Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007183

Physical Location & Seq

Genomic Coordinates Reverse (-)

26809986 .. 26811701

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G258300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCTGCAACAGTTTCACTCTCTTTTTCCTTAGATCCACAGCACCACCATCTCTTTCCCAACACAACCCACTTCAAGCCTCACCAAACTCCCCTTCTTCCCTTCTCTGCCCCAACCTCAACTCTTTTCCCCAAATACCCACTTGCTATTTTCCATAAATCACACCCTTCCTCTTTCAAATCTTCCTCCTCTCCATCTCATTCTTCAACAACGACAACAACAACAACAACAACTGCTTCTGATACAACTGCTACTGATACTGCTACAACTACAAGCACAACCACAACATCTTCGTCATTTCTTGAATACCCACTTAGAACAGGTCGATTTCTGAGCAGTGAAGAGCTCGAGCAACTCAAATTGCTTGAGAATTTCAGGTATTATCAGGAATTGGAATCTGGGTCGATGTGGGTTCGGGTGATGAGGCCGGAGGAAATGGACATCACTGTTGGGTTGCTGGCTGAGTCGTTTGCAGAGTCGATGCTTTTGCCTTCTGGATATGTCTCTGTGTTGGGCTACTTGGTCAAGCAATACTTGTTTGAGCGGATGGAGCTATCGCCACACACTGCCACGCTTATTGGGTTTTACAGAAGACGTAAAGAAGAGGGTGAAGAACAACAAGAAAAAAACACAGAAGATGAAGAAGAAGTGGATGAAGTTGAATTTTTGGCGGGGACTGTGGAAGTTTGCTTTGACAAAAAGGGTGCCAACGCTTCTCCTCCTACACCCATTCCTCCCAAGAACTCGCCTTATATAAGCAACATGGCGGTGAAGAAGTCGCTTAGGAGGAGGGGCATCGGCTGGCATCTTTTGAAAGCAAGCGAGGAACTTATATCTCAGATGAGTTCCACAAGAGAGGCGTATTTGCATTGCAGAATGATTGATACAGCTCCATTCAACATGTACAAAAAAGCAGGTTACGACATTGTAAAGACGGATAACATTTTGGTTATGTTGCTGTTGCAGAGGCGCAAGCACTTAATGTGCAAGAAACTTCCAGTCTTAACCAGCTTTTCAGAATCAGATACATTCTGTTCTGAAGAGGAATTAACATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1 Acetyltransf_10 FR47

Protein Analysis

353

Amino Acids

39.78

Weight (kDa)

5.98

Isoelectric Point (pI)

