MD13G1088000.v1.1
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0007183
Physical Location & Seq
Forward (+)
6171691 .. 6173449
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1088000.v1.1.491

Sequence Viewer

Length: 1092 bp
ATGGCTGCAACTGTTTCGCTCTCTTTCTCTTTGGATCCACAGCAGTACCACCAGCACCAGCACCAGCACCACTGCCATCTCTTCTCCGCCACCCACCACTTCAAACCCCACCAAAGCATTCCCTTCACTCCCTCTACCTCCTCAACTATTCTCCCCAAGTACCCACTTTCTATTTTCCCCAAATCAGACCGTTTCGCCTTCAAAGCCTCCTCCTCCCCATCTCATTCTCCCACCACCACCACCGCCACCACCACAGCTGCTGATTCCACTACTACTGATTCCACCACCATCACTACTGATTCCGATACTACTACTTCAACAACTTCGTCATTTCTCGAATACCCTCTTAGAACAGGTAAGTTTCTGAGCAGTGAAGAGCTCGAGCAGCTCAAACTCCTCGAGGATTTCAGGTACTACCAGGAATTGGAATCTGGGTCGATGTGGGTTCGGGTGATGAGGCCGGAGGAGTTGGACATCACCGTCGGGTTGCTCGCCGAGTCGTTCGCGGAGTCGATGCTTTTGCCTTCTGGGTATGTGTCTGTGCTGGGCTACTTGGTCAAGCAGTACTTGTTTGAAAGAATGGAGCTTCTTCCCAACACCGCCACGCTCATCGCGTTTTACAGAAGAAGAAAAGAAGAGGGCAAAGAAGAAGAAGAACAACACCTGGAAGAAGTAGAAGAAGAAGATGAAGTTGAGCTTTTGGCGGGGACTGTGGAAGTTTGCTTTAACAAAAAGGGTGCCGTTGCCTCTCCTCCTACACCAACTCCTCCCAAGAATTCGCCTTACATTAGCAACATGGCGGTGAAAAAATCGCTTCGGAGGAGGGGCATTGGATGGCATCTTTTGAAAGCAAGCGAGGAACTAATCTCGCAGATGAGTTTCTCAAGAGAGGTGTACTTGCATTGCAGGATGATTGATACAGCTCCATTCAACATGTATAAAAAAGCAGGATACGACATTGTAGAGACGGATACCATTTTGGTTTTGTTGCTGTTGCAGAGGCGCAAGCACTTAATGTGCAAGAAACTTCCAGTCTTAACCAACTTTTCAGAATCGGACACGTTCTGTTCTCAAGAGGAATTAACACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 FR47

Protein Analysis

364

Amino Acids

41.23

Weight (kDa)

5.72

Isoelectric Point (pI)

