Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007183

Physical Location & Seq

Genomic Coordinates Reverse (-)

8503777 .. 8506837

Gene Structure 3061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24040.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCGGCTTTAAGCATCTCACTAGCTTTCTCTGTTGATTCTCTCAAACCAACCCAATCAACGAAGTTTGGCTTCTCGTCTTCTTCACATAGATATCCATTACTCTACTCGTGTAAATCTCACCGCTCCAATCTCAGATTCGCTTTCCCTCCTTCTTCAGTTTCGACAGCTACAGAAACTGGAGAAGAAAACTCTAAATCGACCGGGAATTACGCGTTTCTAGAGGAATCGTTTCGTACCGGGAGGTTTTTGAGTAACGATGAGTTAGAGAAGCTTAAAACTCTTGAAGGATTTGCGTATTTTCAAGAGCTTGAATCTGGATCGATGTGGGTTCGAGTTATGAGACATGAAGAGATGGATTCAACGGTGCATCTATTGGCTGAGTCATTTGGTGAATCGATGTTATTACCTTCTGGTTATCAGTCTGTGTTACGGTTTTTGATTAAGCAGTATTTGATTGAGAGAAGAGAAGTGTTGCCACACGCAGTTACTTTAGTTGGTTTCTTTAGGAAAAAAGTTGATGAGTTTAGTGATGATGGAGAGGAGGAGGCTGTGATGGCTGGAACTGTTGAGGTTTGTTTGGAGAAACGAGGCGCTAATGCTTCTCCTCCTTCTCCAACTCCTCCTAAGGAATCACCTTATATCTGTAACATGACTGTCAAAGAGGATCTTAGAAGGAGAGGAATTGGGTGGCATTTGTTGAAGGCGAGTGAGGAACTGATATCTCAGATTAGTCCATCAAAAGATGTATACTTGCATTGTAGGATGGTTGATGAGGCTCCTTTCAATATGTACAAGAAGGCAGGATACGAGGTTGTTAAGACAGATACAGTTTTGGTCCTTCTGATGTTACAGCGGCGTAAGCATTTGATGCGGAAGAAACTTCTTCCACTATGCACCAATCCTATAGTAGAAATGGTGGGGTCTGATAATGAGCTGACCTCCTCTGCAAATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1 Acetyltransf_10 FR47

Protein Analysis

319

Amino Acids

36.02

Weight (kDa)