56.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24040 AT1G24040 AT1G24040
fragaria_vesca	FvH4_4g34910 FvH4_4g34910 FvH4_4g34910 FvH4_4g34910 FvH4_4g34910
malus_domestica	MD13G1088000.v1.1 MD16G1088300.v1.1
prunus_persica	Prupe.1G258300_v2.0.a1
pyrus_communis	pycom13g07580 pycom16g07560
rosa_chinensis	RchiOBHm_Chr4g0444351
rosa_laevigata	RLG00000005838
rosa_multiflora	Rmu_sc0002841.1_g000010
rosa_roxburghii	Rroxscaffold_5G00384890
rosa_rugosa	Rorug04G0351800 Rorug04G0351900 Rorug04G0352000
rosa_samantha	Rh4AG412500 Rh4BG424000 Rh4CG438300 Rh4DG419200
rosa_wichuraiana	Rw4G035430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	905
AccB1I	GGYRCC	1 cut(s)	704
AccBSI	CCGCTC	1 cut(s)	544
AciI	CCGC	3 cut(s)	544, 671, 767
AclWI	GGATC	1 cut(s)	29
AcsI	RAATTY	2 cut(s)	370, 662
AcuI	CTGAAG	1 cut(s)	1059
AfaI	GTAC	1 cut(s)	905
AflIII	ACRYGT	1 cut(s)	900
AgsI	TTSAA	7 cut(s)	76, 178, 207, 305, 662, 814, 898
AjuI	GAANNNNNNNTTGG	2 cut(s)	78, 110
AluBI	AGCT	4 cut(s)	346, 553, 890, 1011
AluI	AGCT	4 cut(s)	346, 553, 890, 1011
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	508
AlwI	GGATC	1 cut(s)	29
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	1 cut(s)	425
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	370, 662
AspLEI	GCGC	1 cut(s)	972
AsuHPI	GGTGA	4 cut(s)	74, 430, 620, 781
AvaI	CYCGRG	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	704
BanII	GRGCYC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	598
Bbv12I	GWGCWC	1 cut(s)	348
BccI	CCATC	3 cut(s)	57, 202, 541
BcgI	CGANNNNNNTGC	2 cut(s)	469, 503
BcoDI	GTCTC	1 cut(s)	508
BfuAI	ACCTGC	1 cut(s)	905
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmeT110I	CYCGRG	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	706
BmsI	GCATC	3 cut(s)	471, 804, 814
BpiI	GAAGAC	1 cut(s)	598
Bpu10I	CCTNAGC	1 cut(s)	782
BpuEI	CTTGAG	1 cut(s)	386
Bse1I	ACTGG	1 cut(s)	998
Bse3DI	GCAATG	1 cut(s)	868
BseGI	GGATG	2 cut(s)	552, 658
BseMI	GCAATG	1 cut(s)	868
BseMII	CTCAG	3 cut(s)	323, 453, 851
BseNI	ACTGG	1 cut(s)	998
BseRI	GAGGAG	3 cut(s)	178, 708, 802
BshFI	GGCC	1 cut(s)	427
BshNI	GGYRCC	1 cut(s)	704
BsiHKAI	GWGCWC	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	428
BslFI	GGGAC	1 cut(s)	688
BsmAI	GTCTC	1 cut(s)	508
BsmFI	GGGAC	1 cut(s)	688
BsnI	GGCC	1 cut(s)	427
BsoBI	CYCGRG	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp1407I	TGTACA	1 cut(s)	903
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	3 cut(s)	544, 671, 767
BspANI	GGCC	1 cut(s)	427
BspCNI	CTCAG	3 cut(s)	324, 454, 850
BspHI	TCATGA	1 cut(s)	1055
BspLI	GGNNCC	1 cut(s)	706
BspMI	ACCTGC	1 cut(s)	905
BspPI	GGATC	1 cut(s)	29
BspQI	GCTCTTC	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	704
BsrBI	CCGCTC	1 cut(s)	544
BsrDI	GCAATG	1 cut(s)	868
BsrGI	TGTACA	1 cut(s)	903
BsrI	ACTGG	1 cut(s)	998
BssMI	GATC	1 cut(s)	34
Bst4CI	ACNGT	3 cut(s)	13, 448, 679
Bst6I	CTCTTC	3 cut(s)	336, 597, 1035
BstAUI	TGTACA	1 cut(s)	903
BstC8I	GCNNGC	4 cut(s)	459, 803, 820, 974
BstDEI	CTNAG	6 cut(s)	31, 314, 332, 462, 782, 837
BstF5I	GGATG	2 cut(s)	552, 658
BstHHI	GCGC	1 cut(s)	972
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	1 cut(s)	550
BstNSI	RCATGY	1 cut(s)	904
BstV2I	GAAGAC	1 cut(s)	598
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	552, 658
BtsI	GCAGTG	2 cut(s)	343, 564
BtsIMutI	CAGTG	3 cut(s)	343, 444, 564
BveI	ACCTGC	1 cut(s)	905
Cac8I	GCNNGC	4 cut(s)	459, 803, 820, 974
CciI	TCATGA	1 cut(s)	1055
CfoI	GCGC	1 cut(s)	972
Csp6I	GTAC	1 cut(s)	904
CspCI	CAANNNNNGTGG	2 cut(s)	559, 594
CviAII	CATG	3 cut(s)	763, 901, 1056
CviQI	GTAC	1 cut(s)	904
DdeI	CTNAG	6 cut(s)	31, 314, 332, 462, 782, 837