57.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 213 - 318 2.9e-08 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 479
AbsI CCTCGAGG 1 cut(s) 398
AccB1I GGYRCC 1 cut(s) 737
AccB7I CCANNNNNTGG 1 cut(s) 424
AccII CGCG 2 cut(s) 506, 614
AciI CCGC 6 cut(s) 87, 243, 506, 600, 704, 800
AclWI GGATC 2 cut(s) 29, 42
AcsI RAATTY 1 cut(s) 775
AfaI GTAC 5 cut(s) 47, 161, 413, 566, 896
AfiI CCNNNNNNNGG 1 cut(s) 424
AflIII ACRYGT 2 cut(s) 933, 1059
AgsI TTSAA 6 cut(s) 103, 202, 318, 575, 847, 931
AjnI CCWGG 2 cut(s) 417, 663
AluBI AGCT 6 cut(s) 257, 379, 388, 586, 697, 923
AluI AGCT 6 cut(s) 257, 379, 388, 586, 697, 923
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 1 cut(s) 959
AlwI GGATC 2 cut(s) 29, 42
AlwNI CAGNNNCTG 1 cut(s) 260
Ama87I CYCGRG 2 cut(s) 380, 398
AoxI GGCC 1 cut(s) 458
ApeKI GCWGC 3 cut(s) 5, 257, 385
ApoI RAATTY 1 cut(s) 775
AspLEI GCGC 1 cut(s) 1005
AsuHPI GGTGA 3 cut(s) 463, 469, 814
AvaI CYCGRG 2 cut(s) 380, 398
BaeI ACNNNNGTAYC 2 cut(s) 29, 62
BamHI GGATCC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 737
BanII GRGCYC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 2 cut(s) 244, 397
BccI CCATC 4 cut(s) 84, 226, 296, 828
BceAI ACGGC 1 cut(s) 725
BcgI CGANNNNNNTGC 3 cut(s) 31, 502, 536
BciT130I CCWGG 2 cut(s) 419, 665
BciVI GTATCC 2 cut(s) 944, 964
BcoDI GTCTC 1 cut(s) 959
BfuI GTATCC 2 cut(s) 944, 964
BisI GCNGC 3 cut(s) 6, 258, 386
BlsI GCNGC 3 cut(s) 7, 259, 387
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 2 cut(s) 419, 665
BmeT110I CYCGRG 2 cut(s) 380, 398
BmiI GGNNCC 2 cut(s) 36, 739
BmrFI CCNGG 2 cut(s) 419, 665
BmsI GCATC 2 cut(s) 504, 847
BpuEI CTTGAG 2 cut(s) 868, 1056
BsaXI ACNNNNNCTCC 2 cut(s) 748, 778
Bsc4I CCNNNNNNNGG 1 cut(s) 424
Bse1I ACTGG 1 cut(s) 1031
Bse3DI GCAATG 1 cut(s) 901
BseBI CCWGG 2 cut(s) 419, 665
BseGI GGATG 2 cut(s) 839, 915
BseLI CCNNNNNNNGG 1 cut(s) 424
BseMI GCAATG 1 cut(s) 901
BseMII CTCAG 1 cut(s) 356
BseNI ACTGG 1 cut(s) 1031
BseRI GAGGAG 8 cut(s) 130, 199, 202, 386, 479, 741, 756, 835
BseXI GCAGC 2 cut(s) 244, 397
BseYI CCCAGC 1 cut(s) 544
Bsh1236I CGCG 2 cut(s) 506, 614
BshFI GGCC 1 cut(s) 460
BshNI GGYRCC 1 cut(s) 737
BsiHKAI GWGCWC 1 cut(s) 381
BsiHKCI CYCGRG 2 cut(s) 380, 398
BsiSI CCGG 1 cut(s) 461
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 1 cut(s) 424
BsmAI GTCTC 1 cut(s) 959
BsmBI CGTCTC 1 cut(s) 959
BsmFI GGGAC 1 cut(s) 721
BsmI GAATGC 1 cut(s) 117
BsnI GGCC 1 cut(s) 460
BsoBI CYCGRG 2 cut(s) 380, 398
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 6 cut(s) 87, 243, 506, 600, 704, 800
BspANI GGCC 1 cut(s) 460
BspCNI CTCAG 1 cut(s) 357
BspFNI CGCG 2 cut(s) 506, 614
BspLI GGNNCC 2 cut(s) 36, 739
BspPI GGATC 2 cut(s) 29, 42
BspQI GCTCTTC 1 cut(s) 369
BspT107I GGYRCC 1 cut(s) 737
BsrDI GCAATG 1 cut(s) 901
