Rorug04G0351800
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007183
Physical Location & Seq
Forward (+)
52360924 .. 52364159
3236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0351800.1

Sequence Viewer

Length: 675 bp
ATGAAGTACTTAGAATACACACCCTTGGAGCGATTAAATGATTTCTTTAGTCATTTAAATCTTGGAGAGAGAACCATTAAGGGATGTCTTGAAGCTTACTCTTGTAAACACACGGGATCGGATAAGAAACTGTCTCTGAGTTTGGAGAATGAGATTCTTGACTATATCGGAAAATCTTCTGACACTGACTCTTCCTCACCTGCTGAGTTCCTTCTGAGCAGATCCAGCCGGAAGACATTGATTTACCTGGTCTTGACCCTCTATCACTTGTATCCAGACTATGACTTCAGTGCCATCAACGCTCACCAGTTCTTCACAGAGGAAACCTGGGACAGTTTTAAGCAGATTTTTGATACCTATATGGTGGAAGCATCAAAGGAATGGACAGAGACAAATGAGGGTAGTTCCCTGCTGGATACCTTGTACAAGGCTTTGGATGAGGTTGTTGGATTAGCAGATTGCGAAGTTTATGGTTACAATCCTGATCCTGATGCTGATCCGTTTCCGGAAAGAGGAGCTGTATGGTCATTCAATTTCTTTTTCTACAATAGAAAACTGAAAAGGGTTGTGAGTTTCCGTATCTGCTGTTTAAGTAACTTGGTGACTGATGGGTTTATAATTGATGATCTCCGTTATGAGGAAGATGGAGAAATTTTTGATGCCATGGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 FR47

Protein Analysis

224

Amino Acids

25.97

Weight (kDa)

4.47

Isoelectric Point (pI)