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eam1104I	CTCTTC	3 cut(s)	336, 597, 1035
EarI	CTCTTC	3 cut(s)	336, 597, 1035
Ecl136II	GAGCTC	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	1059
Eco88I	CYCGRG	1 cut(s)	347
EcoICRI	GAGCTC	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	348
FaeI	CATG	3 cut(s)	766, 904, 1059
FaiI	YATR	9 cut(s)	156, 501, 753, 755, 764, 833, 902, 953, 1057
FalI	AAGNNNNNCTT	2 cut(s)	518, 550
FaqI	GGGAC	1 cut(s)	688
FatI	CATG	3 cut(s)	762, 900, 1055
FauI	CCCGC	1 cut(s)	664
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	559, 665
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	6
GlaI	GCGC	1 cut(s)	971
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	427
HapII	CCGG	1 cut(s)	428
HhaI	GCGC	1 cut(s)	972
Hin1II	CATG	3 cut(s)	766, 904, 1059
Hin6I	GCGC	1 cut(s)	970
HinP1I	GCGC	1 cut(s)	970
HinfI	GANTC	4 cut(s)	395, 464, 476, 1019
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	4 cut(s)	74, 430, 620, 781
Hpy188I	TCNGA	6 cut(s)	241, 333, 840, 1018, 1024, 1039
Hpy188III	TCNNGA	4 cut(s)	302, 386, 495, 1056
HpyAV	CCTTC	4 cut(s)	104, 112, 177, 501
HpyCH4III	ACNGT	3 cut(s)	13, 448, 679
HpyCH4IV	ACGT	1 cut(s)	595
HpyCH4V	TGCA	6 cut(s)	8, 473, 868, 873, 964, 987
HpyF10VI	GCNNNNNNNGC	1 cut(s)	550
HpyF3I	CTNAG	6 cut(s)	31, 314, 332, 462, 782, 837
HpySE526I	ACGT	1 cut(s)	595
Hsp92II	CATG	3 cut(s)	766, 904, 1059
HspAI	GCGC	1 cut(s)	970
Kzo9I	GATC	1 cut(s)	34
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	2 cut(s)	550, 895
LweI	GCATC	3 cut(s)	471, 804, 814
MaeII	ACGT	1 cut(s)	595
MaeIII	GTNAC	1 cut(s)	917
MalI	GATC	1 cut(s)	36
MbiI	CCGCTC	1 cut(s)	544
MboI	GATC	1 cut(s)	34
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	5 cut(s)	359, 370, 389, 662, 1046
MlyI	GAGTC	2 cut(s)	473, 485
MseI	TTAA	3 cut(s)	980, 1004, 1049
MslI	CAYNNNNRTG	1 cut(s)	767
MspI	CCGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	1 cut(s)	550
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	766, 904, 1059
NlaIV	GGNNCC	1 cut(s)	706
NspI	RCATGY	1 cut(s)	904
PaeR7I	CTCGAG	1 cut(s)	347
PagI	TCATGA	1 cut(s)	1055
PciI	ACATGT	1 cut(s)	900
PciSI	GCTCTTC	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	395, 1019
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	472, 484
PpsI	GAGTC	2 cut(s)	472, 484
PscI	ACATGT	1 cut(s)	900
Psp124BI	GAGCTC	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	706
PspXI	VCTCGAGB	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	1 cut(s)	905
RsaNI	GTAC	1 cut(s)	904
RseI	CAYNNNNRTG	1 cut(s)	767
SacI	GAGCTC	1 cut(s)	348
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	3 cut(s)	980, 1004, 1049
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	34
SchI	GAGTC	2 cut(s)	473, 485
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	9 cut(s)	119, 325, 348, 380, 555, 598, 892, 919, 1013
SfaNI	GCATC	3 cut(s)	471, 804, 814
Sfr274I	CTCGAG	1 cut(s)	347
SlaI	CTCGAG	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	767
SmlI	CTYRAG	2 cut(s)	347, 365
SmoI	CTYRAG	2 cut(s)	347, 365
Sse9I	AATT	5 cut(s)	359, 370, 389, 662, 1046
SsiI	CCGC	3 cut(s)	544, 671, 767
SstI	GAGCTC	1 cut(s)	348
TaaI	ACNGT	3 cut(s)	13, 448, 679
TaiI	ACGT	1 cut(s)	598
TaqI	TCGA	4 cut(s)	325, 348, 404, 479
TasI	AATT	5 cut(s)	359, 370, 389, 662, 1046
TatI	WGTACW	1 cut(s)	903
TfiI	GAWTC	2 cut(s)	395, 1019
Tru1I	TTAA	3 cut(s)	980, 1004, 1049
Tru9I	TTAA	3 cut(s)	980, 1004, 1049
TscAI	CASTG	3 cut(s)	343, 451, 571
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	654, 669
TspGWI	ACGGA	1 cut(s)	950
TspRI	CASTG	3 cut(s)	343, 451, 571
XapI	RAATTY	2 cut(s)	370, 662
XceI	RCATGY	1 cut(s)	904
XhoI	CTCGAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.