6.48

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24040 AT1G24040 AT1G24040
fragaria_vesca	FvH4_4g34910 FvH4_4g34910 FvH4_4g34910 FvH4_4g34910 FvH4_4g34910
malus_domestica	MD13G1088000.v1.1 MD16G1088300.v1.1
prunus_persica	Prupe.1G258300_v2.0.a1
pyrus_communis	pycom13g07580 pycom16g07560
rosa_chinensis	RchiOBHm_Chr4g0444351
rosa_laevigata	RLG00000005838
rosa_multiflora	Rmu_sc0002841.1_g000010
rosa_roxburghii	Rroxscaffold_5G00384890
rosa_rugosa	Rorug04G0351800 Rorug04G0351900 Rorug04G0352000
rosa_samantha	Rh4AG412500 Rh4BG424000 Rh4CG438300 Rh4DG419200
rosa_wichuraiana	Rw4G035430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	126
AccI	GTMKAC	1 cut(s)	750
AccII	CGCG	1 cut(s)	215
AciI	CCGC	4 cut(s)	5, 124, 856, 874
AclWI	GGATC	2 cut(s)	328, 675
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	2 cut(s)	238, 794
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	6 cut(s)	287, 305, 314, 363, 703, 787
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	5 cut(s)	26, 170, 274, 310, 937
AluI	AGCT	5 cut(s)	26, 170, 274, 310, 937
Alw26I	GTCTC	1 cut(s)	337
AlwI	GGATC	2 cut(s)	328, 675
AlwNI	CAGNNNCTG	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	596
AspS9I	GGNCC	1 cut(s)	838
AsuC2I	CCSGG	2 cut(s)	205, 241
AsuHPI	GGTGA	3 cut(s)	113, 404, 627
AvaII	GGWCC	1 cut(s)	838
AxyI	CCTNAGG	1 cut(s)	627
BarI	GAAGNNNNNNTAC	2 cut(s)	791, 823
BauI	CACGAG	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	72
BccI	CCATC	5 cut(s)	349, 530, 550, 745, 760
BciVI	GTATCC	1 cut(s)	800
BcnI	CCSGG	2 cut(s)	205, 241
BcoDI	GTCTC	1 cut(s)	337
BfaI	CTAG	2 cut(s)	23, 221
BfmI	CTRYAG	2 cut(s)	171, 906
BfoI	RGCGCY	1 cut(s)	597
BfuI	GTATCC	1 cut(s)	800
BisI	GCNGC	2 cut(s)	6, 857
BlsI	GCNGC	2 cut(s)	7, 858
Bme1390I	CCNGG	2 cut(s)	205, 241
Bme18I	GGWCC	1 cut(s)	838
BmgT120I	GGNCC	1 cut(s)	838
BmiI	GGNNCC	1 cut(s)	780
BmrFI	CCNGG	2 cut(s)	205, 241
BmsI	GCATC	3 cut(s)	24, 379, 861
BpiI	GAAGAC	1 cut(s)	72
BplI	GAGNNNNNCTC	2 cut(s)	926, 958
BpmI	CTGGAG	1 cut(s)	201
BpuMI	CCSGG	2 cut(s)	205, 241
Bsa29I	ATCGAT	2 cut(s)	323, 398
Bse1I	ACTGG	1 cut(s)	184
Bse21I	CCTNAGG	1 cut(s)	627
BseCI	ATCGAT	2 cut(s)	323, 398
BseGI	GGATG	1 cut(s)	771
BseMII	CTCAG	3 cut(s)	148, 372, 740
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	5 cut(s)	557, 560, 597, 612, 934
Bsh1236I	CGCG	1 cut(s)	215
Bsh1285I	CGRYCG	1 cut(s)	204
BshVI	ATCGAT	2 cut(s)	323, 398
BsiEI	CGRYCG	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	204, 240
BsmAI	GTCTC	1 cut(s)	337
Bsp1407I	TGTACA	1 cut(s)	792
Bsp143I	GATC	2 cut(s)	320, 667
BspACI	CCGC	4 cut(s)	5, 124, 856, 874
BspCNI	CTCAG	3 cut(s)	147, 373, 739
BspDI	ATCGAT	2 cut(s)	323, 398
BspFNI	CGCG	1 cut(s)	215
BspLI	GGNNCC	1 cut(s)	780
BspPI	GGATC	2 cut(s)	328, 675
BsrBI	CCGCTC	1 cut(s)	126
BsrGI	TGTACA	1 cut(s)	792
BsrI	ACTGG	1 cut(s)	184
BssMI	GATC	2 cut(s)	320, 667
BssNAI	GTATAC	1 cut(s)	751
BssSI	CACGAG	1 cut(s)	109
Bst1107I	GTATAC	1 cut(s)	751
Bst2BI	CACGAG	1 cut(s)	109
Bst4CI	ACNGT	5 cut(s)	367, 435, 568, 658, 832
Bst6I	CTCTTC	2 cut(s)	345, 460
BstAPI	GCANNNNNTGC	1 cut(s)	871
BstAUI	TGTACA	1 cut(s)	792
BstDEI	CTNAG	5 cut(s)	134, 381, 627, 671, 726
BstF5I	GGATG	1 cut(s)	771
BstFNI	CGCG	1 cut(s)	215
BstH2I	RGCGCY	1 cut(s)	597
BstHHI	GCGC	1 cut(s)	596
BstKTI	GATC	2 cut(s)	323, 670
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	2 cut(s)	320, 667
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	3 cut(s)	557, 862, 871
BstSCI	CCNGG	2 cut(s)	203, 239
BstSFI	CTRYAG	2 cut(s)	171, 906
BstUI	CGCG	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	667
BstYI	RGATCY	1 cut(s)	667
BstZ17I	GTATAC	1 cut(s)	751
Bsu15I	ATCGAT	2 cut(s)	323, 398
Bsu36I	CCTNAGG	1 cut(s)	627
BsuI	GTATCC	1 cut(s)	800
BsuTUI	ATCGAT	2 cut(s)	323, 398
BtsCI	GGATG	1 cut(s)	771
CaiI	CAGNNNCTG	1 cut(s)	179
CfoI	GCGC	1 cut(s)	596