29.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf1 PF09174 26 - 192 9.1e-52 Maf1 regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 617
AarI CACCTGC 1 cut(s) 208
Acc36I ACCTGC 1 cut(s) 208
AccIII TCCGGA 1 cut(s) 505
AclWI GGATC 4 cut(s) 124, 216, 479, 491
AcsI RAATTY 1 cut(s) 651
AcuI CTGAAG 1 cut(s) 271
AfaI GTAC 2 cut(s) 8, 425
AfiI CCNNNNNNNGG 2 cut(s) 512, 637
AgsI TTSAA 2 cut(s) 92, 532
AjnI CCWGG 2 cut(s) 246, 326
AluBI AGCT 2 cut(s) 95, 518
AluI AGCT 2 cut(s) 95, 518
Alw26I GTCTC 2 cut(s) 138, 383
AlwI GGATC 4 cut(s) 124, 216, 479, 491
Aor13HI TCCGGA 1 cut(s) 505
ApoI RAATTY 1 cut(s) 651
Asp700I GAANNNNTTC 1 cut(s) 175
AsuHPI GGTGA 3 cut(s) 189, 296, 613
BbsI GAAGAC 1 cut(s) 239
BccI CCATC 3 cut(s) 302, 602, 638
BciT130I CCWGG 2 cut(s) 248, 328
BciVI GTATCC 2 cut(s) 282, 409
BcoDI GTCTC 2 cut(s) 138, 383
BfuAI ACCTGC 1 cut(s) 208
BfuI GTATCC 2 cut(s) 282, 409
BmcAI AGTACT 1 cut(s) 8
Bme1390I CCNGG 2 cut(s) 248, 328
BmrFI CCNGG 2 cut(s) 248, 328
BmsI GCATC 3 cut(s) 380, 481, 649
BpiI GAAGAC 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 495
BsaJI CCNNGG 3 cut(s) 24, 327, 663
BsaWI WCCGGW 1 cut(s) 505
Bsc4I CCNNNNNNNGG 2 cut(s) 512, 637
Bse1I ACTGG 1 cut(s) 307
Bse8I GATNNNNATC 1 cut(s) 495
BseAI TCCGGA 1 cut(s) 505
BseBI CCWGG 2 cut(s) 248, 328
BseDI CCNNGG 3 cut(s) 24, 327, 663
BseGI GGATG 2 cut(s) 89, 442
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 2 cut(s) 512, 637
BseMII CTCAG 3 cut(s) 128, 195, 206
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 528
BsiSI CCGG 2 cut(s) 229, 506
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 2 cut(s) 512, 637
BsmAI GTCTC 2 cut(s) 138, 383
BsmFI GGGAC 1 cut(s) 344
Bsp13I TCCGGA 1 cut(s) 505
Bsp1407I TGTACA 1 cut(s) 423
Bsp143I GATC 5 cut(s) 116, 221, 484, 496, 625
Bsp19I CCATGG 1 cut(s) 663
BspCNI CTCAG 3 cut(s) 129, 196, 207
BspEI TCCGGA 1 cut(s) 505
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 4 cut(s) 124, 216, 479, 491
BsrGI TGTACA 1 cut(s) 423
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 3 cut(s) 24, 327, 663
BssMI GATC 5 cut(s) 116, 221, 484, 496, 625
BssT1I CCWWGG 2 cut(s) 24, 663
Bst2UI CCWGG 2 cut(s) 248, 328
Bst4CI ACNGT 2 cut(s) 132, 335
Bst6I CTCTTC 1 cut(s) 196
BstAUI TGTACA 1 cut(s) 423
BstDEI CTNAG 4 cut(s) 10, 137, 204, 215
BstDSI CCRYGG 1 cut(s) 663
BstF5I GGATG 2 cut(s) 89, 442
BstKTI GATC 5 cut(s) 119, 224, 487, 499, 628
BstMAI GTCTC 2 cut(s) 138, 383
BstMBI GATC 5 cut(s) 116, 221, 484, 496, 625
BstMWI GCNNNNNNNGC 2 cut(s) 225, 299
BstNI CCWGG 2 cut(s) 248, 328
BstSCI CCNGG 2 cut(s) 246, 326
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BsuI GTATCC 2 cut(s) 282, 409
BtgI CCRYGG 1 cut(s) 663
BtsCI GGATG 2 cut(s) 89, 442
BtsIMutI CAGTG 2 cut(s) 183, 295
BveI ACCTGC 1 cut(s) 208
CsiI ACCWGGT 1 cut(s) 246
Csp6I GTAC 2 cut(s) 7, 424
CviAII CATG 1 cut(s) 664
CviJI RGCY 4 cut(s) 95, 228, 431, 518
CviKI_1 RGCY 4 cut(s) 95, 228, 431, 518
CviQI GTAC 2 cut(s) 7, 424
DdeI CTNAG 4 cut(s) 10, 137, 204, 215
DpnI GATC 5 cut(s) 118, 223, 486, 498, 627
DpnII GATC 5 cut(s) 116, 221, 484, 496, 625
DraI TTTAAA 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 24, 663
Eco57I CTGAAG 1 cut(s) 271
EcoRII CCWGG 2 cut(s) 246, 326
EcoT14I CCWWGG 2 cut(s) 24, 663
ErhI CCWWGG 2 cut(s) 24, 663
FaeI CATG 1 cut(s) 667
FaqI GGGAC 1 cut(s) 344
FatI CATG 1 cut(s) 663
FokI GGATG 2 cut(s) 96, 449
HapII CCGG 2 cut(s) 229, 506
Hin1II CATG 1 cut(s) 667
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 2 cut(s) 154, 188
HpaII CCGG 2 cut(s) 229, 506
HphI GGTGA 3 cut(s) 189, 296, 613
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 5 cut(s) 121, 138, 170, 181, 216
Hpy188III TCNNGA 7 cut(s) 89, 158, 253, 275, 482, 488, 506
Hpy8I GTNNAC 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 2 cut(s) 132, 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 299
HpyF3I CTNAG 4 cut(s) 10, 137, 204, 215
Hsp92II CATG 1 cut(s) 667
Kpn2I TCCGGA 1 cut(s) 505
Kzo9I GATC 5 cut(s) 116, 221, 484, 496, 625
LmnI GCTCC 2 cut(s) 28, 515
LweI GCATC 3 cut(s) 380, 481, 649
MabI ACCWGGT 1 cut(s) 246
MaeIII GTNAC 3 cut(s) 473, 593, 601
MalI GATC 5 cut(s) 118, 223, 486, 498, 627
MboI GATC 5 cut(s) 116, 221, 484, 496, 625
MboII GAAGA 5 cut(s) 168, 183, 244, 304, 653
MflI RGATCY 1 cut(s) 221
MluCI AATT 3 cut(s) 532, 618, 651
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 427
MnlI CCTC 7 cut(s) 205, 269, 313, 391, 433, 506, 631
MroI TCCGGA 1 cut(s) 505
MroXI GAANNNNTTC 1 cut(s) 175
MseI TTAA 5 cut(s) 35, 56, 78, 339, 590
MslI CAYNNNNRTG 1 cut(s) 668
MspI CCGG 2 cut(s) 229, 506
MspR9I CCNGG 2 cut(s) 248, 328
MvaI CCWGG 2 cut(s) 248, 328
MwoI GCNNNNNNNGC 2 cut(s) 225, 299
NcoI CCATGG 1 cut(s) 663
NdeII GATC 5 cut(s) 116, 221, 484, 496, 625
NlaIII CATG 1 cut(s) 667
NmuCI GTSAC 1 cut(s) 601
PaqCI CACCTGC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 154
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PsiI TTATAA 1 cut(s) 617
Psp6I CCWGG 2 cut(s) 246, 326
PspGI CCWGG 2 cut(s) 246, 326
PsuI RGATCY 1 cut(s) 221
RsaI GTAC 2 cut(s) 8, 425
RsaNI GTAC 2 cut(s) 7, 424
RseI CAYNNNNRTG 1 cut(s) 668
SaqAI TTAA 5 cut(s) 35, 56, 78, 339, 590
Sau3AI GATC 5 cut(s) 116, 221, 484, 496, 625
ScaI AGTACT 1 cut(s) 8
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 2 cut(s) 248, 328
SetI ASST 8 cut(s) 97, 202, 249, 329, 359, 422, 444, 520
SexAI ACCWGGT 1 cut(s) 246
SfaNI GCATC 3 cut(s) 380, 481, 649
SmiI ATTTAAAT 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 668
Sse9I AATT 3 cut(s) 532, 618, 651
StyD4I CCNGG 2 cut(s) 246, 326
StyI CCWWGG 2 cut(s) 24, 663
SwaI ATTTAAAT 1 cut(s) 57
TaaI ACNGT 2 cut(s) 132, 335
TasI AATT 3 cut(s) 532, 618, 651
TatI WGTACW 2 cut(s) 6, 423
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 5 cut(s) 35, 56, 78, 339, 590
Tru9I TTAA 5 cut(s) 35, 56, 78, 339, 590
TscAI CASTG 2 cut(s) 190, 295
TseFI GTSAC 1 cut(s) 601
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 3 cut(s) 489, 566, 620
TspRI CASTG 2 cut(s) 190, 295
XapI RAATTY 1 cut(s) 651
XmnI GAANNNNTTC 1 cut(s) 175
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.