BsrI ACTGG 1 cut(s) 1031
BssMI GATC 1 cut(s) 34
Bst2UI CCWGG 2 cut(s) 419, 665
Bst4CI ACNGT 4 cut(s) 13, 191, 481, 712
Bst6I CTCTTC 3 cut(s) 86, 369, 630
BstC8I GCNNGC 3 cut(s) 492, 853, 1007
BstDEI CTNAG 2 cut(s) 347, 365
BstF5I GGATG 2 cut(s) 839, 915
BstFNI CGCG 2 cut(s) 506, 614
BstHHI GCGC 1 cut(s) 1005
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 959
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 2 cut(s) 203, 385
BstNI CCWGG 2 cut(s) 419, 665
BstNSI RCATGY 1 cut(s) 937
BstSCI CCNGG 2 cut(s) 417, 663
BstUI CGCG 2 cut(s) 506, 614
BstV1I GCAGC 2 cut(s) 244, 397
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuI GTATCC 2 cut(s) 944, 964
BsuRI GGCC 1 cut(s) 460
BtgZI GCGATG 1 cut(s) 595
BtsCI GGATG 2 cut(s) 839, 915
BtsI GCAGTG 2 cut(s) 70, 376
BtsIMutI CAGTG 2 cut(s) 70, 376
Cac8I GCNNGC 3 cut(s) 492, 853, 1007
CaiI CAGNNNCTG 1 cut(s) 260
CfoI GCGC 1 cut(s) 1005
Csp6I GTAC 5 cut(s) 46, 160, 412, 565, 895
CviAII CATG 3 cut(s) 796, 934, 1089
CviQI GTAC 5 cut(s) 46, 160, 412, 565, 895
DdeI CTNAG 2 cut(s) 347, 365
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
DrdI GACNNNNNNGTC 1 cut(s) 479
DseDI GACNNNNNNGTC 1 cut(s) 479
Eam1104I CTCTTC 3 cut(s) 86, 369, 630
EarI CTCTTC 3 cut(s) 86, 369, 630
EciI GGCGGA 1 cut(s) 76
Ecl136II GAGCTC 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 381
Eco53kI GAGCTC 1 cut(s) 379
Eco88I CYCGRG 2 cut(s) 380, 398
EcoICRI GAGCTC 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 775
EcoRII CCWGG 2 cut(s) 417, 663
EcoT38I GRGCYC 1 cut(s) 381
Esp3I CGTCTC 1 cut(s) 959
FaeI CATG 3 cut(s) 799, 937, 1092
FaiI YATR 5 cut(s) 534, 797, 935, 939, 1090
FalI AAGNNNNNCTT 4 cut(s) 551, 583, 681, 713
FaqI GGGAC 1 cut(s) 721
FatI CATG 3 cut(s) 795, 933, 1088
FauI CCCGC 1 cut(s) 697
Fnu4HI GCNGC 3 cut(s) 6, 258, 386
FokI GGATG 2 cut(s) 846, 922
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 3 cut(s) 6, 258, 386
GlaI GCGC 1 cut(s) 1004
GluI GCNGC 3 cut(s) 6, 258, 386
GsaI CCCAGC 1 cut(s) 548
HaeIII GGCC 1 cut(s) 460
HapII CCGG 1 cut(s) 461
HhaI GCGC 1 cut(s) 1005
Hin1II CATG 3 cut(s) 799, 937, 1092
Hin6I GCGC 1 cut(s) 1003
HinP1I GCGC 1 cut(s) 1003
HinfI GANTC 7 cut(s) 263, 278, 299, 428, 497, 509, 1052
HpaII CCGG 1 cut(s) 461
HphI GGTGA 3 cut(s) 463, 469, 814
Hpy166II GTNNAC 1 cut(s) 895
Hpy188I TCNGA 6 cut(s) 187, 304, 366, 819, 1051, 1057
Hpy188III TCNNGA 3 cut(s) 335, 885, 1073
Hpy8I GTNNAC 1 cut(s) 895
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 3 cut(s) 133, 208, 534
HpyCH4III ACNGT 4 cut(s) 13, 191, 481, 712
HpyCH4IV ACGT 1 cut(s) 1061
HpyCH4V TGCA 5 cut(s) 8, 901, 906, 997, 1020
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 385
HpyF3I CTNAG 2 cut(s) 347, 365
HpySE526I ACGT 1 cut(s) 1061
Hsp92II CATG 3 cut(s) 799, 937, 1092
