutI	CAGTG	2 cut(s)	306, 494
Cac8I	GCNNGC	3 cut(s)	13, 463, 582
CaiI	CAGNNNCTG	1 cut(s)	348
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	3 cut(s)	76, 97, 390
CviAII	CATG	5 cut(s)	12, 73, 153, 370, 462
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	3 cut(s)	335, 377, 636
DpnII	GATC	3 cut(s)	333, 375, 634
EaeI	YGGCCR	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	3 cut(s)	76, 97, 390
Eco57I	CTGAAG	1 cut(s)	608
Eco88I	CYCGRG	2 cut(s)	24, 271
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	5 cut(s)	15, 76, 156, 373, 465
FaqI	GGGAC	2 cut(s)	83, 403
FatI	CATG	5 cut(s)	11, 72, 152, 369, 461
Fnu4HI	GCNGC	2 cut(s)	285, 352
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	2 cut(s)	285, 352
FspI	TGCGCA	1 cut(s)	151
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	2 cut(s)	285, 352
GsaI	CCCAGC	1 cut(s)	440
HaeIII	GGCC	2 cut(s)	287, 563
HapII	CCGG	1 cut(s)	380
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	5 cut(s)	15, 76, 156, 373, 465
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	2 cut(s)	571, 613
HindII	GTYRAC	2 cut(s)	571, 613
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	2 cut(s)	343, 479
Hpy166II	GTNNAC	4 cut(s)	159, 492, 571, 613
Hpy188I	TCNGA	3 cut(s)	19, 80, 588
Hpy188III	TCNNGA	3 cut(s)	24, 273, 638
Hpy8I	GTNNAC	4 cut(s)	159, 492, 571, 613
HpyAV	CCTTC	2 cut(s)	499, 583
HpyCH4III	ACNGT	2 cut(s)	115, 617
HpyCH4V	TGCA	5 cut(s)	11, 259, 307, 482, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	351
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	5 cut(s)	15, 76, 156, 373, 465
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	3 cut(s)	333, 375, 634
LmnI	GCTCC	3 cut(s)	133, 187, 350
LweI	GCATC	1 cut(s)	316
MaeIII	GTNAC	4 cut(s)	140, 401, 467, 522
MalI	GATC	3 cut(s)	335, 377, 636
MboI	GATC	3 cut(s)	333, 375, 634
MfeI	CAATTG	1 cut(s)	145
MflI	RGATCY	1 cut(s)	634
MhlI	GDGCHC	4 cut(s)	342, 369, 436, 494
MluCI	AATT	5 cut(s)	49, 145, 232, 240, 415
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	6 cut(s)	46, 56, 58, 111, 502, 553
MseI	TTAA	3 cut(s)	231, 453, 473
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	2 cut(s)	60, 380
MunI	CAATTG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	1 cut(s)	351
NciI	CCSGG	1 cut(s)	380
NdeII	GATC	3 cut(s)	333, 375, 634
NlaIII	CATG	5 cut(s)	15, 76, 156, 373, 465
NlaIV	GGNNCC	2 cut(s)	99, 391
NmuCI	GTSAC	4 cut(s)	140, 401, 467, 522
NsbI	TGCGCA	1 cut(s)	151
NspI	RCATGY	2 cut(s)	15, 465
PaeI	GCATGC	2 cut(s)	15, 465
PaeR7I	CTCGAG	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	137
PfoI	TCCNGGA	1 cut(s)	378
PkrI	GCNGC	2 cut(s)	286, 353
PshBI	ATTAAT	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	99, 391
PspPI	GGNCC	3 cut(s)	76, 97, 390
PstNI	CAGNNNCTG	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	634
SaqAI	TTAA	3 cut(s)	231, 453, 473
SatI	GCNGC	2 cut(s)	285, 352
Sau3AI	GATC	3 cut(s)	333, 375, 634
Sau96I	GGNCC	3 cut(s)	76, 97, 390
ScrFI	CCNGG	2 cut(s)	60, 380
SduI	GDGCHC	4 cut(s)	342, 369, 436, 494
SetI	ASST	7 cut(s)	130, 318, 347, 453, 500, 582, 630
SfaNI	GCATC	1 cut(s)	316
Sfr274I	CTCGAG	1 cut(s)	24
SinI	GGWCC	3 cut(s)	76, 97, 390
SlaI	CTCGAG	1 cut(s)	24
SmlI	CTYRAG	2 cut(s)	24, 311
SmoI	CTYRAG	2 cut(s)	24, 311
SphI	GCATGC	2 cut(s)	15, 465
Sse9I	AATT	5 cut(s)	49, 145, 232, 240, 415
SsiI	CCGC	6 cut(s)	202, 284, 351, 354, 396, 465
SspI	AATATT	2 cut(s)	325, 649
StyD4I	CCNGG	2 cut(s)	58, 378
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	2 cut(s)	115, 617
TaqI	TCGA	3 cut(s)	25, 108, 374
TasI	AATT	5 cut(s)	49, 145, 232, 240, 415
TauI	GCSGC	2 cut(s)	287, 354
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	3 cut(s)	231, 453, 473
Tru9I	TTAA	3 cut(s)	231, 453, 473
TscAI	CASTG	2 cut(s)	306, 494
TseFI	GTSAC	4 cut(s)	140, 401, 467, 522
Tsp45I	GTSAC	4 cut(s)	140, 401, 467, 522
TspDTI	ATGAA	4 cut(s)	61, 188, 217, 397
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	2 cut(s)	306, 494
Van91I	CCANNNNNTGG	1 cut(s)	137
VneI	GTGCAC	1 cut(s)	490
VpaK11BI	GGWCC	3 cut(s)	76, 97, 390
VspI	ATTAAT	1 cut(s)	231
XceI	RCATGY	2 cut(s)	15, 465
XhoI	CTCGAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.