Cfr13I	GGNCC	1 cut(s)	838
ClaI	ATCGAT	2 cut(s)	323, 398
Csp6I	GTAC	2 cut(s)	237, 793
CviAII	CATG	2 cut(s)	347, 652
CviQI	GTAC	2 cut(s)	237, 793
DdeI	CTNAG	5 cut(s)	134, 381, 627, 671, 726
DpnI	GATC	2 cut(s)	322, 669
DpnII	GATC	2 cut(s)	320, 667
Eam1104I	CTCTTC	2 cut(s)	345, 460
EarI	CTCTTC	2 cut(s)	345, 460
Eco32I	GATATC	2 cut(s)	95, 723
Eco47I	GGWCC	1 cut(s)	838
Eco57I	CTGAAG	1 cut(s)	141
Eco81I	CCTNAGG	1 cut(s)	627
EcoRV	GATATC	2 cut(s)	95, 723
FaeI	CATG	2 cut(s)	350, 655
FaiI	YATR	9 cut(s)	90, 341, 348, 642, 653, 751, 791, 895, 908
FalI	AAGNNNNNCTT	4 cut(s)	56, 88, 654, 686
FatI	CATG	2 cut(s)	346, 651
FblI	GTMKAC	1 cut(s)	750
Fnu4HI	GCNGC	2 cut(s)	6, 857
FokI	GGATG	1 cut(s)	778
Fsp4HI	GCNGC	2 cut(s)	6, 857
FspBI	CTAG	2 cut(s)	23, 221
GlaI	GCGC	1 cut(s)	595
GluI	GCNGC	2 cut(s)	6, 857
GsuI	CTGGAG	1 cut(s)	201
HaeII	RGCGCY	1 cut(s)	597
HapII	CCGG	2 cut(s)	204, 240
HhaI	GCGC	1 cut(s)	596
Hin1II	CATG	2 cut(s)	350, 655
Hin6I	GCGC	1 cut(s)	594
HinP1I	GCGC	1 cut(s)	594
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	8 cut(s)	38, 138, 227, 314, 359, 383, 395, 632
HpaII	CCGG	2 cut(s)	204, 240
HphI	GGTGA	3 cut(s)	113, 404, 627
Hpy166II	GTNNAC	1 cut(s)	751
Hpy188I	TCNGA	4 cut(s)	137, 729, 846, 928
Hpy188III	TCNNGA	4 cut(s)	221, 284, 305, 318
Hpy8I	GTNNAC	1 cut(s)	751
HpyAV	CCTTC	8 cut(s)	162, 281, 420, 621, 669, 697, 793, 851
HpyCH4III	ACNGT	5 cut(s)	367, 435, 568, 658, 832
HpyCH4V	TGCA	4 cut(s)	370, 757, 897, 950
HpyF10VI	GCNNNNNNNGC	3 cut(s)	557, 862, 871
HpyF3I	CTNAG	5 cut(s)	134, 381, 627, 671, 726
Hsp92II	CATG	2 cut(s)	350, 655
HspAI	GCGC	1 cut(s)	594
Kzo9I	GATC	2 cut(s)	320, 667
LmnI	GCTCC	2 cut(s)	131, 784
LpnPI	CCDG	7 cut(s)	165, 217, 253, 303, 399, 546, 789
LweI	GCATC	3 cut(s)	24, 379, 861
MaeI	CTAG	2 cut(s)	23, 221
MaeIII	GTNAC	5 cut(s)	254, 429, 487, 647, 849
MalI	GATC	2 cut(s)	322, 669
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	2 cut(s)	320, 667
MboII	GAAGA	8 cut(s)	72, 75, 147, 197, 362, 477, 878, 889
MflI	RGATCY	1 cut(s)	667
MluCI	AATT	2 cut(s)	208, 684
MluI	ACGCGT	1 cut(s)	213
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	1 cut(s)	641
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	4 cut(s)	11, 276, 444, 819
MspA1I	CMGCKG	1 cut(s)	856
MspI	CCGG	2 cut(s)	204, 240
MspR9I	CCNGG	2 cut(s)	205, 241
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	3 cut(s)	557, 862, 871
NciI	CCSGG	2 cut(s)	205, 241
NdeII	GATC	2 cut(s)	320, 667
NlaIII	CATG	2 cut(s)	350, 655
NlaIV	GGNNCC	1 cut(s)	780
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	7 cut(s)	38, 138, 227, 314, 359, 395, 632
PkrI	GCNGC	2 cut(s)	7, 858
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PspN4I	GGNNCC	1 cut(s)	780
PspPI	GGNCC	1 cut(s)	838
PstNI	CAGNNNCTG	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	667
RsaI	GTAC	2 cut(s)	238, 794
RsaNI	GTAC	2 cut(s)	237, 793
SaqAI	TTAA	4 cut(s)	11, 276, 444, 819
SatI	GCNGC	2 cut(s)	6, 857
Sau3AI	GATC	2 cut(s)	320, 667
Sau96I	GGNCC	1 cut(s)	838
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	2 cut(s)	205, 241
SfaNI	GCATC	3 cut(s)	24, 379, 861
SfcI	CTRYAG	2 cut(s)	171, 906
SinI	GGWCC	1 cut(s)	838
Sse9I	AATT	2 cut(s)	208, 684
SsiI	CCGC	4 cut(s)	5, 124, 856, 874
SspMI	CTAG	2 cut(s)	23, 221
StyD4I	CCNGG	2 cut(s)	203, 239
TaaI	ACNGT	5 cut(s)	367, 435, 568, 658, 832
TaqI	TCGA	5 cut(s)	164, 200, 323, 334, 398
TasI	AATT	2 cut(s)	208, 684
TatI	WGTACW	1 cut(s)	792
TauI	GCSGC	2 cut(s)	8, 859
TfiI	GAWTC	7 cut(s)	38, 138, 227, 314, 359, 395, 632
Tru1I	TTAA	4 cut(s)	11, 276, 444, 819
Tru9I	TTAA	4 cut(s)	11, 276, 444, 819
TspDTI	ATGAA	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	838
XbaI	TCTAGA	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	750
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	2 cut(s)	23, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.