HspAI GCGC 1 cut(s) 1003
Kzo9I GATC 1 cut(s) 34
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 2 cut(s) 583, 928
Lsp1109I GCAGC 2 cut(s) 244, 397
LweI GCATC 2 cut(s) 504, 847
MaeII ACGT 1 cut(s) 1061
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 3 cut(s) 422, 775, 1079
MlyI GAGTC 2 cut(s) 506, 518
MmeI TCCRAC 1 cut(s) 450
MseI TTAA 4 cut(s) 726, 1013, 1037, 1082
MslI CAYNNNNRTG 1 cut(s) 800
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 1 cut(s) 461
MspR9I CCNGG 2 cut(s) 419, 665
Mva1269I GAATGC 1 cut(s) 117
MvaI CCWGG 2 cut(s) 419, 665
MvnI CGCG 2 cut(s) 506, 614
MwoI GCNNNNNNNGC 2 cut(s) 203, 385
NdeII GATC 1 cut(s) 34
NlaIII CATG 3 cut(s) 799, 937, 1092
NlaIV GGNNCC 2 cut(s) 36, 739
NmeAIII GCCGAG 1 cut(s) 520
NspI RCATGY 1 cut(s) 937
PaeR7I CTCGAG 2 cut(s) 380, 398
PciI ACATGT 1 cut(s) 933
PciSI GCTCTTC 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 611
PctI GAATGC 1 cut(s) 117
PfeI GAWTC 5 cut(s) 263, 278, 299, 428, 1052
PflMI CCANNNNNTGG 1 cut(s) 424
PkrI GCNGC 3 cut(s) 7, 259, 387
PleI GAGTC 2 cut(s) 505, 517
PpsI GAGTC 2 cut(s) 505, 517
PscI ACATGT 1 cut(s) 933
Psp124BI GAGCTC 1 cut(s) 381
Psp6I CCWGG 2 cut(s) 417, 663
PspFI CCCAGC 1 cut(s) 544
PspGI CCWGG 2 cut(s) 417, 663
PspN4I GGNNCC 2 cut(s) 36, 739
PspXI VCTCGAGB 2 cut(s) 380, 398
PstNI CAGNNNCTG 1 cut(s) 260
PsuI RGATCY 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 5 cut(s) 47, 161, 413, 566, 896
RsaNI GTAC 5 cut(s) 46, 160, 412, 565, 895
RseI CAYNNNNRTG 1 cut(s) 800
SacI GAGCTC 1 cut(s) 381
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 4 cut(s) 726, 1013, 1037, 1082
SatI GCNGC 3 cut(s) 6, 258, 386
Sau3AI GATC 1 cut(s) 34
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 2 cut(s) 506, 518
ScrFI CCNGG 2 cut(s) 419, 665
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 2 cut(s) 504, 847
Sfr274I CTCGAG 2 cut(s) 380, 398
SlaI CTCGAG 2 cut(s) 380, 398
SmiMI CAYNNNNRTG 1 cut(s) 800
SmlI CTYRAG 4 cut(s) 380, 398, 883, 1071
SmoI CTYRAG 4 cut(s) 380, 398, 883, 1071
Sse9I AATT 3 cut(s) 422, 775, 1079
SsiI CCGC 6 cut(s) 87, 243, 506, 600, 704, 800
SstI GAGCTC 1 cut(s) 381
StyD4I CCNGG 2 cut(s) 417, 663
TaaI ACNGT 4 cut(s) 13, 191, 481, 712
TaiI ACGT 1 cut(s) 1064
TaqI TCGA 5 cut(s) 336, 381, 399, 437, 512
TasI AATT 3 cut(s) 422, 775, 1079
TatI WGTACW 2 cut(s) 564, 894
TfiI GAWTC 5 cut(s) 263, 278, 299, 428, 1052
Tru1I TTAA 4 cut(s) 726, 1013, 1037, 1082
Tru9I TTAA 4 cut(s) 726, 1013, 1037, 1082
TscAI CASTG 2 cut(s) 77, 376
TseI GCWGC 3 cut(s) 5, 257, 385
TspDTI ATGAA 1 cut(s) 702
TspGWI ACGGA 1 cut(s) 983
TspRI CASTG 2 cut(s) 77, 376
Van91I CCANNNNNTGG 1 cut(s) 424
XapI RAATTY 1 cut(s) 775
XceI RCATGY 1 cut(s) 937
XhoI CTCGAG 2 cut(s) 380, 398
ZrmI AGTACT 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.